Clone Sequence Records
BS15102.3prime Sequence
707 bp (620 high quality bases) assembled on 2006-10-23
> BS15102.3prime
ATGGTCTAGAAAGCTGGGATCTGGCGACCCTCTGGCGCTTGCTGGGCGAC
ACCAGAACCGGCGAGGGCTGTTGGTTACTTGAGATGGCGTCGAATATGCT
GCTCTCCGAGCGCTGGTACTCGGTGCCAATGTTTTCCAGGTTCAGATCGG
CATCGAGGACTAGGACCTTGCACGACTGCGGTCGTCTCTGGTGTATCAAC
CAGTCCTCGTGCAACTCATGCAGCTCCTGAAGGTACTTAAGCGGCACGCA
GCTCTCCTCAGAACGAGCCCGCTGCCGGATGCGTTCGTACGCCACCTCCG
GCGAGGTGCGCAGATATATGATGAGGTCCGCCTGCACGTGAATGGACTCT
TCGATGAACTTGTACCACTCCTCCAGCGTATTGTACATGCCCTGCTCCAG
CGAGCCGTTTCGTCGCATGTTCTCCACGAAGCAATAGCGAGCGCTAAAAA
TGGAGCGCTCCATTATTTTTAGCTTCTTGTTGGTTGGGGCGGTGTGCGAC
TGCAGCATGGTCAGCGTGACATAACTCTGAAAGGGCATGGCCCACTTCTT
GGGATCTTTGTACATCAGCTCCAACAGATTTACCCCGTTGACGTTGCGCC
ACTTCTCGACGGGCTCGGTCAGCAAGCAAATGTCTTTCTTGTACTTCTCG
AAGTGGTTCAAATACGTGGTCTTCCCGCTGCCCGATGTTGGCCTCGATGA
AGGACGG
BS15102.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5452-PA | 753 | dnk-RA | 88..751 | 682..19 | 3245 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnk-RB | 1265 | CG5452-RB | 285..971 | 707..19 | 3335 | 99.1 | Minus |
dnk-RA | 1123 | CG5452-RA | 213..899 | 707..19 | 3335 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18981979..18982252 | 438..165 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 18981642..18981903 | 700..438 | 1205 | 98.1 | Minus |
3R | 32079331 | 3R | 18982306..18982455 | 168..19 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:28:16 has no hits.
BS15102.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:56 Download gff for
BS15102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-PA | 65..753 | 17..707 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:18 Download gff for
BS15102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5452-PA | 65..753 | 17..707 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:54:36 Download gff for
BS15102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 213..906 | 11..707 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:53:47 Download gff for
BS15102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 213..906 | 11..707 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:53:47 Download gff for
BS15102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18981636..18981903 | 438..707 | 97 | -> | Minus |
3R | 18981980..18982250 | 167..437 | 100 | -> | Minus |
3R | 18982308..18982462 | 11..166 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:54:36 Download gff for
BS15102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14808030..14808184 | 11..166 | 97 | | Minus |
arm_3R | 14807358..14807625 | 438..707 | 97 | -> | Minus |
arm_3R | 14807702..14807972 | 167..437 | 100 | -> | Minus |
BS15102.5prime Sequence
783 bp (770 high quality bases) assembled on 2006-10-23
> BS15102.5prime
GAAGTTATCAGTCGACATGGCGGAGGCAGCATCCTGTGCCCGAAAGGGGA
CCAAGTACGCCGAGGGCACCCAGCCCTTCACCGTCCTCATCGAGGGCAAC
ATCGGCAGCGGGAAGACCACGTATTTGAACCACTTCGAGAAGTACAAGAA
CGACATTTGCCTGCTGACCGAGCCCGTCGAGAAGTGGCGCAACGTCAACG
GGGTAAATCTGCTGGAGCTGATGTACAAAGATCCCAAGAAGTGGGCCATG
CCCTTTCAGAGTTATGTCACGCTGACCATGCTGCAGTCGCACACCGCCCC
AACCAACAAGAAGCTAAAAATAATGGAGCGCTCCATTTTTAGCGCTCGCT
ATTGCTTCGTGGAGAACATGCGACGAAACGGCTCGCTGGAGCAGGGCATG
TACAATACGCTGGAGGAGTGGTACAAGTTCATCGAAGAGTCCATTCACGT
GCAGGCGGACCTCATCATATATCTGCGCACCTCGCCGGAGGTGGCGTACG
AACGCATCCGGCAGCGGGCTCGTTCTGAGGAGAGCTGCGTGCCGCTTAAG
TACCTTCAGGAGCTGCATGAGTTGCACGAGGACTGGTTGATACACCAGAG
ACGACCGCAGTCGTGCAAGGTCCTAGTCCTCGATGCCGATCTGAACCTGG
AAAACATTGGCACCGAGTACCAGCGCTCGGAGAGCAGCATATTCGACGCC
ATCTCAAGTAACCAACAGCCCTCGCCGGTTCTGGTGTCGCCCAGCAAGCG
CCAGAGGGTCGCCAGATAAAAGCTTTCTAGACC
BS15102.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5452-PA | 753 | dnk-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnk-RB | 1265 | CG5452-RB | 221..973 | 17..769 | 3765 | 100 | Plus |
dnk-RA | 1123 | CG5452-RA | 149..901 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18981572..18981903 | 17..348 | 1660 | 100 | Plus |
3R | 32079331 | 3R | 18981979..18982252 | 348..621 | 1370 | 100 | Plus |
3R | 32079331 | 3R | 18982306..18982457 | 618..769 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:22:49 has no hits.
BS15102.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:57 Download gff for
BS15102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:19 Download gff for
BS15102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5452-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:36 Download gff for
BS15102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 149..906 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:03 Download gff for
BS15102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 149..906 | 17..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:03 Download gff for
BS15102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18981572..18981903 | 17..348 | 100 | -> | Plus |
3R | 18981980..18982250 | 349..619 | 100 | -> | Plus |
3R | 18982308..18982462 | 620..776 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:36 Download gff for
BS15102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14807294..14807625 | 17..348 | 100 | -> | Plus |
arm_3R | 14807702..14807972 | 349..619 | 100 | -> | Plus |
arm_3R | 14808030..14808184 | 620..776 | 97 | | Plus |
BS15102.complete Sequence
785 bp assembled on 2006-11-01
GenBank Submission: FJ637873
> BS15102.complete
GAAGTTATCAGTCGACATGGCGGAGGCAGCATCCTGTGCCCGAAAGGGGA
CCAAGTACGCCGAGGGCACCCAGCCCTTCACCGTCCTCATCGAGGGCAAC
ATCGGCAGCGGGAAGACCACGTATTTGAACCACTTCGAGAAGTACAAGAA
CGACATTTGCCTGCTGACCGAGCCCGTCGAGAAGTGGCGCAACGTCAACG
GGGTAAATCTGCTGGAGCTGATGTACAAAGATCCCAAGAAGTGGGCCATG
CCCTTTCAGAGTTATGTCACGCTGACCATGCTGCAGTCGCACACCGCCCC
AACCAACAAGAAGCTAAAAATAATGGAGCGCTCCATTTTTAGCGCTCGCT
ATTGCTTCGTGGAGAACATGCGACGAAACGGCTCGCTGGAGCAGGGCATG
TACAATACGCTGGAGGAGTGGTACAAGTTCATCGAAGAGTCCATTCACGT
GCAGGCGGACCTCATCATATATCTGCGCACCTCGCCGGAGGTGGCGTACG
AACGCATCCGGCAGCGGGCTCGTTCTGAGGAGAGCTGCGTGCCGCTTAAG
TACCTTCAGGAGCTGCATGAGTTGCACGAGGACTGGTTGATACACCAGAG
ACGACCGCAGTCGTGCAAGGTCCTAGTCCTCGATGCCGATCTGAACCTGG
AAAACATTGGCACCGAGTACCAGCGCTCGGAGAGCAGCATATTCGACGCC
ATCTCAAGTAACCAACAGCCCTCGCCGGTTCTGGTGTCGCCCAGCAAGCG
CCAGAGGGTCGCCAGATAAAAGCTTTCTAGACCAT
BS15102.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnk-RB | 753 | CG5452-PB | 1..753 | 17..769 | 3765 | 100 | Plus |
dnk-RA | 753 | CG5452-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnk-RB | 1265 | CG5452-RB | 221..973 | 17..769 | 3765 | 100 | Plus |
dnk-RA | 1123 | CG5452-RA | 149..901 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18981572..18981903 | 17..348 | 1660 | 100 | Plus |
3R | 32079331 | 3R | 18981979..18982252 | 348..621 | 1370 | 100 | Plus |
3R | 32079331 | 3R | 18982306..18982457 | 618..769 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:00:09 has no hits.
BS15102.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:34 Download gff for
BS15102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:14 Download gff for
BS15102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 172..929 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:01 Download gff for
BS15102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 149..899 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:34 Download gff for
BS15102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 172..929 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:57 Download gff for
BS15102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 149..899 | 17..767 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:57 Download gff for
BS15102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18981572..18981903 | 17..348 | 100 | -> | Plus |
3R | 18981980..18982250 | 349..619 | 100 | -> | Plus |
3R | 18982308..18982455 | 620..767 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:01 Download gff for
BS15102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14807294..14807625 | 17..348 | 100 | -> | Plus |
arm_3R | 14807702..14807972 | 349..619 | 100 | -> | Plus |
arm_3R | 14808030..14808177 | 620..767 | 100 | | Plus |
BS15102.pep Sequence
Translation from 16 to 768
> BS15102.pep
MAEAASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLL
TEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKL
KIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLI
IYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSC
KVLVLDADLNLENIGTEYQRSESSIFDAISSNQQPSPVLVSPSKRQRVAR
*
BS15102.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnk-PB | 250 | CG5452-PB | 1..250 | 1..250 | 1308 | 100 | Plus |
dnk-PA | 250 | CG5452-PA | 1..250 | 1..250 | 1308 | 100 | Plus |