Clone Sequence Records
BS15128.3prime Sequence
564 bp (564 high quality bases) assembled on 2006-10-24
> BS15128.3prime
ATGGTCTAGAAAGCTTTTACGTCGTAGTGGGAGATGCGGCTGGGGTGGCG
GCATTGGTCAACTTGGGCGGATGCGTGGCGTTCACCACGCGATTCTTGTT
GTCCAGCGTCTTCGAGTGCTGCAGCTGCATCAGATAGTGTTGCTGCGTCG
GCTTATGCAGCGCCAGCTGCGAGAGTGCATCATCGATGGTGAACCACTGG
CGCTTGCGACCGATGCTCCGCGAATCCTCCCACTCGTCCAGTTCCTGAGT
CACGTTCATCACGAACACCTCGGTGCGATGCATGTGGTCATTGTTCTCGA
ATACACCGAGACAACGACCCAGATCGCCAACCACGCCGGCTTCTTCGAGC
ACTTCGCGCACGGCTGTCACCGATGACTCCTCTTCTGGTTCAACGCCGCC
TCCTGGAACGATCCACAACTCCGGGCGACGAGATGAGGTTACCAAGAGTA
CCTCCGCCTCATTCTCCGATTTCACGCAAATACAAGCAGCCCGGCGCCTA
AATCCATCCTTGTCGTAGATGCGAGTCGAGTTGGGCTTCTCCTTGACCAT
GTCGACTGATAACT
BS15128.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6391-PA | 534 | Aps-RA | 1..528 | 550..23 | 2615 | 99.8 | Minus |
CG6391-PB | 534 | Aps-RB | 1..528 | 550..23 | 2615 | 99.8 | Minus |
CG6391-PC | 534 | Aps-RC | 1..528 | 550..23 | 2615 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:19:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aps-RC | 2744 | CG6391-RC | 854..1390 | 552..16 | 2640 | 99.4 | Minus |
Aps-RB | 2364 | CG6391-RB | 1145..1681 | 552..16 | 2640 | 99.4 | Minus |
Aps-RA | 2565 | CG6391-RA | 677..1211 | 550..16 | 2630 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10896130..10896411 | 16..297 | 1365 | 98.9 | Plus |
3L | 28110227 | 3L | 10896469..10896626 | 296..453 | 790 | 100 | Plus |
3L | 28110227 | 3L | 10896777..10896877 | 450..550 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:19:43 has no hits.
BS15128.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:42 Download gff for
BS15128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-PA | 1..534 | 17..550 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:51:14 Download gff for
BS15128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6391-PC | 1..534 | 17..550 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:42:02 Download gff for
BS15128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RB | 1145..1681 | 16..552 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:40 Download gff for
BS15128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RB | 1145..1681 | 16..552 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:40 Download gff for
BS15128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10896130..10896409 | 16..295 | 98 | <- | Plus |
3L | 10896469..10896624 | 296..451 | 100 | <- | Plus |
3L | 10896779..10896882 | 452..555 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:42:02 Download gff for
BS15128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10889230..10889509 | 16..295 | 98 | <- | Plus |
arm_3L | 10889569..10889724 | 296..451 | 100 | <- | Plus |
arm_3L | 10889879..10889982 | 452..555 | 98 | | Plus |
BS15128.5prime Sequence
564 bp (564 high quality bases) assembled on 2006-10-23
> BS15128.5prime
GAAGTTATCAGTCGACATGGTCAAGGAGAAGCCCAACTCGACTCGCATCT
ACGACAAGGATGGATTTAGGCGCCGGGCTGCTTGTATTTGCGTGAAATCG
GAGAATGAGGCGGAGGTACTCTTGGTAACCTCATCTCGTCGCCCGGAGTT
GTGGATCGTTCCAGGAGGCGGCGTTGAACCAGAAGAGGAGTCATCGGTGA
CAGCCGTGCGCGAAGTGCTCGAAGAAGCCGGCGTGGTTGGCGATCTGGGT
CGTTGTCTCGGTGTATTCGAGAACAATGACCACATGCATCGCACCGAGGT
GTTCGTGATGAACGTGACTCAGGAACTGGACGAGTGGGAGGATTCGCGGA
GCATCGGTCGCAAGCGCCAGTGGTTCACCATCGATGATGCACTCTCGCAG
CTGGCGCTGCATAAGCCGACGCAGCAACACTATCTGATGCAGCTGCAGCA
CTCGAAGACGCTGGACAACACGAATCGCGTGGTGAACGCCACGCATCCGC
CCAAGTTGACCAATGCCGCCACCCCAGCCGCATCTCCCACTACGGCATAA
AAGCTTTCTAGACC
BS15128.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6391-PA | 534 | Aps-RA | 1..534 | 17..550 | 2670 | 100 | Plus |
CG6391-PB | 534 | Aps-RB | 1..534 | 17..550 | 2670 | 100 | Plus |
CG6391-PC | 534 | Aps-RC | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aps-RC | 2744 | CG6391-RC | 854..1390 | 15..551 | 2685 | 100 | Plus |
Aps-RB | 2364 | CG6391-RB | 1145..1681 | 15..551 | 2685 | 100 | Plus |
Aps-RA | 2565 | CG6391-RA | 677..1211 | 17..551 | 2675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10896130..10896411 | 551..270 | 1410 | 100 | Minus |
3L | 28110227 | 3L | 10896469..10896626 | 271..114 | 790 | 100 | Minus |
3L | 28110227 | 3L | 10896777..10896877 | 117..17 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:27:49 has no hits.
BS15128.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:43 Download gff for
BS15128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-PA | 1..534 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:51:15 Download gff for
BS15128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6391-PC | 1..534 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:18 Download gff for
BS15128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RB | 1145..1681 | 15..551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:57:58 Download gff for
BS15128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RB | 1145..1681 | 15..551 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:57:58 Download gff for
BS15128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10896130..10896409 | 272..551 | 100 | <- | Minus |
3L | 10896469..10896624 | 116..271 | 100 | <- | Minus |
3L | 10896779..10896882 | 12..115 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:18 Download gff for
BS15128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10889230..10889509 | 272..551 | 100 | <- | Minus |
arm_3L | 10889569..10889724 | 116..271 | 100 | <- | Minus |
arm_3L | 10889879..10889982 | 12..115 | 98 | | Minus |
BS15128.complete Sequence
566 bp assembled on 2006-11-01
GenBank Submission: FJ637877
> BS15128.complete
GAAGTTATCAGTCGACATGGTCAAGGAGAAGCCCAACTCGACTCGCATCT
ACGACAAGGATGGATTTAGGCGCCGGGCTGCTTGTATTTGCGTGAAATCG
GAGAATGAGGCGGAGGTACTCTTGGTAACCTCATCTCGTCGCCCGGAGTT
GTGGATCGTTCCAGGAGGCGGCGTTGAACCAGAAGAGGAGTCATCGGTGA
CAGCCGTGCGCGAAGTGCTCGAAGAAGCCGGCGTGGTTGGCGATCTGGGT
CGTTGTCTCGGTGTATTCGAGAACAATGACCACATGCATCGCACCGAGGT
GTTCGTGATGAACGTGACTCAGGAACTGGACGAGTGGGAGGATTCGCGGA
GCATCGGTCGCAAGCGCCAGTGGTTCACCATCGATGATGCACTCTCGCAG
CTGGCGCTGCATAAGCCGACGCAGCAACACTATCTGATGCAGCTGCAGCA
CTCGAAGACGCTGGACAACACGAATCGCGTGGTGAACGCCACGCATCCGC
CCAAGTTGACCAATGCCGCCACCCCAGCCGCATCTCCCACTACGGCATAA
AAGCTTTCTAGACCAT
BS15128.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aps-RC | 534 | CG6391-PC | 1..534 | 17..550 | 2670 | 100 | Plus |
Aps-RB | 534 | CG6391-PB | 1..534 | 17..550 | 2670 | 100 | Plus |
Aps-RA | 534 | CG6391-PA | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aps-RC | 2744 | CG6391-RC | 854..1390 | 15..551 | 2685 | 100 | Plus |
Aps-RB | 2364 | CG6391-RB | 1145..1681 | 15..551 | 2685 | 100 | Plus |
Aps-RA | 2565 | CG6391-RA | 677..1211 | 17..551 | 2675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:10:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10896130..10896411 | 551..270 | 1410 | 100 | Minus |
3L | 28110227 | 3L | 10896469..10896626 | 271..114 | 790 | 100 | Minus |
3L | 28110227 | 3L | 10896777..10896877 | 117..17 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:10:20 has no hits.
BS15128.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:41 Download gff for
BS15128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RC | 1..534 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:21 Download gff for
BS15128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RB | 1169..1705 | 15..551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:02:59 Download gff for
BS15128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RB | 1147..1678 | 17..548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:41 Download gff for
BS15128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RC | 878..1414 | 15..551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:27 Download gff for
BS15128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RB | 1147..1678 | 17..548 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:27 Download gff for
BS15128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10896133..10896409 | 272..548 | 100 | <- | Minus |
3L | 10896469..10896624 | 116..271 | 100 | <- | Minus |
3L | 10896779..10896877 | 17..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:02:59 Download gff for
BS15128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10889569..10889724 | 116..271 | 100 | <- | Minus |
arm_3L | 10889879..10889977 | 17..115 | 100 | | Minus |
arm_3L | 10889233..10889509 | 272..548 | 100 | <- | Minus |
BS15128.pep Sequence
Translation from 16 to 549
> BS15128.pep
MVKEKPNSTRIYDKDGFRRRAACICVKSENEAEVLLVTSSRRPELWIVPG
GGVEPEEESSVTAVREVLEEAGVVGDLGRCLGVFENNDHMHRTEVFVMNV
TQELDEWEDSRSIGRKRQWFTIDDALSQLALHKPTQQHYLMQLQHSKTLD
NTNRVVNATHPPKLTNAATPAASPTTA*
BS15128.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aps-PC | 177 | CG6391-PC | 1..177 | 1..177 | 926 | 100 | Plus |
Aps-PB | 177 | CG6391-PB | 1..177 | 1..177 | 926 | 100 | Plus |
Aps-PA | 177 | CG6391-PA | 1..177 | 1..177 | 926 | 100 | Plus |