Clone Sequence Records
BS15094.complete Sequence
785 bp assembled on 2010-02-09
GenBank Submission: KX803702
> BS15094.complete
GAAGTTATCAGTCGACATGATGCTGCTCCAGCTGGGCTGCGTGGCCCTCT
TCTGCTGCTTGGTTAGCGGTGCCTCGAATTTCCCTCCCGAACTGCCGCGC
TGCCACATGGGCGACACCAGCTGCATCATCAACGTGTCGCACATGCTGAT
CAGACAGCACGCGAGGACCGGCTATCCGTCCGCTGGATTCCCCCAGGTGG
AGCCCTTCCTGATCAAGCGCTTCGACATCTCCGACGGACGCACTGGCTCC
CTGAATCTAAAGCTCAACTTCAGGGACGTGAATGTGGAGGGCCTGTCCAG
TGTGAAGTTCGACAGAGCCGTTGGCTTTGGCGCTGATCCTGCAACCAGCA
AGTTTGAGATGTACGGATCCTTTCCCAAGATCGTGCTGAAGGGCAAGTAC
GTGGCGGATGGACGCATCCTGATCCTGCCGATTCGTGGCGATGGCGATGC
CGAGATCGTGTTGCACAATCCCAAGTTTTCGGTGAAATTCAAGCCGGGCA
CACAGCAGCGCAATGGACGCACCTACCTGAGCGTGGATAAGCTCAAGGTT
CTGGTGGAGCCACAAAAGATGAACATTCGGCTGGAGAACCTCTTTAATGG
CGACCAGGCATTGGGCACCAATCTGAATCAGTTCCTCAACGACAACTGGA
CGGAGGTGTGGAACGAGCTGCATCCCTCCATTCATGTGGCCATCGCCGAG
ATCATGAAGAGCGTTCTCTCGCAGCTCTTCAAGCGCTTCGCCTACGAGGA
TTTATTCCTCGAGAACTGAAAGCTTTCTAGACCAT
BS15094.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11852-RA | 753 | CG11852-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11852-RA | 1045 | CG11852-RA | 100..852 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25238200..25238446 | 322..568 | 1235 | 100 | Plus |
3R | 32079331 | 3R | 25237837..25238074 | 84..321 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 25238501..25238702 | 568..769 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 25237713..25237779 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:34:41 has no hits.
BS15094.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:21 Download gff for
BS15094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 89..840 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:06 Download gff for
BS15094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 100..851 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:44 Download gff for
BS15094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 89..840 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:01 Download gff for
BS15094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 100..851 | 17..768 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:01 Download gff for
BS15094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25237837..25238074 | 84..321 | 100 | -> | Plus |
3R | 25238200..25238445 | 322..567 | 100 | -> | Plus |
3R | 25238501..25238701 | 568..768 | 100 | | Plus |
3R | 25237713..25237779 | 17..83 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:06 Download gff for
BS15094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21063435..21063501 | 17..83 | 100 | -> | Plus |
arm_3R | 21063559..21063796 | 84..321 | 100 | -> | Plus |
arm_3R | 21063922..21064167 | 322..567 | 100 | -> | Plus |
arm_3R | 21064223..21064423 | 568..768 | 100 | | Plus |
BS15094.3prime Sequence
783 bp (731 high quality bases) assembled on 2006-10-23
> BS15094.3prime
ATGGTCTAGAAAGCTTTCACTTCTCGAGGAATAAATCCTCGTAGGCGAAG
CGCTTGAAGAGCTGCGAGAGAACGCTCTTCATGATCTCGGCGATGGCCAC
ATGAATGGAGGGATGCAGCTCGTTCCACACCTCCGTCCAGTTGTCGTTGA
GGAACTGATTCAGATTGGTGCCCAATGCCTGGTCGCCATTAAAGAGGTTC
TCCAGCCGAATGTTCATCTTTTGTGGCTCCACCAGAACCTTGAGCTTATC
CACGCTCAGGTAGGTGCGTCCATTGCGCTGCTGTGTGCCCGGCTTGAATT
TCACCGAAAACTTGGGATTGTGCAACACGATCTCGGCATCGCCATCGCCA
CGAATCGGCAGGATCAGGATGCGTCCATCCGCCACGTACTTGCCCTTCAG
CACGATCTTGGGAAAGGATCCGTACATCTCAAACTTGCTGGTTGCAGGAT
CAGCGCCAAAGCCAACGGCTCTGTCGAACTTCACACTGGACAGGCCCTCC
ACATTCACGTCCCTGAAGTTGAGCTTTAGATTCAGGGAGCCAGTGCGTCC
GTCGGAGATGTCGAAGCGCTTGATCAGGAAGGGCTCCACCTGGGGGAATC
CAGCGGACGGATAGCCGGTCCTCGCGTGCTGTCTGATCAGCATGTGCGAC
ACGTTGATGATGCAGCTGGTGTCGCCCATGTGGCAGCGCGGCAGTTCGGG
AGGGAAATTCGAGGCACCGCTAACCAAGCAGCAGAAGAGGGCCACGCAGC
CCAGCTGGAGCAGCATCATGTCCACTGATAACT
BS15094.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11852-PA | 753 | CG11852-RA | 1..749 | 769..21 | 3745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11852-RA | 1045 | CG11852-RA | 100..852 | 769..17 | 3750 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25238200..25238446 | 464..218 | 1235 | 100 | Minus |
3R | 32079331 | 3R | 25237837..25238074 | 702..465 | 1190 | 100 | Minus |
3R | 32079331 | 3R | 25238501..25238702 | 218..17 | 995 | 99.5 | Minus |
3R | 32079331 | 3R | 25237713..25237779 | 769..703 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:17:43 has no hits.
BS15094.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:51 Download gff for
BS15094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-PA | 1..753 | 17..769 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:12 Download gff for
BS15094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-PA | 1..753 | 17..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:41:37 Download gff for
BS15094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 96..854 | 13..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:20 Download gff for
BS15094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 96..854 | 13..777 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:20 Download gff for
BS15094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25237709..25237779 | 703..777 | 94 | -> | Minus |
3R | 25237837..25238074 | 465..702 | 100 | -> | Minus |
3R | 25238200..25238445 | 219..464 | 100 | -> | Minus |
3R | 25238501..25238704 | 13..218 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:41:37 Download gff for
BS15094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21063431..21063501 | 703..777 | 94 | -> | Minus |
arm_3R | 21063559..21063796 | 465..702 | 100 | -> | Minus |
arm_3R | 21063922..21064167 | 219..464 | 100 | -> | Minus |
arm_3R | 21064223..21064426 | 13..218 | 98 | | Minus |
BS15094.5prime Sequence
783 bp (726 high quality bases) assembled on 2006-10-23
> BS15094.5prime
GAAGTTATCCTTCGACATGATGCTGCTCCAGCTGGGCTGCGTGGCCCTCT
TCTGCTGCTTGGTTAGCGGTGCCTCGAATTTCCCTCCCGAACTGCCGCGC
TGCCACATGGGCGACACCAGCTGCATCATCAACGTGTCGCACATGCTGAT
CAGACAGCACGCGAGGACCGGCTATCCGTCCGCTGGATTCCCCCAGGTGG
AGCCCTTCCTGATCAAGCGCTTCGACATCTCCGACGGACGCACTGGCTCC
CTGAATCTAAAGCTCAACTTCAGGGACGTGAATGTGGAGGGCCTGTCCAG
TGTGAAGTTCGACAGAGCCGTTGGCTTTGGCGCTGATCCTGCAACCAGCA
AGTTTGAGATGTACGGATCCTTTCCCAAGATCGTGCTGAAGGGCAAGTAC
GTGGCGGATGGACGCATCCTGATCCTGCCGATTCGTGGCGATGGCGATGC
CGAGATCGTGTTGCACAATCCCAAGTTTTCGGTGAAATTCAAGCCGGGCA
CACAGCAGCGCAATGGACGCACCTACCTGAGCGTGGATAAGCTCAAGGTT
CTGGTGGAGCCACAAAAGATGAACATTCGGCTGGAGAACCTCTTTAATGG
CGACCAGGCATTGGGCACCAATCTGAATCAGTTCCTCAACGACAACTGGA
CGGAGGTGTGGAACGAGCTGCATCCCTCCATTCATGTGGCCATCGCCGAG
ATCATGAAGAGCGTTCTCTCGCAGCTCTTNCAGCGCTTCGCCTACGAGGA
TTTATTCCTCGAGAACTGAAAGCTTTCTAGACC
BS15094.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11852-PA | 753 | CG11852-RA | 1..753 | 17..769 | 3721 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11852-RA | 1045 | CG11852-RA | 100..852 | 17..769 | 3739 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:56:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25238200..25238446 | 322..568 | 1235 | 100 | Plus |
3R | 32079331 | 3R | 25237837..25238074 | 84..321 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 25238501..25238702 | 568..769 | 984 | 99 | Plus |
3R | 32079331 | 3R | 25237713..25237779 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:56:54 has no hits.
BS15094.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:52 Download gff for
BS15094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-PA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:13 Download gff for
BS15094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-PA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:02 Download gff for
BS15094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 92..854 | 6..773 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:30:28 Download gff for
BS15094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 92..854 | 6..773 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:30:28 Download gff for
BS15094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25237705..25237779 | 6..83 | 94 | -> | Plus |
3R | 25237837..25238074 | 84..321 | 100 | -> | Plus |
3R | 25238200..25238445 | 322..567 | 100 | -> | Plus |
3R | 25238501..25238704 | 568..773 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:02 Download gff for
BS15094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21063427..21063501 | 6..83 | 94 | -> | Plus |
arm_3R | 21063559..21063796 | 84..321 | 100 | -> | Plus |
arm_3R | 21063922..21064167 | 322..567 | 100 | -> | Plus |
arm_3R | 21064223..21064426 | 568..773 | 98 | | Plus |
BS15094.pep Sequence
Translation from 16 to 768
> BS15094.pep
MMLLQLGCVALFCCLVSGASNFPPELPRCHMGDTSCIINVSHMLIRQHAR
TGYPSAGFPQVEPFLIKRFDISDGRTGSLNLKLNFRDVNVEGLSSVKFDR
AVGFGADPATSKFEMYGSFPKIVLKGKYVADGRILILPIRGDGDAEIVLH
NPKFSVKFKPGTQQRNGRTYLSVDKLKVLVEPQKMNIRLENLFNGDQALG
TNLNQFLNDNWTEVWNELHPSIHVAIAEIMKSVLSQLFKRFAYEDLFLEN
*
BS15094.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11852-PA | 250 | CG11852-PA | 1..250 | 1..250 | 1311 | 100 | Plus |
CG11854-PB | 250 | CG11854-PB | 1..249 | 2..248 | 371 | 34.4 | Plus |
to-PB | 249 | CG11853-PB | 1..247 | 3..249 | 341 | 30.6 | Plus |
to-PA | 249 | CG11853-PA | 1..247 | 3..249 | 341 | 30.6 | Plus |
CG10407-PB | 259 | CG10407-PB | 31..256 | 19..246 | 313 | 30 | Plus |