Clone BS15128 Report

Search the DGRC for BS15128

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:151
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptAps-RA
Protein status:BS15128.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15128.3prime Sequence

564 bp (564 high quality bases) assembled on 2006-10-24

> BS15128.3prime
ATGGTCTAGAAAGCTTTTACGTCGTAGTGGGAGATGCGGCTGGGGTGGCG
GCATTGGTCAACTTGGGCGGATGCGTGGCGTTCACCACGCGATTCTTGTT
GTCCAGCGTCTTCGAGTGCTGCAGCTGCATCAGATAGTGTTGCTGCGTCG
GCTTATGCAGCGCCAGCTGCGAGAGTGCATCATCGATGGTGAACCACTGG
CGCTTGCGACCGATGCTCCGCGAATCCTCCCACTCGTCCAGTTCCTGAGT
CACGTTCATCACGAACACCTCGGTGCGATGCATGTGGTCATTGTTCTCGA
ATACACCGAGACAACGACCCAGATCGCCAACCACGCCGGCTTCTTCGAGC
ACTTCGCGCACGGCTGTCACCGATGACTCCTCTTCTGGTTCAACGCCGCC
TCCTGGAACGATCCACAACTCCGGGCGACGAGATGAGGTTACCAAGAGTA
CCTCCGCCTCATTCTCCGATTTCACGCAAATACAAGCAGCCCGGCGCCTA
AATCCATCCTTGTCGTAGATGCGAGTCGAGTTGGGCTTCTCCTTGACCAT
GTCGACTGATAACT

BS15128.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6391-PA 534 Aps-RA 1..528 550..23 2615 99.8 Minus
CG6391-PB 534 Aps-RB 1..528 550..23 2615 99.8 Minus
CG6391-PC 534 Aps-RC 1..528 550..23 2615 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
Aps-RC 2744 CG6391-RC 854..1390 552..16 2640 99.4 Minus
Aps-RB 2364 CG6391-RB 1145..1681 552..16 2640 99.4 Minus
Aps-RA 2565 CG6391-RA 677..1211 550..16 2630 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10896130..10896411 16..297 1365 98.9 Plus
3L 28110227 3L 10896469..10896626 296..453 790 100 Plus
3L 28110227 3L 10896777..10896877 450..550 505 100 Plus
Blast to na_te.dros performed on 2015-02-04 21:19:43 has no hits.

BS15128.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:42 Download gff for BS15128.3prime
Subject Subject Range Query Range Percent Splice Strand
Aps-PA 1..534 17..550 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:51:14 Download gff for BS15128.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6391-PC 1..534 17..550 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:42:02 Download gff for BS15128.3prime
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 1145..1681 16..552 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:40 Download gff for BS15128.3prime
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 1145..1681 16..552 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:40 Download gff for BS15128.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10896130..10896409 16..295 98 <- Plus
3L 10896469..10896624 296..451 100 <- Plus
3L 10896779..10896882 452..555 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:42:02 Download gff for BS15128.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10889230..10889509 16..295 98 <- Plus
arm_3L 10889569..10889724 296..451 100 <- Plus
arm_3L 10889879..10889982 452..555 98   Plus

BS15128.5prime Sequence

564 bp (564 high quality bases) assembled on 2006-10-23

> BS15128.5prime
GAAGTTATCAGTCGACATGGTCAAGGAGAAGCCCAACTCGACTCGCATCT
ACGACAAGGATGGATTTAGGCGCCGGGCTGCTTGTATTTGCGTGAAATCG
GAGAATGAGGCGGAGGTACTCTTGGTAACCTCATCTCGTCGCCCGGAGTT
GTGGATCGTTCCAGGAGGCGGCGTTGAACCAGAAGAGGAGTCATCGGTGA
CAGCCGTGCGCGAAGTGCTCGAAGAAGCCGGCGTGGTTGGCGATCTGGGT
CGTTGTCTCGGTGTATTCGAGAACAATGACCACATGCATCGCACCGAGGT
GTTCGTGATGAACGTGACTCAGGAACTGGACGAGTGGGAGGATTCGCGGA
GCATCGGTCGCAAGCGCCAGTGGTTCACCATCGATGATGCACTCTCGCAG
CTGGCGCTGCATAAGCCGACGCAGCAACACTATCTGATGCAGCTGCAGCA
CTCGAAGACGCTGGACAACACGAATCGCGTGGTGAACGCCACGCATCCGC
CCAAGTTGACCAATGCCGCCACCCCAGCCGCATCTCCCACTACGGCATAA
AAGCTTTCTAGACC

BS15128.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6391-PA 534 Aps-RA 1..534 17..550 2670 100 Plus
CG6391-PB 534 Aps-RB 1..534 17..550 2670 100 Plus
CG6391-PC 534 Aps-RC 1..534 17..550 2670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Aps-RC 2744 CG6391-RC 854..1390 15..551 2685 100 Plus
Aps-RB 2364 CG6391-RB 1145..1681 15..551 2685 100 Plus
Aps-RA 2565 CG6391-RA 677..1211 17..551 2675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10896130..10896411 551..270 1410 100 Minus
3L 28110227 3L 10896469..10896626 271..114 790 100 Minus
3L 28110227 3L 10896777..10896877 117..17 505 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:27:49 has no hits.

BS15128.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:43 Download gff for BS15128.5prime
Subject Subject Range Query Range Percent Splice Strand
Aps-PA 1..534 17..550 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:51:15 Download gff for BS15128.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6391-PC 1..534 17..550 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:18 Download gff for BS15128.5prime
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 1145..1681 15..551 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:57:58 Download gff for BS15128.5prime
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 1145..1681 15..551 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:57:58 Download gff for BS15128.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10896130..10896409 272..551 100 <- Minus
3L 10896469..10896624 116..271 100 <- Minus
3L 10896779..10896882 12..115 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:18 Download gff for BS15128.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10889230..10889509 272..551 100 <- Minus
arm_3L 10889569..10889724 116..271 100 <- Minus
arm_3L 10889879..10889982 12..115 98   Minus

BS15128.complete Sequence

566 bp assembled on 2006-11-01

GenBank Submission: FJ637877

> BS15128.complete
GAAGTTATCAGTCGACATGGTCAAGGAGAAGCCCAACTCGACTCGCATCT
ACGACAAGGATGGATTTAGGCGCCGGGCTGCTTGTATTTGCGTGAAATCG
GAGAATGAGGCGGAGGTACTCTTGGTAACCTCATCTCGTCGCCCGGAGTT
GTGGATCGTTCCAGGAGGCGGCGTTGAACCAGAAGAGGAGTCATCGGTGA
CAGCCGTGCGCGAAGTGCTCGAAGAAGCCGGCGTGGTTGGCGATCTGGGT
CGTTGTCTCGGTGTATTCGAGAACAATGACCACATGCATCGCACCGAGGT
GTTCGTGATGAACGTGACTCAGGAACTGGACGAGTGGGAGGATTCGCGGA
GCATCGGTCGCAAGCGCCAGTGGTTCACCATCGATGATGCACTCTCGCAG
CTGGCGCTGCATAAGCCGACGCAGCAACACTATCTGATGCAGCTGCAGCA
CTCGAAGACGCTGGACAACACGAATCGCGTGGTGAACGCCACGCATCCGC
CCAAGTTGACCAATGCCGCCACCCCAGCCGCATCTCCCACTACGGCATAA
AAGCTTTCTAGACCAT

BS15128.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Aps-RC 534 CG6391-PC 1..534 17..550 2670 100 Plus
Aps-RB 534 CG6391-PB 1..534 17..550 2670 100 Plus
Aps-RA 534 CG6391-PA 1..534 17..550 2670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Aps-RC 2744 CG6391-RC 854..1390 15..551 2685 100 Plus
Aps-RB 2364 CG6391-RB 1145..1681 15..551 2685 100 Plus
Aps-RA 2565 CG6391-RA 677..1211 17..551 2675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10896130..10896411 551..270 1410 100 Minus
3L 28110227 3L 10896469..10896626 271..114 790 100 Minus
3L 28110227 3L 10896777..10896877 117..17 505 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:10:20 has no hits.

BS15128.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:41 Download gff for BS15128.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RC 1..534 17..550 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:21 Download gff for BS15128.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 1169..1705 15..551 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:02:59 Download gff for BS15128.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 1147..1678 17..548 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:41 Download gff for BS15128.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RC 878..1414 15..551 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:27 Download gff for BS15128.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 1147..1678 17..548 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:27 Download gff for BS15128.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10896133..10896409 272..548 100 <- Minus
3L 10896469..10896624 116..271 100 <- Minus
3L 10896779..10896877 17..115 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:02:59 Download gff for BS15128.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10889569..10889724 116..271 100 <- Minus
arm_3L 10889879..10889977 17..115 100   Minus
arm_3L 10889233..10889509 272..548 100 <- Minus

BS15128.pep Sequence

Translation from 16 to 549

> BS15128.pep
MVKEKPNSTRIYDKDGFRRRAACICVKSENEAEVLLVTSSRRPELWIVPG
GGVEPEEESSVTAVREVLEEAGVVGDLGRCLGVFENNDHMHRTEVFVMNV
TQELDEWEDSRSIGRKRQWFTIDDALSQLALHKPTQQHYLMQLQHSKTLD
NTNRVVNATHPPKLTNAATPAASPTTA*

BS15128.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
Aps-PC 177 CG6391-PC 1..177 1..177 926 100 Plus
Aps-PB 177 CG6391-PB 1..177 1..177 926 100 Plus
Aps-PA 177 CG6391-PA 1..177 1..177 926 100 Plus