Clone Sequence Records
BS15142.5prime Sequence
522 bp (522 high quality bases) assembled on 2006-10-23
> BS15142.5prime
GAAGTTATCAGTCGACATGTTCAATATTAAATTGCTGCTTTTGTTATTGG
CCGTTTCGTGGTTCCACCATGGACAAGCCGTCCAGGAGACGAAAATCGAA
GAAAAACCAGTATCAGAGCCTGAAATTGAATCCGAAATAAAGAACTCTAC
GAGCGTCCCAAGTAAATGCAATATTTACTATAGGAACTACCAATGGGCTC
TTCAGGATTGTGTCTGCCGTTGTTTCCAAAACGAATGCCTTATGCAAATC
GAGAGCGACCAGCGCAAAAAGGAGGGTAGATCCCCATTTGTGCCCGTTAC
GGAGGAACTCTGCCGTTCCTTCATCTGCAAAAAGTGCAGCGTGGGTTTCC
CCGTGGTTGCTGAATTCCCCATTCCGGCTCCCTGTGGATGCAATCGAAAG
CCAGGATCGATTGCCACAGAGAGATTCTACAGTTTGTGCCACCTGCTGAA
ATTCTCAGCGGAGAACAGCAAACCATTCCTGACTTATTCCTATTGTTGGC
CCTTCTAAAAGCTTTCTAGACC
BS15142.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7596-PA | 492 | Sgs5-RA | 1..492 | 17..508 | 2460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgs5-RA | 636 | CG7596-RA | 27..522 | 13..508 | 2480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17595388..17595659 | 13..284 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 17595716..17595904 | 285..473 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:50:51 has no hits.
BS15142.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:09 Download gff for
BS15142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-PA | 1..492 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:51:49 Download gff for
BS15142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7596-PA | 1..492 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:34 Download gff for
BS15142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 22..522 | 5..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:50 Download gff for
BS15142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 22..522 | 5..508 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:50 Download gff for
BS15142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17595383..17595659 | 5..284 | 98 | -> | Plus |
3R | 17595716..17595904 | 285..473 | 100 | -> | Plus |
3R | 17595964..17595998 | 474..508 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:34 Download gff for
BS15142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13421105..13421381 | 5..284 | 98 | -> | Plus |
arm_3R | 13421438..13421626 | 285..473 | 100 | -> | Plus |
arm_3R | 13421686..13421720 | 474..508 | 100 | | Plus |
BS15142.3prime Sequence
522 bp (522 high quality bases) assembled on 2006-10-24
> BS15142.3prime
ATGGTCTAGAAAGCTTTTACAAGGGCCAACAATAGGAATAAGTCAGGAAT
GGTTTGCTGTTCTCCGCTGAGAATTTCAGCAGGTGGCACAAACTGCAGAA
TCTCTCTGTGGCAATCGATCCTGGCTTTCGATTGCATCCACAGGGAGCCG
GAATGGGGAATTCAGCAACCACGGGGAAACCCACGCTGCACTTTTTGCAG
ATGAAGGAACGGCAGAGTTCCTCCGTAACGGGCACAAATGGGGATCTACC
CTCCTTTTTGCGCTGGTCGCTCTCGATTTGCATAAGGCATTCGTTTTGGA
AACAACGGCAGACACAATCCTGAAGAGCCCATTGGTAGTTCCTATAGTAA
ATATTGCATTTACTTGGGACGCTCGTAGAGTTCTTTATTTCGGATTCAAT
TTCAGGCTCTGATACTGGTTTTTCTTCGATTTTCGTCTCCTGGACGGCTT
GTCCATGGTGGAACCACGAAACGGCCAATAACAAAAGCAGCAATTTAATA
TTGAACATGTCGACTGATAACT
BS15142.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7596-PA | 492 | Sgs5-RA | 1..488 | 508..21 | 2415 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgs5-RA | 636 | CG7596-RA | 27..522 | 512..17 | 2450 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17595388..17595659 | 512..241 | 1360 | 100 | Minus |
3R | 32079331 | 3R | 17595716..17595904 | 240..52 | 930 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:38:52 has no hits.
BS15142.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:07 Download gff for
BS15142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-PA | 1..492 | 17..508 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:51:48 Download gff for
BS15142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7596-PA | 1..492 | 17..508 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:13 Download gff for
BS15142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 22..522 | 17..520 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:51 Download gff for
BS15142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 22..522 | 17..520 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:51 Download gff for
BS15142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17595383..17595659 | 241..520 | 98 | -> | Minus |
3R | 17595716..17595904 | 52..240 | 99 | -> | Minus |
3R | 17595964..17595998 | 17..51 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:13 Download gff for
BS15142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13421105..13421381 | 241..520 | 98 | -> | Minus |
arm_3R | 13421438..13421626 | 52..240 | 99 | -> | Minus |
arm_3R | 13421686..13421720 | 17..51 | 97 | | Minus |
BS15142.complete Sequence
524 bp assembled on 2006-11-01
GenBank Submission: FJ637879
> BS15142.complete
GAAGTTATCAGTCGACATGTTCAATATTAAATTGCTGCTTTTGTTATTGG
CCGTTTCGTGGTTCCACCATGGACAAGCCGTCCAGGAGACGAAAATCGAA
GAAAAACCAGTATCAGAGCCTGAAATTGAATCCGAAATAAAGAACTCTAC
GAGCGTCCCAAGTAAATGCAATATTTACTATAGGAACTACCAATGGGCTC
TTCAGGATTGTGTCTGCCGTTGTTTCCAAAACGAATGCCTTATGCAAATC
GAGAGCGACCAGCGCAAAAAGGAGGGTAGATCCCCATTTGTGCCCGTTAC
GGAGGAACTCTGCCGTTCCTTCATCTGCAAAAAGTGCAGCGTGGGTTTCC
CCGTGGTTGCTGAATTCCCCATTCCGGCTCCCTGTGGATGCAATCGAAAG
CCAGGATCGATTGCCACAGAGAGATTCTACAGTTTGTGCCACCTGCTGAA
ATTCTCAGCGGAGAACAGCAAACCATTCCTGACTTATTCCTATTGTTGGC
CCTTCTAAAAGCTTTCTAGACCAT
BS15142.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgs5-RA | 492 | CG7596-PA | 1..492 | 17..508 | 2460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgs5-RA | 636 | CG7596-RA | 27..522 | 13..508 | 2480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17595388..17595659 | 13..284 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 17595716..17595904 | 285..473 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:38:20 has no hits.
BS15142.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:27 Download gff for
BS15142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 1..492 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:13 Download gff for
BS15142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 1..494 | 15..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:24:22 Download gff for
BS15142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 36..520 | 22..506 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:27 Download gff for
BS15142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 1..494 | 15..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:03 Download gff for
BS15142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 36..520 | 22..506 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:03 Download gff for
BS15142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17595397..17595659 | 22..284 | 100 | -> | Plus |
3R | 17595716..17595904 | 285..473 | 100 | -> | Plus |
3R | 17595964..17595996 | 474..506 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:24:22 Download gff for
BS15142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13421119..13421381 | 22..284 | 100 | -> | Plus |
arm_3R | 13421438..13421626 | 285..473 | 100 | -> | Plus |
arm_3R | 13421686..13421718 | 474..506 | 100 | | Plus |
BS15142.pep Sequence
Translation from 16 to 507
> BS15142.pep
MFNIKLLLLLLAVSWFHHGQAVQETKIEEKPVSEPEIESEIKNSTSVPSK
CNIYYRNYQWALQDCVCRCFQNECLMQIESDQRKKEGRSPFVPVTEELCR
SFICKKCSVGFPVVAEFPIPAPCGCNRKPGSIATERFYSLCHLLKFSAEN
SKPFLTYSYCWPF*
BS15142.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgs5-PA | 163 | CG7596-PA | 1..163 | 1..163 | 897 | 100 | Plus |
CG7587-PA | 142 | CG7587-PA | 1..142 | 1..160 | 395 | 46.2 | Plus |