Clone Sequence Records
BS15108.3prime Sequence
531 bp (531 high quality bases) assembled on 2006-10-23
> BS15108.3prime
ATGGTCTAGAAAGCTTCTCCATTAACGAAATTCCTCCGCCGTAATATTCC
AGGCGTGTCTGAGGCTGGACAAATGCCAACCAATCGGAGGCGTGCCTGGG
GAGGAGCCCCATGCTCTGGCACTTGTAGAGGGCCAAAGCCACGTTTGCTA
GGTTGCCCAGGAAGTAGACGATGCGCTGGCCAGTTCCCTGGGCCCCCTCC
GCCATTTTGGAAGTCACCTGGGTGGTGAAGATGGCCTTGATAGGCCGGAT
CAGCATCATGCCGACCATCATGATGGGAAAAATGGAAATCGAGTTTCCTG
ACATGTACATGATGAATAGATTCATGGGAATGTTCTTAAGAGGTCCCAGG
GCAAGGTCCCACGACTTCTTGATGACCAGGCGCTGGTCGCGCACCACTTC
ACTCTGGTTCACCAAAGCAGATGGATTGTAGCCCAGCGGCGAAGGAATAT
CAGCATTTTTGCTCCCGTTAAAGTCCAGCGCCCACTTTAACTTTTTTGGG
TTTTGCTTGGCGGACATGTCGACTGATAACT
BS15108.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11137-PA | 501 | CG11137-RA | 1..494 | 517..24 | 2420 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11137-RB | 957 | CG11137-RB | 91..585 | 518..24 | 2445 | 99.6 | Minus |
CG11137-RA | 644 | CG11137-RA | 91..585 | 518..24 | 2445 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22867547..22867854 | 24..331 | 1510 | 99.4 | Plus |
3L | 28110227 | 3L | 22867907..22868038 | 332..463 | 660 | 100 | Plus |
3L | 28110227 | 3L | 22868097..22868153 | 462..518 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:28:27 has no hits.
BS15108.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:07 Download gff for
BS15108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-PA | 1..501 | 17..517 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:29 Download gff for
BS15108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-PA | 1..501 | 17..517 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:54:41 Download gff for
BS15108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 86..587 | 20..525 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:54:21 Download gff for
BS15108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 86..587 | 20..525 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:54:21 Download gff for
BS15108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22867545..22867854 | 20..331 | 98 | <- | Plus |
3L | 22867907..22868036 | 332..461 | 100 | <- | Plus |
3L | 22868097..22868156 | 462..525 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:54:41 Download gff for
BS15108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22860645..22860954 | 20..331 | 98 | <- | Plus |
arm_3L | 22861007..22861136 | 332..461 | 100 | <- | Plus |
arm_3L | 22861197..22861256 | 462..525 | 93 | | Plus |
BS15108.5prime Sequence
532 bp (532 high quality bases) assembled on 2006-10-23
> BS15108.5prime
GAAGTTATCACTTCGACATGTCCGCCAAGCAAAACCCAAAAAAGTTAAAG
TGGGCGCTGGACTTTAACGGGAGCAAAAATGCTGACATTCCTTCGCCGCT
GGGCTACAATCCATCTGCTTTGGTGAACCAGAGTGAAGTGGTGCGCGACC
AGCGCCTGGTCATCAAGAAGTCGTGGGACCTTGCCCTGGGACCTCTTAAG
AACATTCCCATGAATCTATTCATCATGTACATGTCAGGAAACTCGATTTC
CATTTTTCCCATCATGATGGTCGGCATGATGCTGATCCGGCCTATCAAGG
CCATCTTCACCACCCAGGTGACTTCCAAAATGGCGGAGGGGGCCCAGGGA
ACTGGCCAGCGCATCGTCTACTTCCTGGGCAACCTAGCAAACGTGGCTTT
GGCCCTCTACAAGTGCCAGAGCATGGGGCTCCTCCCCACCCACGCCTCCG
ATTGGTTGGCATTTGTCCAGCCTCAGACACGCCTGGAATATTACGGCGGA
GGAATTTCGTTTGTCTAGAAGCTTTCTAGACC
BS15108.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11137-PA | 501 | CG11137-RA | 1..501 | 18..518 | 2480 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11137-RB | 957 | CG11137-RB | 91..592 | 17..518 | 2495 | 99.8 | Plus |
CG11137-RA | 644 | CG11137-RA | 91..592 | 17..518 | 2495 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22867540..22867854 | 518..204 | 1575 | 100 | Minus |
3L | 28110227 | 3L | 22867907..22868038 | 203..72 | 645 | 99.2 | Minus |
3L | 28110227 | 3L | 22868097..22868153 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:02:02 has no hits.
BS15108.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:08 Download gff for
BS15108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-PA | 1..501 | 18..518 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:30 Download gff for
BS15108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-PA | 1..501 | 18..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:01 Download gff for
BS15108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 86..595 | 9..525 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:53 Download gff for
BS15108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 86..595 | 9..525 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:53 Download gff for
BS15108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22867536..22867854 | 204..525 | 98 | <- | Minus |
3L | 22867907..22868036 | 74..203 | 99 | <- | Minus |
3L | 22868097..22868158 | 9..73 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:01 Download gff for
BS15108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22860636..22860954 | 204..525 | 98 | <- | Minus |
arm_3L | 22861007..22861136 | 74..203 | 99 | <- | Minus |
arm_3L | 22861197..22861258 | 9..73 | 93 | | Minus |
BS15108.complete Sequence
533 bp assembled on 2006-11-01
GenBank Submission: FJ637874
> BS15108.complete
GAAGTTATCAGTCGACATGTCCGCCAAGCAAAACCCAAAAAAGTTAAAGT
GGGCGCTGGACTTTAACGGGAGCAAAAATGCTGATATTCCTTCGCCGCTG
GGCTACAATCCATCTGCTTTGGTGAACCAGAGTGAAGTGGTGCGCGACCA
GCGCCTGGTCATCAAGAAGTCGTGGGACCTTGCCCTGGGACCTCTTAAGA
ACATTCCCATGAATCTATTCATCATGTACATGTCAGGAAACTCGATTTCC
ATTTTTCCCATCATGATGGTCGGCATGATGCTGATCCGGCCTATCAAGGC
CATCTTCACCACCCAGGTGACTTCCAAAATGGCGGAGGGGGCCCAGGGAA
CTGGCCAGCGCATCGTCTACTTCCTGGGCAACCTAGCAAACGTGGCTTTG
GCCCTCTACAAGTGCCAGAGCATGGGGCTCCTCCCCACCCACGCCTCCGA
TTGGTTGGCATTTGTCCAGCCTCAGACACGCCTGGAATATTACGGCGGAG
GAATTTCGTTTGTCTAGAAGCTTTCTAGACCAT
BS15108.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11137-RB | 501 | CG11137-PB | 1..501 | 17..517 | 2505 | 100 | Plus |
CG11137-RA | 501 | CG11137-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11137-RB | 957 | CG11137-RB | 91..592 | 16..517 | 2510 | 100 | Plus |
CG11137-RA | 644 | CG11137-RA | 91..592 | 16..517 | 2510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22867540..22867854 | 517..203 | 1575 | 100 | Minus |
3L | 28110227 | 3L | 22867907..22868038 | 202..71 | 660 | 100 | Minus |
3L | 28110227 | 3L | 22868097..22868153 | 72..16 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:26:38 has no hits.
BS15108.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:36 Download gff for
BS15108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 1..501 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:16 Download gff for
BS15108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 77..586 | 9..524 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:29 Download gff for
BS15108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 92..592 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:36 Download gff for
BS15108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 77..586 | 9..524 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:59 Download gff for
BS15108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 92..592 | 17..517 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:59 Download gff for
BS15108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22867540..22867854 | 203..517 | 100 | <- | Minus |
3L | 22867907..22868036 | 73..202 | 100 | <- | Minus |
3L | 22868097..22868152 | 17..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:29 Download gff for
BS15108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22860640..22860954 | 203..517 | 100 | <- | Minus |
arm_3L | 22861007..22861136 | 73..202 | 100 | <- | Minus |
arm_3L | 22861197..22861252 | 17..72 | 100 | | Minus |
BS15108.pep Sequence
Translation from 16 to 516
> BS15108.pep
MSAKQNPKKLKWALDFNGSKNADIPSPLGYNPSALVNQSEVVRDQRLVIK
KSWDLALGPLKNIPMNLFIMYMSGNSISIFPIMMVGMMLIRPIKAIFTTQ
VTSKMAEGAQGTGQRIVYFLGNLANVALALYKCQSMGLLPTHASDWLAFV
QPQTRLEYYGGGISFV*
BS15108.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11137-PB | 166 | CG11137-PB | 1..166 | 1..166 | 856 | 100 | Plus |
CG11137-PA | 166 | CG11137-PA | 1..166 | 1..166 | 856 | 100 | Plus |