Clone BS15108 Report

Search the DGRC for BS15108

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:151
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG11137-RA
Protein status:BS15108.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15108.3prime Sequence

531 bp (531 high quality bases) assembled on 2006-10-23

> BS15108.3prime
ATGGTCTAGAAAGCTTCTCCATTAACGAAATTCCTCCGCCGTAATATTCC
AGGCGTGTCTGAGGCTGGACAAATGCCAACCAATCGGAGGCGTGCCTGGG
GAGGAGCCCCATGCTCTGGCACTTGTAGAGGGCCAAAGCCACGTTTGCTA
GGTTGCCCAGGAAGTAGACGATGCGCTGGCCAGTTCCCTGGGCCCCCTCC
GCCATTTTGGAAGTCACCTGGGTGGTGAAGATGGCCTTGATAGGCCGGAT
CAGCATCATGCCGACCATCATGATGGGAAAAATGGAAATCGAGTTTCCTG
ACATGTACATGATGAATAGATTCATGGGAATGTTCTTAAGAGGTCCCAGG
GCAAGGTCCCACGACTTCTTGATGACCAGGCGCTGGTCGCGCACCACTTC
ACTCTGGTTCACCAAAGCAGATGGATTGTAGCCCAGCGGCGAAGGAATAT
CAGCATTTTTGCTCCCGTTAAAGTCCAGCGCCCACTTTAACTTTTTTGGG
TTTTGCTTGGCGGACATGTCGACTGATAACT

BS15108.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11137-PA 501 CG11137-RA 1..494 517..24 2420 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11137-RB 957 CG11137-RB 91..585 518..24 2445 99.6 Minus
CG11137-RA 644 CG11137-RA 91..585 518..24 2445 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22867547..22867854 24..331 1510 99.4 Plus
3L 28110227 3L 22867907..22868038 332..463 660 100 Plus
3L 28110227 3L 22868097..22868153 462..518 285 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:28:27 has no hits.

BS15108.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:07 Download gff for BS15108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11137-PA 1..501 17..517 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:29 Download gff for BS15108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11137-PA 1..501 17..517 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:54:41 Download gff for BS15108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11137-RA 86..587 20..525 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:54:21 Download gff for BS15108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11137-RA 86..587 20..525 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:54:21 Download gff for BS15108.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22867545..22867854 20..331 98 <- Plus
3L 22867907..22868036 332..461 100 <- Plus
3L 22868097..22868156 462..525 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:54:41 Download gff for BS15108.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22860645..22860954 20..331 98 <- Plus
arm_3L 22861007..22861136 332..461 100 <- Plus
arm_3L 22861197..22861256 462..525 93   Plus

BS15108.5prime Sequence

532 bp (532 high quality bases) assembled on 2006-10-23

> BS15108.5prime
GAAGTTATCACTTCGACATGTCCGCCAAGCAAAACCCAAAAAAGTTAAAG
TGGGCGCTGGACTTTAACGGGAGCAAAAATGCTGACATTCCTTCGCCGCT
GGGCTACAATCCATCTGCTTTGGTGAACCAGAGTGAAGTGGTGCGCGACC
AGCGCCTGGTCATCAAGAAGTCGTGGGACCTTGCCCTGGGACCTCTTAAG
AACATTCCCATGAATCTATTCATCATGTACATGTCAGGAAACTCGATTTC
CATTTTTCCCATCATGATGGTCGGCATGATGCTGATCCGGCCTATCAAGG
CCATCTTCACCACCCAGGTGACTTCCAAAATGGCGGAGGGGGCCCAGGGA
ACTGGCCAGCGCATCGTCTACTTCCTGGGCAACCTAGCAAACGTGGCTTT
GGCCCTCTACAAGTGCCAGAGCATGGGGCTCCTCCCCACCCACGCCTCCG
ATTGGTTGGCATTTGTCCAGCCTCAGACACGCCTGGAATATTACGGCGGA
GGAATTTCGTTTGTCTAGAAGCTTTCTAGACC

BS15108.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11137-PA 501 CG11137-RA 1..501 18..518 2480 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11137-RB 957 CG11137-RB 91..592 17..518 2495 99.8 Plus
CG11137-RA 644 CG11137-RA 91..592 17..518 2495 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22867540..22867854 518..204 1575 100 Minus
3L 28110227 3L 22867907..22868038 203..72 645 99.2 Minus
3L 28110227 3L 22868097..22868153 73..17 285 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:02:02 has no hits.

BS15108.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:08 Download gff for BS15108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11137-PA 1..501 18..518 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:30 Download gff for BS15108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11137-PA 1..501 18..518 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:01 Download gff for BS15108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11137-RA 86..595 9..525 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:53 Download gff for BS15108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11137-RA 86..595 9..525 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:53 Download gff for BS15108.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22867536..22867854 204..525 98 <- Minus
3L 22867907..22868036 74..203 99 <- Minus
3L 22868097..22868158 9..73 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:01 Download gff for BS15108.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22860636..22860954 204..525 98 <- Minus
arm_3L 22861007..22861136 74..203 99 <- Minus
arm_3L 22861197..22861258 9..73 93   Minus

BS15108.complete Sequence

533 bp assembled on 2006-11-01

GenBank Submission: FJ637874

> BS15108.complete
GAAGTTATCAGTCGACATGTCCGCCAAGCAAAACCCAAAAAAGTTAAAGT
GGGCGCTGGACTTTAACGGGAGCAAAAATGCTGATATTCCTTCGCCGCTG
GGCTACAATCCATCTGCTTTGGTGAACCAGAGTGAAGTGGTGCGCGACCA
GCGCCTGGTCATCAAGAAGTCGTGGGACCTTGCCCTGGGACCTCTTAAGA
ACATTCCCATGAATCTATTCATCATGTACATGTCAGGAAACTCGATTTCC
ATTTTTCCCATCATGATGGTCGGCATGATGCTGATCCGGCCTATCAAGGC
CATCTTCACCACCCAGGTGACTTCCAAAATGGCGGAGGGGGCCCAGGGAA
CTGGCCAGCGCATCGTCTACTTCCTGGGCAACCTAGCAAACGTGGCTTTG
GCCCTCTACAAGTGCCAGAGCATGGGGCTCCTCCCCACCCACGCCTCCGA
TTGGTTGGCATTTGTCCAGCCTCAGACACGCCTGGAATATTACGGCGGAG
GAATTTCGTTTGTCTAGAAGCTTTCTAGACCAT

BS15108.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11137-RB 501 CG11137-PB 1..501 17..517 2505 100 Plus
CG11137-RA 501 CG11137-PA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11137-RB 957 CG11137-RB 91..592 16..517 2510 100 Plus
CG11137-RA 644 CG11137-RA 91..592 16..517 2510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22867540..22867854 517..203 1575 100 Minus
3L 28110227 3L 22867907..22868038 202..71 660 100 Minus
3L 28110227 3L 22868097..22868153 72..16 285 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:26:38 has no hits.

BS15108.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:36 Download gff for BS15108.complete
Subject Subject Range Query Range Percent Splice Strand
CG11137-RA 1..501 17..517 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:16 Download gff for BS15108.complete
Subject Subject Range Query Range Percent Splice Strand
CG11137-RA 77..586 9..524 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:29 Download gff for BS15108.complete
Subject Subject Range Query Range Percent Splice Strand
CG11137-RA 92..592 17..517 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:36 Download gff for BS15108.complete
Subject Subject Range Query Range Percent Splice Strand
CG11137-RA 77..586 9..524 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:59 Download gff for BS15108.complete
Subject Subject Range Query Range Percent Splice Strand
CG11137-RA 92..592 17..517 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:59 Download gff for BS15108.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22867540..22867854 203..517 100 <- Minus
3L 22867907..22868036 73..202 100 <- Minus
3L 22868097..22868152 17..72 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:29 Download gff for BS15108.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22860640..22860954 203..517 100 <- Minus
arm_3L 22861007..22861136 73..202 100 <- Minus
arm_3L 22861197..22861252 17..72 100   Minus

BS15108.pep Sequence

Translation from 16 to 516

> BS15108.pep
MSAKQNPKKLKWALDFNGSKNADIPSPLGYNPSALVNQSEVVRDQRLVIK
KSWDLALGPLKNIPMNLFIMYMSGNSISIFPIMMVGMMLIRPIKAIFTTQ
VTSKMAEGAQGTGQRIVYFLGNLANVALALYKCQSMGLLPTHASDWLAFV
QPQTRLEYYGGGISFV*

BS15108.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11137-PB 166 CG11137-PB 1..166 1..166 856 100 Plus
CG11137-PA 166 CG11137-PA 1..166 1..166 856 100 Plus