Clone BS15102 Report

Search the DGRC for BS15102

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:151
Well:2
Vector:pDNR-Dual
Associated Gene/Transcriptdnk-RA
Protein status:BS15102.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15102.3prime Sequence

707 bp (620 high quality bases) assembled on 2006-10-23

> BS15102.3prime
ATGGTCTAGAAAGCTGGGATCTGGCGACCCTCTGGCGCTTGCTGGGCGAC
ACCAGAACCGGCGAGGGCTGTTGGTTACTTGAGATGGCGTCGAATATGCT
GCTCTCCGAGCGCTGGTACTCGGTGCCAATGTTTTCCAGGTTCAGATCGG
CATCGAGGACTAGGACCTTGCACGACTGCGGTCGTCTCTGGTGTATCAAC
CAGTCCTCGTGCAACTCATGCAGCTCCTGAAGGTACTTAAGCGGCACGCA
GCTCTCCTCAGAACGAGCCCGCTGCCGGATGCGTTCGTACGCCACCTCCG
GCGAGGTGCGCAGATATATGATGAGGTCCGCCTGCACGTGAATGGACTCT
TCGATGAACTTGTACCACTCCTCCAGCGTATTGTACATGCCCTGCTCCAG
CGAGCCGTTTCGTCGCATGTTCTCCACGAAGCAATAGCGAGCGCTAAAAA
TGGAGCGCTCCATTATTTTTAGCTTCTTGTTGGTTGGGGCGGTGTGCGAC
TGCAGCATGGTCAGCGTGACATAACTCTGAAAGGGCATGGCCCACTTCTT
GGGATCTTTGTACATCAGCTCCAACAGATTTACCCCGTTGACGTTGCGCC
ACTTCTCGACGGGCTCGGTCAGCAAGCAAATGTCTTTCTTGTACTTCTCG
AAGTGGTTCAAATACGTGGTCTTCCCGCTGCCCGATGTTGGCCTCGATGA
AGGACGG

BS15102.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5452-PA 753 dnk-RA 88..751 682..19 3245 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
dnk-RB 1265 CG5452-RB 285..971 707..19 3335 99.1 Minus
dnk-RA 1123 CG5452-RA 213..899 707..19 3335 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18981979..18982252 438..165 1370 100 Minus
3R 32079331 3R 18981642..18981903 700..438 1205 98.1 Minus
3R 32079331 3R 18982306..18982455 168..19 750 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:28:16 has no hits.

BS15102.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:56 Download gff for BS15102.3prime
Subject Subject Range Query Range Percent Splice Strand
dnk-PA 65..753 17..707 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:18 Download gff for BS15102.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5452-PA 65..753 17..707 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:54:36 Download gff for BS15102.3prime
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 213..906 11..707 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:53:47 Download gff for BS15102.3prime
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 213..906 11..707 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:53:47 Download gff for BS15102.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18981636..18981903 438..707 97 -> Minus
3R 18981980..18982250 167..437 100 -> Minus
3R 18982308..18982462 11..166 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:54:36 Download gff for BS15102.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14808030..14808184 11..166 97   Minus
arm_3R 14807358..14807625 438..707 97 -> Minus
arm_3R 14807702..14807972 167..437 100 -> Minus

BS15102.5prime Sequence

783 bp (770 high quality bases) assembled on 2006-10-23

> BS15102.5prime
GAAGTTATCAGTCGACATGGCGGAGGCAGCATCCTGTGCCCGAAAGGGGA
CCAAGTACGCCGAGGGCACCCAGCCCTTCACCGTCCTCATCGAGGGCAAC
ATCGGCAGCGGGAAGACCACGTATTTGAACCACTTCGAGAAGTACAAGAA
CGACATTTGCCTGCTGACCGAGCCCGTCGAGAAGTGGCGCAACGTCAACG
GGGTAAATCTGCTGGAGCTGATGTACAAAGATCCCAAGAAGTGGGCCATG
CCCTTTCAGAGTTATGTCACGCTGACCATGCTGCAGTCGCACACCGCCCC
AACCAACAAGAAGCTAAAAATAATGGAGCGCTCCATTTTTAGCGCTCGCT
ATTGCTTCGTGGAGAACATGCGACGAAACGGCTCGCTGGAGCAGGGCATG
TACAATACGCTGGAGGAGTGGTACAAGTTCATCGAAGAGTCCATTCACGT
GCAGGCGGACCTCATCATATATCTGCGCACCTCGCCGGAGGTGGCGTACG
AACGCATCCGGCAGCGGGCTCGTTCTGAGGAGAGCTGCGTGCCGCTTAAG
TACCTTCAGGAGCTGCATGAGTTGCACGAGGACTGGTTGATACACCAGAG
ACGACCGCAGTCGTGCAAGGTCCTAGTCCTCGATGCCGATCTGAACCTGG
AAAACATTGGCACCGAGTACCAGCGCTCGGAGAGCAGCATATTCGACGCC
ATCTCAAGTAACCAACAGCCCTCGCCGGTTCTGGTGTCGCCCAGCAAGCG
CCAGAGGGTCGCCAGATAAAAGCTTTCTAGACC

BS15102.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5452-PA 753 dnk-RA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
dnk-RB 1265 CG5452-RB 221..973 17..769 3765 100 Plus
dnk-RA 1123 CG5452-RA 149..901 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18981572..18981903 17..348 1660 100 Plus
3R 32079331 3R 18981979..18982252 348..621 1370 100 Plus
3R 32079331 3R 18982306..18982457 618..769 760 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:22:49 has no hits.

BS15102.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:57 Download gff for BS15102.5prime
Subject Subject Range Query Range Percent Splice Strand
dnk-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:19 Download gff for BS15102.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5452-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:36 Download gff for BS15102.5prime
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 149..906 17..776 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:03 Download gff for BS15102.5prime
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 149..906 17..776 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:03 Download gff for BS15102.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18981572..18981903 17..348 100 -> Plus
3R 18981980..18982250 349..619 100 -> Plus
3R 18982308..18982462 620..776 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:36 Download gff for BS15102.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14807294..14807625 17..348 100 -> Plus
arm_3R 14807702..14807972 349..619 100 -> Plus
arm_3R 14808030..14808184 620..776 97   Plus

BS15102.complete Sequence

785 bp assembled on 2006-11-01

GenBank Submission: FJ637873

> BS15102.complete
GAAGTTATCAGTCGACATGGCGGAGGCAGCATCCTGTGCCCGAAAGGGGA
CCAAGTACGCCGAGGGCACCCAGCCCTTCACCGTCCTCATCGAGGGCAAC
ATCGGCAGCGGGAAGACCACGTATTTGAACCACTTCGAGAAGTACAAGAA
CGACATTTGCCTGCTGACCGAGCCCGTCGAGAAGTGGCGCAACGTCAACG
GGGTAAATCTGCTGGAGCTGATGTACAAAGATCCCAAGAAGTGGGCCATG
CCCTTTCAGAGTTATGTCACGCTGACCATGCTGCAGTCGCACACCGCCCC
AACCAACAAGAAGCTAAAAATAATGGAGCGCTCCATTTTTAGCGCTCGCT
ATTGCTTCGTGGAGAACATGCGACGAAACGGCTCGCTGGAGCAGGGCATG
TACAATACGCTGGAGGAGTGGTACAAGTTCATCGAAGAGTCCATTCACGT
GCAGGCGGACCTCATCATATATCTGCGCACCTCGCCGGAGGTGGCGTACG
AACGCATCCGGCAGCGGGCTCGTTCTGAGGAGAGCTGCGTGCCGCTTAAG
TACCTTCAGGAGCTGCATGAGTTGCACGAGGACTGGTTGATACACCAGAG
ACGACCGCAGTCGTGCAAGGTCCTAGTCCTCGATGCCGATCTGAACCTGG
AAAACATTGGCACCGAGTACCAGCGCTCGGAGAGCAGCATATTCGACGCC
ATCTCAAGTAACCAACAGCCCTCGCCGGTTCTGGTGTCGCCCAGCAAGCG
CCAGAGGGTCGCCAGATAAAAGCTTTCTAGACCAT

BS15102.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
dnk-RB 753 CG5452-PB 1..753 17..769 3765 100 Plus
dnk-RA 753 CG5452-PA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
dnk-RB 1265 CG5452-RB 221..973 17..769 3765 100 Plus
dnk-RA 1123 CG5452-RA 149..901 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18981572..18981903 17..348 1660 100 Plus
3R 32079331 3R 18981979..18982252 348..621 1370 100 Plus
3R 32079331 3R 18982306..18982457 618..769 760 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:00:09 has no hits.

BS15102.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:34 Download gff for BS15102.complete
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:14 Download gff for BS15102.complete
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 172..929 17..776 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:01 Download gff for BS15102.complete
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 149..899 17..767 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:34 Download gff for BS15102.complete
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 172..929 17..776 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:57 Download gff for BS15102.complete
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 149..899 17..767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:57 Download gff for BS15102.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18981572..18981903 17..348 100 -> Plus
3R 18981980..18982250 349..619 100 -> Plus
3R 18982308..18982455 620..767 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:01 Download gff for BS15102.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14807294..14807625 17..348 100 -> Plus
arm_3R 14807702..14807972 349..619 100 -> Plus
arm_3R 14808030..14808177 620..767 100   Plus

BS15102.pep Sequence

Translation from 16 to 768

> BS15102.pep
MAEAASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLL
TEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKL
KIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLI
IYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSC
KVLVLDADLNLENIGTEYQRSESSIFDAISSNQQPSPVLVSPSKRQRVAR
*

BS15102.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
dnk-PB 250 CG5452-PB 1..250 1..250 1308 100 Plus
dnk-PA 250 CG5452-PA 1..250 1..250 1308 100 Plus