Clone BS15123 Report

Search the DGRC for BS15123

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:151
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptbetaTub56D-RB
Protein status:BS15123.pep: full length peptide match
Sequenced Size:1376

Clone Sequence Records

BS15123.complete Sequence

1376 bp assembled on 2009-12-07

GenBank Submission: KX806269

> BS15123.complete
GAAGTTATCAGTCGACATGAGGGAAATCGTTCACATCCAAGCTGGTCAGT
GCGGCAACCAAATCGGCGCCAAGTTCTGGGAGATCATCTCCGATGAGCAT
GGCATCGATGCCACCGGCGCCTACCACGGTGACAGCGACCTGCAGCTGGA
GCGCATCAATGTGTACTACAATGAGGCGTCCGGTGGCAAGTACGTGCCCC
GCGCTGTCCTTGTCGATCTGGAGCCCGGCACCATGGACTCTGTGCGATCG
GGACCTTTCGGCCAGATCTTCAGGCCCGACAACTTTGTGTTCGGCCAGTC
GGGTGCCGGCAACAACTGGGCCAAGGGTCATTACACAGAGGGTGCTGAGC
TGGTGGACTCAGTGCTCGATGTTGTCCGCAAGGAGGCCGAATCCTGCGAC
TGCCTGCAAGGCTTCCAACTCACACACTCCCTTGGCGGCGGCACTGGCTC
CGGTATGGGAACCCTGCTGATTTCCAAGATCCGCGAGGAGTACCCCGACA
GGATCATGAACACATACTCGGTTGTGCCGTCGCCCAAGGTGTCGGACACC
GTTGTGGAGCCCTACAACGCCACCCTGTCGGTGCACCAGCTGGTCGAGAA
CACGGACGAGACCTACTGCATCGACAACGAGGCTCTCTACGATATCTGCT
TCCGCACCCTCAAGCTGACGACACCCACATACGGTGACCTGAACCATCTT
GTCTCCCTGACCATGTCCGGCGTAACCACCTGCCTCCGATTCCCCGGCCA
ACTGAACGCTGATCTCCGCAAGCTGGCCGTCAACATGGTGCCCTTCCCAC
GTCTTCACTTCTTCATGCCCGGCTTCGCTCCCCTGACCTCCCGAGGATCC
CAGCAGTACCGCGCCCTCACCGTGCCCGAGCTGACCCAGCAGATGTTCGA
TGCCAAGAACATGATGGCCGCCTGCGACCCACGCCACGGACGCTACCTTA
CCGTCGCCGCCATCTTCCGTGGACGCATGTCCATGAAGGAGGTCGACGAG
CAGATGCTGAACATCCAGAACAAGAACAGCTCCTACTTCGTCGAATGGAT
CCCCAACAACGTGAAGACCGCCGTGTGCGACATCCCGCCCCGTGGTCTGA
AGATGTCCGCCACCTTCATCGGCAACTCCACTGCCATCCAGGAGCTGTTC
AAGCGCATCTCCGAGCAGTTCACCGCTATGTTCAGGCGCAAGGCTTTCTT
GCATTGGTACACCGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCCG
AGAGCAACATGAACGATCTGGTGTCCGAGTACCAGCAGTACCAGGAGGCC
ACCGCCGACGAGGACGCCGAGTTCGAGGAGGAGCAGGAGGCTGAGGTCGA
CGAGAACTAAAAGCTTTCTAGACCAT

BS15123.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
betaTub56D-RB 1344 CG9277-PB 1..1344 17..1360 6720 100 Plus
betaTub56D-RA 1371 CG9277-PA 85..1371 74..1360 6435 100 Plus
betaTub60D-RB 1362 CG3401-PB 1..1310 17..1311 3710 85.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
betaTub56D-RB 1596 CG9277-RB 112..1456 17..1361 6725 100 Plus
betaTub56D-RA 1701 CG9277-RA 274..1561 74..1361 6440 100 Plus
betaTub60D-RB 2515 CG3401-RB 202..1511 17..1311 3710 85.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19447459..19448748 1361..72 6450 100 Minus
2R 25286936 2R 24311194..24312095 410..1311 3010 88.9 Plus
3R 32079331 3R 9408684..9409600 1326..410 2605 85.6 Minus
3R 32079331 3R 27967268..27967592 1295..971 1100 89.2 Minus
3R 32079331 3R 9409679..9410046 390..23 805 81.2 Minus
3R 32079331 3R 27968929..27969185 969..713 805 87.5 Minus
3R 32079331 3R 27972919..27973151 540..308 565 82.8 Minus
2R 25286936 2R 24310905..24311136 177..408 545 82.3 Plus
3R 32079331 3R 27969656..27969829 710..537 465 84.5 Minus
3R 32079331 3R 27974107..27974344 309..72 365 76.9 Minus
2R 25286936 2R 19451433..19451489 73..17 285 100 Minus
2R 25286936 2R 24310720..24310832 72..184 220 79.6 Plus
3R 32079331 3R 27969439..27969535 650..554 215 81.4 Minus
3L 28110227 3L 6531600..6531723 705..828 200 77.4 Plus
Blast to na_te.dros performed on 2014-11-28 02:00:05 has no hits.

BS15123.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:12 Download gff for BS15123.complete
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 129..1470 17..1358 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:19 Download gff for BS15123.complete
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 112..1453 17..1358 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:20 Download gff for BS15123.complete
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 129..1470 17..1358 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:39 Download gff for BS15123.complete
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 112..1453 17..1358 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:39 Download gff for BS15123.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19447462..19448746 74..1358 100 <- Minus
2R 19451433..19451489 17..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:19 Download gff for BS15123.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15334967..15336251 74..1358 100 <- Minus
arm_2R 15338938..15338994 17..73 100   Minus

BS15123.3prime Sequence

652 bp (490 high quality bases) assembled on 2006-10-24

> BS15123.3prime
ATGGTCTAGAAAGCTTTTAGTTCTCGTCGACCTCAGCCTCCTGCTCCTCC
TCGAACTCGGCGTCCTCGTCGGCGGTGGCCTCCTGGTACTGCTGGTACTC
GGACACCAGATCGTTCATGTTGCTCTCGGCCTCGGTGAACTCCATCTCGT
CCATGCCCTCGCCGGTGTACCAATGCAAGAAAGCCTTGCGCCTGAACATA
GCGGTGAACTGCTCGGAGATGCGCTTGAACAGCTCCTGGATGGCAGTGGA
GTTGCCGATGAAGGTGGCGGACATCTTCAGACCACGGGGCGGGATGTCGC
ACACGGCGGTCTTCACGTTGTTGGGGATCCATTCGACGAAGTAGGAGCTG
TTCTTGTTCTGGATGTTCAGCATCTGCTCGTCGACCTCCTTCATGGACAT
GCGTCCACGGAAGATGGCGGCGACGGTAAGGTAGCGTCCGTGGCGTGGGT
CGCAGGCGGCCATCATGTTCTTGGCATCGAACATCTGCTGGGTCAGCTCG
GGCACGGTGAGGGCGCGGTACTGCTGGGATCCTCGGGAGGTCAGGGGAGC
GAAGCCGGGCATGAAAGAAGTGAAGACGTGGGAAGGGCACCCTGTTGACG
GCCAGCTTGCGGAGATCACCGTTCAGTTGGCCGGGGAATTCGGAGGCAGG
TG

BS15123.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9277-PB 1344 betaTub56D-RB 796..1344 565..17 2745 100 Minus
CG9277-PA 1371 betaTub56D-RA 823..1371 565..17 2745 100 Minus
CG9277-PC 1128 betaTub56D-RC 580..1128 565..17 2745 100 Minus
CG9277-PD 1128 betaTub56D-RD 580..1128 565..17 2745 100 Minus
CG4869-PA 1569 betaTub97EF-RA 1249..1490 307..66 760 92.5 Minus
CG3401-PA 1365 betaTub60D-RA 1099..1313 280..66 700 93 Minus
CG3401-PA 1365 betaTub60D-RA 814..1011 565..368 490 89.8 Minus
CG9277-PB 1344 betaTub56D-RB 723..797 639..565 325 97.3 Minus
CG9277-PA 1371 betaTub56D-RA 750..824 639..565 325 97.3 Minus
CG9277-PC 1128 betaTub56D-RC 507..581 639..565 325 97.3 Minus
CG9277-PD 1128 betaTub56D-RD 507..581 639..565 325 97.3 Minus
CG4869-PA 1569 betaTub97EF-RA 1024..1172 532..384 320 88.5 Minus
CG9359-PA 1341 betaTub85D-RA 934..1037 427..324 320 92.3 Minus
CG9359-PA 1341 betaTub85D-RA 1174..1250 187..111 260 93.5 Minus
CG3401-PA 1365 betaTub60D-RA 1018..1091 361..288 245 93.2 Minus
CG9359-PA 1341 betaTub85D-RA 796..902 565..459 235 88.7 Minus
CG9359-PA 1341 betaTub85D-RA 1057..1136 304..225 150 87.5 Minus
CG4869-PA 1569 betaTub97EF-RA 919..992 638..565 145 87.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
betaTub56D-RA 1701 CG9277-RA 927..1561 652..16 3105 99.4 Minus
betaTub56D-RB 1596 CG9277-RB 822..1456 652..16 3105 99.4 Minus
betaTub60D-RB 2515 CG3401-RB 927..1511 652..66 1955 89.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19447459..19448093 16..652 3055 99.4 Plus
2R 25286936 2R 24311524..24312095 638..66 1915 89.4 Minus
3R 32079331 3R 9408684..9409270 51..638 1645 85.7 Plus
3R 32079331 3R 27967268..27967592 82..406 1100 89.2 Plus
3R 32079331 3R 27968929..27969158 408..638 655 86.6 Plus
Blast to na_te.dros performed 2015-02-11 17:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 698..904 497..288 151 55.9 Minus

BS15123.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:36 Download gff for BS15123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9277-PA 738..1371 17..652 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:51:08 Download gff for BS15123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9277-PB 711..1344 17..652 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:54:18 Download gff for BS15123.3prime
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 822..1456 16..652 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:49 Download gff for BS15123.3prime
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 822..1456 16..652 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:49 Download gff for BS15123.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19447459..19448093 16..652 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:54:18 Download gff for BS15123.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15334964..15335598 16..652 99   Plus

BS15123.5prime Sequence

748 bp (707 high quality bases) assembled on 2006-10-23

> BS15123.5prime
GAAGTTATCATTCGACATGAGGGAAATCGTTCACATCCAAGCTGGTCAGT
GCGGCAACCAAATCGGCGCCAAGTTCTGGGAGATCATCTCCGATGAGCAT
GGCATCGATGCCACCGGCGCCTACCACGGTGACAGCGACCTGCAGCTGGA
GCGCATCAATGTGTACTACAATGAGGCGTCCGGTGGCAAGTACGTGCCCC
GCGCTGTCCTTGTCGATCTGGAGCCCGGCACCATGGACTCTGTGCGATCG
GGACCTTTCGGCCAGATCTTCAGGCCCGACAACTTTGTGTTCGGCCAGTC
GGGTGCCGGCAACAACTGGGCCAAGGGTCATTACACAGAGGGTGCTGAGC
TGGTGGACTCAGTGCTCGATGTTGTCCGCAAGGAGGCCGAATCCTGCGAC
TGCCTGCAAGGCTTCCAACTCACACACTCCCTTGGCGGCGGCACTGGCTC
CGGTATGGGAACCCTGCTGATTTCCAAGATCCGCGAGGAGTACCCCGACA
GGATCATGAACACATACTCGGTTGTGCCGTCGCCCAAGGTGTCGGACACC
GTTGTGGAGCCCTACAACGCCACCCTGTCGGTGCACCAGCTGGTCGAGAA
CACGGACGAGACCTACTGCATCGACAACGAGGCTCTCTACGATATCTGCT
TCCGCACCCTCAAGCTGACGACACCCACATACGGTGACCTGAACCATCTT
GTCTCCCTGAACATGTCCGGCGTAACCACCTGCCTCCGATTCCCCGGC

BS15123.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9277-PB 1344 betaTub56D-RB 1..732 17..748 3635 99.8 Plus
CG9277-PA 1371 betaTub56D-RA 85..759 74..748 3350 99.8 Plus
CG9277-PC 1128 betaTub56D-RC 1..516 233..748 2555 99.8 Plus
CG9277-PD 1128 betaTub56D-RD 1..516 233..748 2555 99.8 Plus
CG3401-PA 1365 betaTub60D-RA 396..656 394..654 680 90.4 Plus
CG9359-PA 1341 betaTub85D-RA 421..561 437..577 330 89.3 Plus
CG9359-PA 1341 betaTub85D-RA 244..341 260..357 265 90.8 Plus
CG4869-PA 1569 betaTub97EF-RA 568..641 584..657 220 91.8 Plus
CG3401-PA 1365 betaTub60D-RA 31..92 47..108 210 93.5 Plus
CG3401-PA 1365 betaTub60D-RA 269..360 267..358 185 88 Plus
CG4869-PA 1569 betaTub97EF-RA 280..326 296..342 185 95.7 Plus
CG9359-PA 1341 betaTub85D-RA 628..683 644..699 155 91 Plus
CG9359-PA 1341 betaTub85D-RA 565..617 581..633 140 90.5 Plus
CG9359-PA 1341 betaTub85D-RA 127..158 143..174 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
betaTub56D-RB 1596 CG9277-RB 112..843 17..748 3645 99.9 Plus
betaTub56D-RA 1701 CG9277-RA 274..948 74..748 3360 99.9 Plus
betaTub60D-RB 2515 CG3401-RB 202..948 17..748 1780 82.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19448072..19448748 748..72 3370 99.9 Minus
2R 25286936 2R 24311194..24311532 410..748 1050 87.3 Plus
3R 32079331 3R 9409262..9409600 748..410 900 84.4 Minus
3R 32079331 3R 9409679..9410046 390..23 805 81.2 Minus
3R 32079331 3R 27972919..27973151 540..308 565 82.8 Minus
2R 25286936 2R 24310905..24311136 177..408 545 82.3 Plus
3R 32079331 3R 27969656..27969829 710..537 465 84.5 Minus
3R 32079331 3R 27974107..27974344 309..72 365 76.9 Minus
2R 25286936 2R 19451433..19451489 73..17 285 100 Minus
2R 25286936 2R 24310720..24310832 72..184 220 79.6 Plus
3R 32079331 3R 27969439..27969535 650..554 215 81.4 Minus
Blast to na_te.dros performed on 2015-02-12 10:23:10 has no hits.

BS15123.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:37 Download gff for BS15123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9277-PB 1..732 17..748 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:51:09 Download gff for BS15123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9277-PB 1..732 17..748 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:43 Download gff for BS15123.5prime
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 105..843 10..748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:42 Download gff for BS15123.5prime
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 105..843 10..748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:42 Download gff for BS15123.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19448072..19448746 74..748 99 <- Minus
2R 19451433..19451492 16..73 95 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:43 Download gff for BS15123.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15335577..15336251 74..748 99 <- Minus
arm_2R 15338938..15338997 16..73 95 -> Minus

BS15123.pep Sequence

Translation from 16 to 1359

> BS15123.pep
MREIVHIQAGQCGNQIGAKFWEIISDEHGIDATGAYHGDSDLQLERINVY
YNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN
WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
LISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETY
CIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL
RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVK
TAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG
EGMDEMEFTEAESNMNDLVSEYQQYQEATADEDAEFEEEQEAEVDEN*

BS15123.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
betaTub56D-PB 447 CG9277-PB 1..447 1..447 2357 100 Plus
betaTub56D-PA 456 CG9277-PA 29..456 20..447 2257 100 Plus
betaTub85D-PA 446 CG9359-PA 1..446 1..446 2248 94.6 Plus
betaTub60D-PB 453 CG3401-PB 1..446 1..441 2164 90.6 Plus
betaTub60D-PA 454 CG3401-PA 1..447 1..441 2163 90.4 Plus