Clone Sequence Records
BS15112.3prime Sequence
366 bp (366 high quality bases) assembled on 2006-10-24
> BS15112.3prime
ATGGTCTAGAAAGCTTCTCCGTTTTGGAGGCGTTATTCGCTCCATCCTGA
ATGTGGAGGCGACCAGTGAGGAGAGTAGCAGTAGTCCTTTGATCTCCCAG
GTCATCTCCGCAGTCCATGGGCACATCGGAATCCTCCTCATCCACATTGA
TGTATCCACTTCGCGGAGCCTTCCTGCTCTTTAGGCAATCCCAGGAATTC
CGACAGCGACTACGTGACATGGCGTAGACCAGTGCAGCCAGAACGAAAAT
GCCAACGAGCACGGAAATTGGCAGCCATATGTATTGACCGTCGTCCGGAT
GCAGTATGTCCGGTTCAGGACTAATGGTCGTCTGAGGCTCAAGTAACTTC
ATGTCGACTGATAACT
BS15112.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5039-PA | 336 | CG5039-RA | 1..329 | 352..24 | 1620 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5039-RA | 719 | CG5039-RA | 95..423 | 352..24 | 1630 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25678968..25679159 | 234..43 | 930 | 99 | Minus |
3R | 32079331 | 3R | 25678777..25678901 | 352..228 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:25:40 has no hits.
BS15112.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:14 Download gff for
BS15112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-PA | 1..336 | 17..352 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:38 Download gff for
BS15112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-PA | 1..336 | 17..352 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:39:55 Download gff for
BS15112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 95..430 | 17..352 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:49 Download gff for
BS15112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 95..430 | 17..352 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:49 Download gff for
BS15112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25678777..25678899 | 230..352 | 100 | -> | Minus |
3R | 25678973..25679158 | 44..229 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:39:55 Download gff for
BS15112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21504499..21504621 | 230..352 | 100 | -> | Minus |
arm_3R | 21504695..21504880 | 44..229 | 99 | -> | Minus |
BS15112.5prime Sequence
366 bp (366 high quality bases) assembled on 2006-10-23
> BS15112.5prime
GAAGTTATCAGTCGACATGAAGTTACTTGAGCCTCAGACGACCATTAGTC
CTGAACCGGACATACTGCATCCGGACGACGGTCAATACATATGGCTGCCA
ATTTCCGTGCTCGTTGGCATTTTCGTTCTGGCTGCACTGGTCTACGCCAT
GTCACGTAGTCGCTGTCGGAATTCCTGGGATTGCCTAAAGAGCAGGAAGG
CTCCGCGAAGTGGATACATCAATGTGGATGAGGAGGATTCCGATGTGCCC
ATGGACTGCGGAGATGAACTGGGAGATCAAAGGACTACTGCTACTCTCCT
CACTGGTCGCCTCCACATTCAGGATGGAGCGAATAACGCCTCCAATGCCT
AGAAGCTTTCTAGACC
BS15112.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5039-PA | 336 | CG5039-RA | 1..336 | 17..352 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5039-RA | 719 | CG5039-RA | 95..430 | 17..352 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:53:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25678968..25679159 | 135..326 | 945 | 99.5 | Plus |
3R | 32079331 | 3R | 25678777..25678901 | 17..141 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:53:25 has no hits.
BS15112.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:15 Download gff for
BS15112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-PA | 1..336 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:39 Download gff for
BS15112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-PA | 1..336 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:29:53 Download gff for
BS15112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 95..430 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:06:22 Download gff for
BS15112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 95..430 | 17..352 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:06:22 Download gff for
BS15112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25678777..25678899 | 17..139 | 100 | -> | Plus |
3R | 25678973..25679158 | 140..325 | 100 | -> | Plus |
3R | 25679214..25679240 | 326..352 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:29:53 Download gff for
BS15112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21504499..21504621 | 17..139 | 100 | -> | Plus |
arm_3R | 21504695..21504880 | 140..325 | 100 | -> | Plus |
arm_3R | 21504936..21504962 | 326..352 | 100 | | Plus |
BS15112.complete Sequence
368 bp assembled on 2006-11-01
GenBank Submission: FJ637876
> BS15112.complete
GAAGTTATCAGTCGACATGAAGTTACTTGAGCCTCAGACGACCATTAGTC
CTGAACCGGACATACTGCATCCGGACGACGGTCAATACATATGGCTGCCA
ATTTCCGTGCTCGTTGGCATTTTCGTTCTGGCTGCACTGGTCTACGCCAT
GTCACGTAGTCGCTGTCGGAATTCCTGGGATTGCCTAAAGAGCAGGAAGG
CTCCGCGAAGTGGATACATCAATGTGGATGAGGAGGATTCCGATGTGCCC
ATGGACTGCGGAGATGAACTGGGAGATCAAAGGACTACTGCTACTCTCCT
CACTGGTCGCCTCCACATTCAGGATGGAGCGAATAACGCCTCCAATGCCT
AGAAGCTTTCTAGACCAT
BS15112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5039-RA | 336 | CG5039-PA | 1..336 | 17..352 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5039-RA | 719 | CG5039-RA | 95..430 | 17..352 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25678968..25679159 | 135..326 | 945 | 99.5 | Plus |
3R | 32079331 | 3R | 25678777..25678901 | 17..141 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:33:06 has no hits.
BS15112.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:38 Download gff for
BS15112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 1..336 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:17 Download gff for
BS15112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 66..401 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:03 Download gff for
BS15112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 95..430 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:38 Download gff for
BS15112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 66..401 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:53 Download gff for
BS15112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 95..430 | 17..352 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:53 Download gff for
BS15112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25678777..25678899 | 17..139 | 100 | -> | Plus |
3R | 25678973..25679158 | 140..325 | 100 | -> | Plus |
3R | 25679214..25679240 | 326..352 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:03 Download gff for
BS15112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21504499..21504621 | 17..139 | 100 | -> | Plus |
arm_3R | 21504695..21504880 | 140..325 | 100 | -> | Plus |
arm_3R | 21504936..21504962 | 326..352 | 100 | | Plus |
BS15112.pep Sequence
Translation from 16 to 351
> BS15112.pep
MKLLEPQTTISPEPDILHPDDGQYIWLPISVLVGIFVLAALVYAMSRSRC
RNSWDCLKSRKAPRSGYINVDEEDSDVPMDCGDELGDQRTTATLLTGRLH
IQDGANNASNA*
BS15112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5039-PA | 111 | CG5039-PA | 1..111 | 1..111 | 587 | 100 | Plus |