Clone BS15112 Report

Search the DGRC for BS15112

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:151
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG5039-RA
Protein status:BS15112.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15112.3prime Sequence

366 bp (366 high quality bases) assembled on 2006-10-24

> BS15112.3prime
ATGGTCTAGAAAGCTTCTCCGTTTTGGAGGCGTTATTCGCTCCATCCTGA
ATGTGGAGGCGACCAGTGAGGAGAGTAGCAGTAGTCCTTTGATCTCCCAG
GTCATCTCCGCAGTCCATGGGCACATCGGAATCCTCCTCATCCACATTGA
TGTATCCACTTCGCGGAGCCTTCCTGCTCTTTAGGCAATCCCAGGAATTC
CGACAGCGACTACGTGACATGGCGTAGACCAGTGCAGCCAGAACGAAAAT
GCCAACGAGCACGGAAATTGGCAGCCATATGTATTGACCGTCGTCCGGAT
GCAGTATGTCCGGTTCAGGACTAATGGTCGTCTGAGGCTCAAGTAACTTC
ATGTCGACTGATAACT

BS15112.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5039-PA 336 CG5039-RA 1..329 352..24 1620 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5039-RA 719 CG5039-RA 95..423 352..24 1630 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25678968..25679159 234..43 930 99 Minus
3R 32079331 3R 25678777..25678901 352..228 625 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:25:40 has no hits.

BS15112.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:14 Download gff for BS15112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5039-PA 1..336 17..352 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:38 Download gff for BS15112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5039-PA 1..336 17..352 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:39:55 Download gff for BS15112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5039-RA 95..430 17..352 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:49 Download gff for BS15112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5039-RA 95..430 17..352 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:49 Download gff for BS15112.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25678777..25678899 230..352 100 -> Minus
3R 25678973..25679158 44..229 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:39:55 Download gff for BS15112.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21504499..21504621 230..352 100 -> Minus
arm_3R 21504695..21504880 44..229 99 -> Minus

BS15112.5prime Sequence

366 bp (366 high quality bases) assembled on 2006-10-23

> BS15112.5prime
GAAGTTATCAGTCGACATGAAGTTACTTGAGCCTCAGACGACCATTAGTC
CTGAACCGGACATACTGCATCCGGACGACGGTCAATACATATGGCTGCCA
ATTTCCGTGCTCGTTGGCATTTTCGTTCTGGCTGCACTGGTCTACGCCAT
GTCACGTAGTCGCTGTCGGAATTCCTGGGATTGCCTAAAGAGCAGGAAGG
CTCCGCGAAGTGGATACATCAATGTGGATGAGGAGGATTCCGATGTGCCC
ATGGACTGCGGAGATGAACTGGGAGATCAAAGGACTACTGCTACTCTCCT
CACTGGTCGCCTCCACATTCAGGATGGAGCGAATAACGCCTCCAATGCCT
AGAAGCTTTCTAGACC

BS15112.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5039-PA 336 CG5039-RA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5039-RA 719 CG5039-RA 95..430 17..352 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25678968..25679159 135..326 945 99.5 Plus
3R 32079331 3R 25678777..25678901 17..141 625 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:53:25 has no hits.

BS15112.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:15 Download gff for BS15112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5039-PA 1..336 17..352 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:39 Download gff for BS15112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5039-PA 1..336 17..352 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:29:53 Download gff for BS15112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5039-RA 95..430 17..352 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:06:22 Download gff for BS15112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5039-RA 95..430 17..352 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:06:22 Download gff for BS15112.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25678777..25678899 17..139 100 -> Plus
3R 25678973..25679158 140..325 100 -> Plus
3R 25679214..25679240 326..352 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:29:53 Download gff for BS15112.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21504499..21504621 17..139 100 -> Plus
arm_3R 21504695..21504880 140..325 100 -> Plus
arm_3R 21504936..21504962 326..352 100   Plus

BS15112.complete Sequence

368 bp assembled on 2006-11-01

GenBank Submission: FJ637876

> BS15112.complete
GAAGTTATCAGTCGACATGAAGTTACTTGAGCCTCAGACGACCATTAGTC
CTGAACCGGACATACTGCATCCGGACGACGGTCAATACATATGGCTGCCA
ATTTCCGTGCTCGTTGGCATTTTCGTTCTGGCTGCACTGGTCTACGCCAT
GTCACGTAGTCGCTGTCGGAATTCCTGGGATTGCCTAAAGAGCAGGAAGG
CTCCGCGAAGTGGATACATCAATGTGGATGAGGAGGATTCCGATGTGCCC
ATGGACTGCGGAGATGAACTGGGAGATCAAAGGACTACTGCTACTCTCCT
CACTGGTCGCCTCCACATTCAGGATGGAGCGAATAACGCCTCCAATGCCT
AGAAGCTTTCTAGACCAT

BS15112.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5039-RA 336 CG5039-PA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5039-RA 719 CG5039-RA 95..430 17..352 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25678968..25679159 135..326 945 99.5 Plus
3R 32079331 3R 25678777..25678901 17..141 625 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:33:06 has no hits.

BS15112.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:38 Download gff for BS15112.complete
Subject Subject Range Query Range Percent Splice Strand
CG5039-RA 1..336 17..352 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:17 Download gff for BS15112.complete
Subject Subject Range Query Range Percent Splice Strand
CG5039-RA 66..401 17..352 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:03 Download gff for BS15112.complete
Subject Subject Range Query Range Percent Splice Strand
CG5039-RA 95..430 17..352 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:38 Download gff for BS15112.complete
Subject Subject Range Query Range Percent Splice Strand
CG5039-RA 66..401 17..352 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:53 Download gff for BS15112.complete
Subject Subject Range Query Range Percent Splice Strand
CG5039-RA 95..430 17..352 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:53 Download gff for BS15112.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25678777..25678899 17..139 100 -> Plus
3R 25678973..25679158 140..325 100 -> Plus
3R 25679214..25679240 326..352 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:03 Download gff for BS15112.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21504499..21504621 17..139 100 -> Plus
arm_3R 21504695..21504880 140..325 100 -> Plus
arm_3R 21504936..21504962 326..352 100   Plus

BS15112.pep Sequence

Translation from 16 to 351

> BS15112.pep
MKLLEPQTTISPEPDILHPDDGQYIWLPISVLVGIFVLAALVYAMSRSRC
RNSWDCLKSRKAPRSGYINVDEEDSDVPMDCGDELGDQRTTATLLTGRLH
IQDGANNASNA*

BS15112.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5039-PA 111 CG5039-PA 1..111 1..111 587 100 Plus