Clone BS15142 Report

Search the DGRC for BS15142

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:151
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptSgs5-RA
Protein status:BS15142.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15142.5prime Sequence

522 bp (522 high quality bases) assembled on 2006-10-23

> BS15142.5prime
GAAGTTATCAGTCGACATGTTCAATATTAAATTGCTGCTTTTGTTATTGG
CCGTTTCGTGGTTCCACCATGGACAAGCCGTCCAGGAGACGAAAATCGAA
GAAAAACCAGTATCAGAGCCTGAAATTGAATCCGAAATAAAGAACTCTAC
GAGCGTCCCAAGTAAATGCAATATTTACTATAGGAACTACCAATGGGCTC
TTCAGGATTGTGTCTGCCGTTGTTTCCAAAACGAATGCCTTATGCAAATC
GAGAGCGACCAGCGCAAAAAGGAGGGTAGATCCCCATTTGTGCCCGTTAC
GGAGGAACTCTGCCGTTCCTTCATCTGCAAAAAGTGCAGCGTGGGTTTCC
CCGTGGTTGCTGAATTCCCCATTCCGGCTCCCTGTGGATGCAATCGAAAG
CCAGGATCGATTGCCACAGAGAGATTCTACAGTTTGTGCCACCTGCTGAA
ATTCTCAGCGGAGAACAGCAAACCATTCCTGACTTATTCCTATTGTTGGC
CCTTCTAAAAGCTTTCTAGACC

BS15142.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7596-PA 492 Sgs5-RA 1..492 17..508 2460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Sgs5-RA 636 CG7596-RA 27..522 13..508 2480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17595388..17595659 13..284 1360 100 Plus
3R 32079331 3R 17595716..17595904 285..473 945 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:50:51 has no hits.

BS15142.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:09 Download gff for BS15142.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgs5-PA 1..492 17..508 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:51:49 Download gff for BS15142.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7596-PA 1..492 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:34 Download gff for BS15142.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 22..522 5..508 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:50 Download gff for BS15142.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 22..522 5..508 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:50 Download gff for BS15142.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17595383..17595659 5..284 98 -> Plus
3R 17595716..17595904 285..473 100 -> Plus
3R 17595964..17595998 474..508 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:34 Download gff for BS15142.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13421105..13421381 5..284 98 -> Plus
arm_3R 13421438..13421626 285..473 100 -> Plus
arm_3R 13421686..13421720 474..508 100   Plus

BS15142.3prime Sequence

522 bp (522 high quality bases) assembled on 2006-10-24

> BS15142.3prime
ATGGTCTAGAAAGCTTTTACAAGGGCCAACAATAGGAATAAGTCAGGAAT
GGTTTGCTGTTCTCCGCTGAGAATTTCAGCAGGTGGCACAAACTGCAGAA
TCTCTCTGTGGCAATCGATCCTGGCTTTCGATTGCATCCACAGGGAGCCG
GAATGGGGAATTCAGCAACCACGGGGAAACCCACGCTGCACTTTTTGCAG
ATGAAGGAACGGCAGAGTTCCTCCGTAACGGGCACAAATGGGGATCTACC
CTCCTTTTTGCGCTGGTCGCTCTCGATTTGCATAAGGCATTCGTTTTGGA
AACAACGGCAGACACAATCCTGAAGAGCCCATTGGTAGTTCCTATAGTAA
ATATTGCATTTACTTGGGACGCTCGTAGAGTTCTTTATTTCGGATTCAAT
TTCAGGCTCTGATACTGGTTTTTCTTCGATTTTCGTCTCCTGGACGGCTT
GTCCATGGTGGAACCACGAAACGGCCAATAACAAAAGCAGCAATTTAATA
TTGAACATGTCGACTGATAACT

BS15142.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7596-PA 492 Sgs5-RA 1..488 508..21 2415 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Sgs5-RA 636 CG7596-RA 27..522 512..17 2450 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17595388..17595659 512..241 1360 100 Minus
3R 32079331 3R 17595716..17595904 240..52 930 99.5 Minus
Blast to na_te.dros performed on 2015-02-11 04:38:52 has no hits.

BS15142.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:07 Download gff for BS15142.3prime
Subject Subject Range Query Range Percent Splice Strand
Sgs5-PA 1..492 17..508 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:51:48 Download gff for BS15142.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7596-PA 1..492 17..508 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:13 Download gff for BS15142.3prime
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 22..522 17..520 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:51 Download gff for BS15142.3prime
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 22..522 17..520 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:51 Download gff for BS15142.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17595383..17595659 241..520 98 -> Minus
3R 17595716..17595904 52..240 99 -> Minus
3R 17595964..17595998 17..51 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:13 Download gff for BS15142.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13421105..13421381 241..520 98 -> Minus
arm_3R 13421438..13421626 52..240 99 -> Minus
arm_3R 13421686..13421720 17..51 97   Minus

BS15142.complete Sequence

524 bp assembled on 2006-11-01

GenBank Submission: FJ637879

> BS15142.complete
GAAGTTATCAGTCGACATGTTCAATATTAAATTGCTGCTTTTGTTATTGG
CCGTTTCGTGGTTCCACCATGGACAAGCCGTCCAGGAGACGAAAATCGAA
GAAAAACCAGTATCAGAGCCTGAAATTGAATCCGAAATAAAGAACTCTAC
GAGCGTCCCAAGTAAATGCAATATTTACTATAGGAACTACCAATGGGCTC
TTCAGGATTGTGTCTGCCGTTGTTTCCAAAACGAATGCCTTATGCAAATC
GAGAGCGACCAGCGCAAAAAGGAGGGTAGATCCCCATTTGTGCCCGTTAC
GGAGGAACTCTGCCGTTCCTTCATCTGCAAAAAGTGCAGCGTGGGTTTCC
CCGTGGTTGCTGAATTCCCCATTCCGGCTCCCTGTGGATGCAATCGAAAG
CCAGGATCGATTGCCACAGAGAGATTCTACAGTTTGTGCCACCTGCTGAA
ATTCTCAGCGGAGAACAGCAAACCATTCCTGACTTATTCCTATTGTTGGC
CCTTCTAAAAGCTTTCTAGACCAT

BS15142.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
Sgs5-RA 492 CG7596-PA 1..492 17..508 2460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Sgs5-RA 636 CG7596-RA 27..522 13..508 2480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17595388..17595659 13..284 1360 100 Plus
3R 32079331 3R 17595716..17595904 285..473 945 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:38:20 has no hits.

BS15142.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:27 Download gff for BS15142.complete
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 1..492 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:13 Download gff for BS15142.complete
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 1..494 15..508 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:24:22 Download gff for BS15142.complete
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 36..520 22..506 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:27 Download gff for BS15142.complete
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 1..494 15..508 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:03 Download gff for BS15142.complete
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 36..520 22..506 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:03 Download gff for BS15142.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17595397..17595659 22..284 100 -> Plus
3R 17595716..17595904 285..473 100 -> Plus
3R 17595964..17595996 474..506 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:24:22 Download gff for BS15142.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13421119..13421381 22..284 100 -> Plus
arm_3R 13421438..13421626 285..473 100 -> Plus
arm_3R 13421686..13421718 474..506 100   Plus

BS15142.pep Sequence

Translation from 16 to 507

> BS15142.pep
MFNIKLLLLLLAVSWFHHGQAVQETKIEEKPVSEPEIESEIKNSTSVPSK
CNIYYRNYQWALQDCVCRCFQNECLMQIESDQRKKEGRSPFVPVTEELCR
SFICKKCSVGFPVVAEFPIPAPCGCNRKPGSIATERFYSLCHLLKFSAEN
SKPFLTYSYCWPF*

BS15142.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Sgs5-PA 163 CG7596-PA 1..163 1..163 897 100 Plus
CG7587-PA 142 CG7587-PA 1..142 1..160 395 46.2 Plus