Clone BS15115 Report

Search the DGRC for BS15115

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:151
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG7988-RA
Protein status:BS15115.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15115.3prime Sequence

862 bp (739 high quality bases) assembled on 2006-10-23

> BS15115.3prime
ATGGTCTAGAAAGCTTTTACTCAGATTCAAGCTTCAGGGCAGCAAGGCTC
GTCTCCGTTTCCGTGATCAGTTCATCCTCGTTTACCTTCAAGGGAGCACA
TCGTGTCCAGAACGCTTCGTCGTTGCTACCGGGCAAGGATTCCTGGGGGA
ACGTGTGCAGCGACAAGTCGTTGAATACATTGTGGTGCTCGTAGTCATCT
TCCAGCGGAGTTTCTGTACAATGTTCTACTATTCTTGTTATGTGGTCATC
CTGGTTTCTGGGCGTCATGGTCAGCATTTCGAAGCTATTCGAGATGAGAA
AAACGTTGGGCAGTGTCTCCCGCTTCCAATTGGACCACAGGATGTTATGC
ATCAGAGCGTAGGGGCAGTGTGGCAGATAATAGAGCGTGGGCACCGTCGC
CTCGTGCTTGCCCGCGCAGTCTTTGCTCATTATACAACCGTCGAACAGCC
GGATCAGTTCCTTCTCGCTGTCTCTGAAGACGGGATCGAAGTACAAGGCC
TCTCTGATCTTGTGATGCCGATGCAGTCCAATCACAAATGCAGCCTGATG
CAGGGCATGGTAGGTGCGGGAGAAAGGTCCCAGTCCCAGGCAAACAATTC
GCTCCAACGGTTTCCTAATGCCCTCCAGTTGCTGCTGCAGCGCTTCCATG
GCCACCAGAAAGTAGTCGCTTTGGCACATCTCGGTGCACAGGTTCTCAAG
GCGCGGCTGAAATTTCTCCACATTCACATCCGGACAGTCGATTAGGTAAT
CGCTTTCGGATTTATGGCGATCCCGCCGCCTCAGGCACTTACGAGCCATC
CATTTCTTGCGCGTTACCACCTGAAAAATCCTCTCCAGAGTTCGACATGT
CGACTGATAACT

BS15115.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7988-PA 831 CG7988-RA 21..827 827..21 4035 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7988-RA 885 CG7988-RA 33..864 848..16 4125 99.8 Minus
CG7183-RA 2367 CG7183-RA 1..142 706..848 690 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18220764..18221452 704..16 3430 99.9 Minus
3R 32079331 3R 18220558..18220701 848..704 675 99.3 Minus
Blast to na_te.dros performed on 2015-02-13 15:27:56 has no hits.

BS15115.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:20 Download gff for BS15115.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7988-PA 1..831 17..848 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:46 Download gff for BS15115.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7988-PA 1..831 17..848 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:54:27 Download gff for BS15115.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 31..864 16..851 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:52:28 Download gff for BS15115.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 31..864 16..851 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:52:28 Download gff for BS15115.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18220556..18220700 705..851 98 -> Minus
3R 18220764..18221447 21..704 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:54:27 Download gff for BS15115.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14046278..14046422 705..851 98 -> Minus
arm_3R 14046486..14047169 21..704 100 -> Minus

BS15115.5prime Sequence

861 bp (757 high quality bases) assembled on 2006-10-23

> BS15115.5prime
GAAGTTATCAGTCGACATGTCGAACTCTGGAGAGGATTTTCAGGTGGTAA
CGCGCAAGAAATGGATGGCTCGTAAGTGCCTGAGGCGGCGGGATCGCCAT
AAATCCGAAAGCGATTACCTAATCGACTGTCCGGATGTGAATGTGGAGAA
ATTTCAGCCGCGCCTTGAGAACCTGTGCACCGAGATGTGCCAAAGCGACT
ACTTTCTGGTGGCCATGGAAGCGCTGCAGCAGCAACTGGAGGGCATTAGG
AAACCGTTGGAGCGAATTGTTTGCCTGGGACTGGGACCTTTCTCCCGCAC
CTACCATGCCCTGCATCAGGCTGCATTTGTGATTGGACTGCATCGGCATC
ACAAGATCAGAGAGGCCTTGTACTTCGATCCCGTCTTCAGAGACAGCGAG
AAGGAACTGATCCGGCTGTTCGACGGTTGTATAATGAGCAAAGACTGCGC
GGGCAAGCACGAGGCGACGGTGCCCACGCTCTATTATCTGCCACACTGCC
CCTACGCTCTGATGCATAACATCCTGTGGTCCAATTGGAAGCGGGAGACA
CTGCCCAACGTTTTTCTCATCTCGAATAGCTTCGAAATGCTGACCATGAC
GCCCAGAAACCAGGATGACCACATAACAAGAATAGTAGAACATTGTACAG
AAACTCCGCTGGAAGATGACTACGAGCACCACAATGTATTCAACGACTTG
TCGCTGCACACGTTCCCCCAGGAATCCTTGCCCGGTAGCAACGACGAAGC
GTTCTGGACACGATGTGCTCCCTTGAAGGTAAACGAGGATGAACTGATCA
CGGAAACGGAGACGAGCCTTGCTGCCCTGAAGCTTGAATCTGAATAAAAG
CTTTCTAGACC

BS15115.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7988-PA 831 CG7988-RA 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7988-RA 885 CG7988-RA 33..864 17..848 4160 100 Plus
CG7183-RA 2367 CG7183-RA 1..142 158..17 710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18220764..18221452 160..848 3445 100 Plus
3R 32079331 3R 18220558..18220701 17..160 720 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:22:32 has no hits.

BS15115.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:21 Download gff for BS15115.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7988-PA 1..831 17..847 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:48 Download gff for BS15115.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7988-PA 1..831 17..847 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:31 Download gff for BS15115.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 31..864 14..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:20 Download gff for BS15115.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 31..864 14..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:20 Download gff for BS15115.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18220556..18220700 14..159 99 -> Plus
3R 18220764..18221452 160..848 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:31 Download gff for BS15115.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14046278..14046422 14..159 99 -> Plus
arm_3R 14046486..14047174 160..848 100   Plus

BS15115.complete Sequence

863 bp assembled on 2006-11-01

GenBank Submission: FJ638865

> BS15115.complete
GAAGTTATCAGTCGACATGTCGAACTCTGGAGAGGATTTTCAGGTGGTAA
CGCGCAAGAAATGGATGGCTCGTAAGTGCCTGAGGCGGCGGGATCGCCAT
AAATCCGAAAGCGATTACCTAATCGACTGTCCGGATGTGAATGTGGAGAA
ATTTCAGCCGCGCCTTGAGAACCTGTGCACCGAGATGTGCCAAAGCGACT
ACTTTCTGGTGGCCATGGAAGCGCTGCAGCAGCAACTGGAGGGCATTAGG
AAACCGTTGGAGCGAATTGTTTGCCTGGGACTGGGACCTTTCTCCCGCAC
CTACCATGCCCTGCATCAGGCTGCATTTGTGATTGGACTGCATCGGCATC
ACAAGATCAGAGAGGCCTTGTACTTCGATCCCGTCTTCAGAGACAGCGAG
AAGGAACTGATCCGGCTGTTCGACGGTTGTATAATGAGCAAAGACTGCGC
GGGCAAGCACGAGGCGACGGTGCCCACGCTCTATTATCTGCCACACTGCC
CCTACGCTCTGATGCATAACATCCTGTGGTCCAATTGGAAGCGGGAGACA
CTGCCCAACGTTTTTCTCATCTCGAATAGCTTCGAAATGCTGACCATGAC
GCCCAGAAACCAGGATGACCACATAACAAGAATAGTAGAACATTGTACAG
AAACTCCGCTGGAAGATGACTACGAGCACCACAATGTATTCAACGACTTG
TCGCTGCACACGTTCCCCCAGGAATCCTTGCCCGGTAGCAACGACGAAGC
GTTCTGGACACGATGTGCTCCCTTGAAGGTAAACGAGGATGAACTGATCA
CGGAAACGGAGACGAGCCTTGCTGCCCTGAAGCTTGAATCTGAATAAAAG
CTTTCTAGACCAT

BS15115.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7988-RA 831 CG7988-PA 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7988-RA 885 CG7988-RA 33..864 17..848 4160 100 Plus
CG7183-RA 2367 CG7183-RA 1..142 158..17 710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18220764..18221452 160..848 3445 100 Plus
3R 32079331 3R 18220558..18220701 17..160 720 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:48:26 has no hits.

BS15115.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:39 Download gff for BS15115.complete
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 1..831 17..847 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:19 Download gff for BS15115.complete
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 31..864 14..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:53 Download gff for BS15115.complete
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 33..861 17..845 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:40 Download gff for BS15115.complete
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 31..864 14..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:19 Download gff for BS15115.complete
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 33..861 17..845 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:19 Download gff for BS15115.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18220558..18220700 17..159 100 -> Plus
3R 18220764..18221449 160..845 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:53 Download gff for BS15115.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14046280..14046422 17..159 100 -> Plus
arm_3R 14046486..14047171 160..845 100   Plus

BS15115.pep Sequence

Translation from 16 to 846

> BS15115.pep
MSNSGEDFQVVTRKKWMARKCLRRRDRHKSESDYLIDCPDVNVEKFQPRL
ENLCTEMCQSDYFLVAMEALQQQLEGIRKPLERIVCLGLGPFSRTYHALH
QAAFVIGLHRHHKIREALYFDPVFRDSEKELIRLFDGCIMSKDCAGKHEA
TVPTLYYLPHCPYALMHNILWSNWKRETLPNVFLISNSFEMLTMTPRNQD
DHITRIVEHCTETPLEDDYEHHNVFNDLSLHTFPQESLPGSNDEAFWTRC
APLKVNEDELITETETSLAALKLESE*

BS15115.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7988-PA 276 CG7988-PA 1..276 1..276 1494 100 Plus