Clone Sequence Records
BS15133.3prime Sequence
375 bp (375 high quality bases) assembled on 2006-10-23
> BS15133.3prime
ATGGTCTAGAAAGCTTTTAGCTGTGCTTGTCGCAATTGTATTTCCGCTCG
CAGCAAGCGGGAAATTCGCGATTGATGTTCACAAAGTCGCGCTGCTTGCA
GCCCGGTGGCGGAGCGACTGCATCGCAGGTTTTGAAGGTCACCAAGCCAT
CCGCATGGCATTCGGCCCGCACGCATGGCAGATCCGGCGCCAGACCCGTC
TCCCCGGGCGACAGGATCGTGTTCGTGTCCAGCACACACTTGCCGGGATG
CGATGAATTGTTCAGTTTGACCTTGGCAACGGCCGCCTGGCCAACGTGGC
CGCCAAGGATGACGACCAGGCCGAGGAGTAGGAATGCGGCAACGGTGCTA
AACTGCGACATGTCGACTGATAACT
BS15133.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2444-PA | 345 | CG2444-RA | 1..340 | 361..22 | 1700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:03:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2444-RB | 913 | CG2444-RB | 373..717 | 361..17 | 1710 | 99.7 | Minus |
| CG2444-RA | 638 | CG2444-RA | 98..442 | 361..17 | 1710 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11704506..11704741 | 17..252 | 1165 | 99.6 | Plus |
| X | 23542271 | X | 11704820..11704928 | 253..361 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:03:21 has no hits.
BS15133.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:52 Download gff for
BS15133.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2444-PA | 1..345 | 17..361 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:51:28 Download gff for
BS15133.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2444-PA | 1..345 | 17..361 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:12 Download gff for
BS15133.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2444-RA | 94..448 | 11..369 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:40 Download gff for
BS15133.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2444-RA | 94..448 | 11..369 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:40 Download gff for
BS15133.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11704510..11704741 | 21..252 | 99 | <- | Plus |
| X | 11704820..11704932 | 253..369 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:12 Download gff for
BS15133.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11598543..11598774 | 21..252 | 99 | <- | Plus |
| arm_X | 11598853..11598965 | 253..369 | 96 | | Plus |
BS15133.5prime Sequence
375 bp (375 high quality bases) assembled on 2006-10-23
> BS15133.5prime
GAAGTTATCAGTCGACATGTCGCAGTTTAGCACCGTTGCCGCATTCCTAC
TCCTCGGCCTGGTCGTCATCCTTGGCGGCCACGTTGGCCAGGCGGCCGTT
GCCAAGGTCAAACTGAACAATTCATCGCATCCCGGCAAGTGTGTGCTGGA
CACGAACACGATCCTGTCGCCCGGGGAGACGGGTCTGGCGCCGGATCTGC
CATGCGTGCGGGCCGAATGCCATGCGGATGGCTTGGTGACCTTCAAAACC
TGCGATGCAGTCGCTCCGCCACCGGGCTGCAAGCAGCGCGACTTTGTGAA
CATCAATCGCGAATTTCCCGCTTGCTGCGAGCGGAAATACAATTGCGACA
AGCACATCTAAAAGCTTTCTAGACC
BS15133.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2444-PA | 345 | CG2444-RA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:19:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2444-RB | 913 | CG2444-RB | 373..717 | 17..361 | 1725 | 100 | Plus |
| CG2444-RA | 638 | CG2444-RA | 98..442 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11704506..11704741 | 361..126 | 1180 | 100 | Minus |
| X | 23542271 | X | 11704820..11704928 | 125..17 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:19:44 has no hits.
BS15133.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:17:53 Download gff for
BS15133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2444-PA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:51:30 Download gff for
BS15133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2444-PA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:53:51 Download gff for
BS15133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2444-RA | 94..451 | 9..372 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:14 Download gff for
BS15133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2444-RA | 94..451 | 9..372 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:14 Download gff for
BS15133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11704497..11704741 | 126..372 | 97 | <- | Minus |
| X | 11704820..11704932 | 9..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:53:51 Download gff for
BS15133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11598530..11598774 | 126..372 | 97 | <- | Minus |
| arm_X | 11598853..11598965 | 9..125 | 96 | | Minus |
BS15133.complete Sequence
377 bp assembled on 2006-11-01
GenBank Submission: FJ637878
> BS15133.complete
GAAGTTATCAGTCGACATGTCGCAGTTTAGCACCGTTGCCGCATTCCTAC
TCCTCGGCCTGGTCGTCATCCTTGGCGGCCACGTTGGCCAGGCGGCCGTT
GCCAAGGTCAAACTGAACAATTCATCGCATCCCGGCAAGTGTGTGCTGGA
CACGAACACGATCCTGTCGCCCGGGGAGACGGGTCTGGCGCCGGATCTGC
CATGCGTGCGGGCCGAATGCCATGCGGATGGCTTGGTGACCTTCAAAACC
TGCGATGCAGTCGCTCCGCCACCGGGCTGCAAGCAGCGCGACTTTGTGAA
CATCAATCGCGAATTTCCCGCTTGCTGCGAGCGGAAATACAATTGCGACA
AGCACATCTAAAAGCTTTCTAGACCAT
BS15133.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2444-RB | 345 | CG2444-PB | 1..345 | 17..361 | 1725 | 100 | Plus |
| CG2444-RA | 345 | CG2444-PA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2444-RB | 913 | CG2444-RB | 373..717 | 17..361 | 1725 | 100 | Plus |
| CG2444-RA | 638 | CG2444-RA | 98..442 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11704506..11704741 | 361..126 | 1180 | 100 | Minus |
| X | 23542271 | X | 11704820..11704928 | 125..17 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:50:06 has no hits.
BS15133.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:42 Download gff for
BS15133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2444-RA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:22 Download gff for
BS15133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2444-RA | 80..437 | 9..372 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:31 Download gff for
BS15133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2444-RA | 98..440 | 17..359 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:42 Download gff for
BS15133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2444-RA | 80..437 | 9..372 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:23 Download gff for
BS15133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2444-RA | 98..440 | 17..359 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:23 Download gff for
BS15133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11704508..11704741 | 126..359 | 100 | <- | Minus |
| X | 11704820..11704928 | 17..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:31 Download gff for
BS15133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11598541..11598774 | 126..359 | 100 | <- | Minus |
| arm_X | 11598853..11598961 | 17..125 | 100 | | Minus |
BS15133.pep Sequence
Translation from 16 to 360
> BS15133.pep
MSQFSTVAAFLLLGLVVILGGHVGQAAVAKVKLNNSSHPGKCVLDTNTIL
SPGETGLAPDLPCVRAECHADGLVTFKTCDAVAPPPGCKQRDFVNINREF
PACCERKYNCDKHI*
BS15133.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2444-PB | 114 | CG2444-PB | 1..114 | 1..114 | 616 | 100 | Plus |
| CG2444-PA | 114 | CG2444-PA | 1..114 | 1..114 | 616 | 100 | Plus |
| CG34178-PC | 112 | CG34178-PC | 8..112 | 10..111 | 146 | 32.4 | Plus |
| CG34178-PB | 112 | CG34178-PB | 8..112 | 10..111 | 146 | 32.4 | Plus |
| CG34178-PA | 112 | CG34178-PA | 8..112 | 10..111 | 146 | 32.4 | Plus |
