Clone Sequence Records
BS15115.3prime Sequence
862 bp (739 high quality bases) assembled on 2006-10-23
> BS15115.3prime
ATGGTCTAGAAAGCTTTTACTCAGATTCAAGCTTCAGGGCAGCAAGGCTC
GTCTCCGTTTCCGTGATCAGTTCATCCTCGTTTACCTTCAAGGGAGCACA
TCGTGTCCAGAACGCTTCGTCGTTGCTACCGGGCAAGGATTCCTGGGGGA
ACGTGTGCAGCGACAAGTCGTTGAATACATTGTGGTGCTCGTAGTCATCT
TCCAGCGGAGTTTCTGTACAATGTTCTACTATTCTTGTTATGTGGTCATC
CTGGTTTCTGGGCGTCATGGTCAGCATTTCGAAGCTATTCGAGATGAGAA
AAACGTTGGGCAGTGTCTCCCGCTTCCAATTGGACCACAGGATGTTATGC
ATCAGAGCGTAGGGGCAGTGTGGCAGATAATAGAGCGTGGGCACCGTCGC
CTCGTGCTTGCCCGCGCAGTCTTTGCTCATTATACAACCGTCGAACAGCC
GGATCAGTTCCTTCTCGCTGTCTCTGAAGACGGGATCGAAGTACAAGGCC
TCTCTGATCTTGTGATGCCGATGCAGTCCAATCACAAATGCAGCCTGATG
CAGGGCATGGTAGGTGCGGGAGAAAGGTCCCAGTCCCAGGCAAACAATTC
GCTCCAACGGTTTCCTAATGCCCTCCAGTTGCTGCTGCAGCGCTTCCATG
GCCACCAGAAAGTAGTCGCTTTGGCACATCTCGGTGCACAGGTTCTCAAG
GCGCGGCTGAAATTTCTCCACATTCACATCCGGACAGTCGATTAGGTAAT
CGCTTTCGGATTTATGGCGATCCCGCCGCCTCAGGCACTTACGAGCCATC
CATTTCTTGCGCGTTACCACCTGAAAAATCCTCTCCAGAGTTCGACATGT
CGACTGATAACT
BS15115.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7988-PA | 831 | CG7988-RA | 21..827 | 827..21 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7988-RA | 885 | CG7988-RA | 33..864 | 848..16 | 4125 | 99.8 | Minus |
CG7183-RA | 2367 | CG7183-RA | 1..142 | 706..848 | 690 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18220764..18221452 | 704..16 | 3430 | 99.9 | Minus |
3R | 32079331 | 3R | 18220558..18220701 | 848..704 | 675 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:27:56 has no hits.
BS15115.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:20 Download gff for
BS15115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-PA | 1..831 | 17..848 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:46 Download gff for
BS15115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-PA | 1..831 | 17..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:54:27 Download gff for
BS15115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 31..864 | 16..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:52:28 Download gff for
BS15115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 31..864 | 16..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:52:28 Download gff for
BS15115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18220556..18220700 | 705..851 | 98 | -> | Minus |
3R | 18220764..18221447 | 21..704 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:54:27 Download gff for
BS15115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14046278..14046422 | 705..851 | 98 | -> | Minus |
arm_3R | 14046486..14047169 | 21..704 | 100 | -> | Minus |
BS15115.5prime Sequence
861 bp (757 high quality bases) assembled on 2006-10-23
> BS15115.5prime
GAAGTTATCAGTCGACATGTCGAACTCTGGAGAGGATTTTCAGGTGGTAA
CGCGCAAGAAATGGATGGCTCGTAAGTGCCTGAGGCGGCGGGATCGCCAT
AAATCCGAAAGCGATTACCTAATCGACTGTCCGGATGTGAATGTGGAGAA
ATTTCAGCCGCGCCTTGAGAACCTGTGCACCGAGATGTGCCAAAGCGACT
ACTTTCTGGTGGCCATGGAAGCGCTGCAGCAGCAACTGGAGGGCATTAGG
AAACCGTTGGAGCGAATTGTTTGCCTGGGACTGGGACCTTTCTCCCGCAC
CTACCATGCCCTGCATCAGGCTGCATTTGTGATTGGACTGCATCGGCATC
ACAAGATCAGAGAGGCCTTGTACTTCGATCCCGTCTTCAGAGACAGCGAG
AAGGAACTGATCCGGCTGTTCGACGGTTGTATAATGAGCAAAGACTGCGC
GGGCAAGCACGAGGCGACGGTGCCCACGCTCTATTATCTGCCACACTGCC
CCTACGCTCTGATGCATAACATCCTGTGGTCCAATTGGAAGCGGGAGACA
CTGCCCAACGTTTTTCTCATCTCGAATAGCTTCGAAATGCTGACCATGAC
GCCCAGAAACCAGGATGACCACATAACAAGAATAGTAGAACATTGTACAG
AAACTCCGCTGGAAGATGACTACGAGCACCACAATGTATTCAACGACTTG
TCGCTGCACACGTTCCCCCAGGAATCCTTGCCCGGTAGCAACGACGAAGC
GTTCTGGACACGATGTGCTCCCTTGAAGGTAAACGAGGATGAACTGATCA
CGGAAACGGAGACGAGCCTTGCTGCCCTGAAGCTTGAATCTGAATAAAAG
CTTTCTAGACC
BS15115.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7988-PA | 831 | CG7988-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7988-RA | 885 | CG7988-RA | 33..864 | 17..848 | 4160 | 100 | Plus |
CG7183-RA | 2367 | CG7183-RA | 1..142 | 158..17 | 710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18220764..18221452 | 160..848 | 3445 | 100 | Plus |
3R | 32079331 | 3R | 18220558..18220701 | 17..160 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:22:32 has no hits.
BS15115.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:21 Download gff for
BS15115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:48 Download gff for
BS15115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:31 Download gff for
BS15115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 31..864 | 14..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:20 Download gff for
BS15115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 31..864 | 14..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:20 Download gff for
BS15115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18220556..18220700 | 14..159 | 99 | -> | Plus |
3R | 18220764..18221452 | 160..848 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:31 Download gff for
BS15115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14046278..14046422 | 14..159 | 99 | -> | Plus |
arm_3R | 14046486..14047174 | 160..848 | 100 | | Plus |
BS15115.complete Sequence
863 bp assembled on 2006-11-01
GenBank Submission: FJ638865
> BS15115.complete
GAAGTTATCAGTCGACATGTCGAACTCTGGAGAGGATTTTCAGGTGGTAA
CGCGCAAGAAATGGATGGCTCGTAAGTGCCTGAGGCGGCGGGATCGCCAT
AAATCCGAAAGCGATTACCTAATCGACTGTCCGGATGTGAATGTGGAGAA
ATTTCAGCCGCGCCTTGAGAACCTGTGCACCGAGATGTGCCAAAGCGACT
ACTTTCTGGTGGCCATGGAAGCGCTGCAGCAGCAACTGGAGGGCATTAGG
AAACCGTTGGAGCGAATTGTTTGCCTGGGACTGGGACCTTTCTCCCGCAC
CTACCATGCCCTGCATCAGGCTGCATTTGTGATTGGACTGCATCGGCATC
ACAAGATCAGAGAGGCCTTGTACTTCGATCCCGTCTTCAGAGACAGCGAG
AAGGAACTGATCCGGCTGTTCGACGGTTGTATAATGAGCAAAGACTGCGC
GGGCAAGCACGAGGCGACGGTGCCCACGCTCTATTATCTGCCACACTGCC
CCTACGCTCTGATGCATAACATCCTGTGGTCCAATTGGAAGCGGGAGACA
CTGCCCAACGTTTTTCTCATCTCGAATAGCTTCGAAATGCTGACCATGAC
GCCCAGAAACCAGGATGACCACATAACAAGAATAGTAGAACATTGTACAG
AAACTCCGCTGGAAGATGACTACGAGCACCACAATGTATTCAACGACTTG
TCGCTGCACACGTTCCCCCAGGAATCCTTGCCCGGTAGCAACGACGAAGC
GTTCTGGACACGATGTGCTCCCTTGAAGGTAAACGAGGATGAACTGATCA
CGGAAACGGAGACGAGCCTTGCTGCCCTGAAGCTTGAATCTGAATAAAAG
CTTTCTAGACCAT
BS15115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7988-RA | 831 | CG7988-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7988-RA | 885 | CG7988-RA | 33..864 | 17..848 | 4160 | 100 | Plus |
CG7183-RA | 2367 | CG7183-RA | 1..142 | 158..17 | 710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18220764..18221452 | 160..848 | 3445 | 100 | Plus |
3R | 32079331 | 3R | 18220558..18220701 | 17..160 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:48:26 has no hits.
BS15115.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:39 Download gff for
BS15115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:19 Download gff for
BS15115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 31..864 | 14..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:53 Download gff for
BS15115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 33..861 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:40 Download gff for
BS15115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 31..864 | 14..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:19 Download gff for
BS15115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 33..861 | 17..845 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:19 Download gff for
BS15115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18220558..18220700 | 17..159 | 100 | -> | Plus |
3R | 18220764..18221449 | 160..845 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:53 Download gff for
BS15115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14046280..14046422 | 17..159 | 100 | -> | Plus |
arm_3R | 14046486..14047171 | 160..845 | 100 | | Plus |
BS15115.pep Sequence
Translation from 16 to 846
> BS15115.pep
MSNSGEDFQVVTRKKWMARKCLRRRDRHKSESDYLIDCPDVNVEKFQPRL
ENLCTEMCQSDYFLVAMEALQQQLEGIRKPLERIVCLGLGPFSRTYHALH
QAAFVIGLHRHHKIREALYFDPVFRDSEKELIRLFDGCIMSKDCAGKHEA
TVPTLYYLPHCPYALMHNILWSNWKRETLPNVFLISNSFEMLTMTPRNQD
DHITRIVEHCTETPLEDDYEHHNVFNDLSLHTFPQESLPGSNDEAFWTRC
APLKVNEDELITETETSLAALKLESE*
BS15115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7988-PA | 276 | CG7988-PA | 1..276 | 1..276 | 1494 | 100 | Plus |