Clone Sequence Records
BS15143.complete Sequence
821 bp assembled on 2010-02-09
GenBank Submission: KX806024
> BS15143.complete
GAAGTTATCAGTCGACATGAAGGTGCTAGCGGTCCTACTTTTGGGGGTGA
TTGCCTCCGCCACGGCGTTCGAGAAGCCGGTTTTCTGGAAGGATGTGCCC
GTGGGCAAGGCCTCGATCGAAGGTAGGATCACCATGGGATATCCTGCCTA
CGAAGGCAAGGTGCCCTACATTGTCGGTTTGGGCTTCAGCAAGAACGGTG
GAGGCACCTGGTGCGGCGGTTCCATTATCGGCAACACCTGGGTGATGACC
GCCAAGCATTGTACCGATGGCATGGAATCGGTGACCATCTACTACGGAGC
CCTCTGGCGCCTGCAGGCACAGTACACCCACTGGGTGGGACGTAGCGACT
TCATTGAGCACGGATCTGGAGACATCTCCCTCATTCGCACTCCCCACGTA
GACTTCTGGTCGCTGGTCAACAAGGTGGAGCTCCCCAGGTACGACGATCG
CTACAACAACTACCAAGGCTGGTGGGCTCTGGTCTCCGGATGGGGCAAGA
CCTCCGATGAGGGCGGTGTCTCCGAGTACCTGAACTGCGTCGATGTCCAG
ATTGGCGAAAACTCCGTGTGCGAGAACTACTACGGCAGCTTCTCCGGCGA
CCTAATCTGCATCCCCACTCCCGAGAACAAGGGCACCTGCAGCGGCGACT
CCGGTGGCCCACTGGTCATCCACGACGGCAACCGCCAGGTGGGCATTGTG
TCCTTCGGCTCCTCCGCCGGCTGCCTCTCCAACGGTCCCAAGGGTATGGT
GCGCGTCACCAGCTACCTGGACTGGATCCGCGACAACACTGGCATCTCTT
ATTAAAAGCTTTCTAGACCAT
BS15143.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Ai-RB | 789 | CG10475-PB | 1..789 | 17..805 | 3945 | 100 | Plus |
Jon65Ai-RA | 789 | CG10475-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
Jon65Aii-RA | 780 | CG6580-PA | 340..780 | 371..805 | 760 | 78.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Ai-RB | 951 | CG10475-RB | 26..818 | 15..807 | 3965 | 100 | Plus |
Jon65Ai-RA | 860 | CG10475-RA | 26..818 | 15..807 | 3965 | 100 | Plus |
Jon65Aii-RA | 833 | CG6580-RA | 369..809 | 371..805 | 760 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6053626..6054418 | 807..15 | 3965 | 100 | Minus |
3L | 28110227 | 3L | 6052751..6053191 | 371..805 | 760 | 78.7 | Plus |
3L | 28110227 | 3L | 8391807..8392021 | 281..495 | 385 | 78.6 | Plus |
2L | 23513712 | 2L | 4952785..4953004 | 331..112 | 350 | 77.3 | Minus |
2R | 25286936 | 2R | 8691844..8692188 | 371..709 | 340 | 73.9 | Plus |
3L | 28110227 | 3L | 8393171..8393378 | 495..288 | 290 | 76 | Minus |
3R | 32079331 | 3R | 30487393..30487531 | 509..371 | 290 | 80.6 | Minus |
3R | 32079331 | 3R | 30489360..30489498 | 371..509 | 290 | 80.6 | Plus |
3R | 32079331 | 3R | 29922608..29922746 | 371..509 | 275 | 79.9 | Plus |
3R | 32079331 | 3R | 29924083..29924221 | 509..371 | 275 | 79.9 | Minus |
3R | 32079331 | 3R | 29922868..29923039 | 634..805 | 260 | 76.7 | Plus |
3R | 32079331 | 3R | 29923790..29923961 | 805..634 | 260 | 76.7 | Minus |
3R | 32079331 | 3R | 30487094..30487271 | 811..634 | 245 | 75.8 | Minus |
2L | 23513712 | 2L | 4950300..4950403 | 477..374 | 235 | 81.7 | Minus |
2L | 23513712 | 2L | 4952555..4952724 | 540..371 | 235 | 75.9 | Minus |
2L | 23513712 | 2L | 4952284..4952337 | 805..752 | 225 | 94.4 | Minus |
2L | 23513712 | 2L | 4954670..4954757 | 458..371 | 215 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:22:31 has no hits.
BS15143.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:50 Download gff for
BS15143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:31 Download gff for
BS15143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 11..797 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:49 Download gff for
BS15143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 28..814 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:55 Download gff for
BS15143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 11..797 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:00 Download gff for
BS15143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 28..814 | 17..803 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:00 Download gff for
BS15143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6053630..6054416 | 17..803 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:49 Download gff for
BS15143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6046730..6047516 | 17..803 | 100 | | Minus |
BS15143.3prime Sequence
819 bp (749 high quality bases) assembled on 2006-10-23
> BS15143.3prime
ATGGTCTAGAAAGCTTTTACTTAGAGATGCCAGTGTTGTCGCGGATCCAG
TCCAGGTAGCTGGTGACGCGCACCATACCCTTGGGACCGTTGGACAGGCA
GCCGGCGGAGGAGCCGAAGGACACAATGCCCACCTGGCGGTTGCCGTCGT
GGATGACCAGTGGGCCACCGGAGTCGCCGCTGCAGGTGCCCTTGTTCTCG
GGAGTGGGGATGCAGATTAGGTCGCCGGAGAAGCTGCCGTAGTAGTTCTC
GCACACGGAGTTTTCGCCAATCTGGACATCGACGCAGTTCAGGTACTCGG
AGACACCGCCCTCATCGGAGGTCTTGCCCCATCCGGAGACCAGAGCCCAC
CAGCCTTGGTAGTTGTTGTAGCGATCGTCGTACCTGGGGAGCTCCACCTT
GTTGACCAGCGACCAGAAGTCTACGTGGGGAGTGCGAATGAGGGAGATGT
CTCCAGATCCGTGCTCAATGAAGTCGCTACGTCCCACCCAGTGGGTGTAC
TGTGCCTGCAGGCGCCAGAGGGCTCCGTAGTAGATGGTCACCGATTCCAT
GCCATCGGTACAATGCTTGGCGGTCATCACCCAGGTGTTGCCGATAATGG
AACCGCCGCACCAGGTGCCTCCACCGTTCTTGCTGAAGCCCAAACCGACA
ATGTAGGGCACCTTGCCTTCGTAGGCAGGATATCCCATGGTGATCCTACC
TTCGATCGAGGCCTTGCCCACGGGCACATCCTTCCAGAAAACCGGCTTCT
CGAACGCCGTGGCGGAGGCAATCACCCCCAAAAGTAGGACCGCTAGCACC
TTCATGTCGACTGATAACT
BS15143.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10475-PA | 789 | Jon65Ai-RA | 1..783 | 805..23 | 3890 | 99.8 | Minus |
CG6580-PA | 780 | Jon65Aii-RA | 355..465 | 436..326 | 305 | 90.9 | Minus |
CG6580-PA | 780 | Jon65Aii-RA | 590..708 | 207..89 | 270 | 89 | Minus |
CG8869-PA | 831 | Jon25Bii-RA | 778..824 | 70..24 | 210 | 97.8 | Minus |
CG31034-PA | 798 | Jon99Cii-RA | 745..791 | 70..24 | 160 | 93.6 | Minus |
CG31362-PA | 798 | Jon99Ciii-RA | 745..791 | 70..24 | 160 | 93.6 | Minus |
CG8869-PA | 831 | Jon25Bii-RA | 139..190 | 682..631 | 135 | 90.3 | Minus |
CG8579-PA | 816 | Jon44E-RA | 532..558 | 295..269 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Ai-RB | 951 | CG10475-RB | 26..818 | 807..15 | 3920 | 99.6 | Minus |
Jon65Ai-RA | 860 | CG10475-RA | 26..818 | 807..15 | 3920 | 99.6 | Minus |
Jon65Aii-RA | 833 | CG6580-RA | 369..803 | 451..23 | 790 | 79.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6053626..6054418 | 15..807 | 3920 | 99.6 | Plus |
3L | 28110227 | 3L | 6052751..6053185 | 451..23 | 760 | 78.9 | Minus |
3L | 28110227 | 3L | 8391807..8392021 | 541..327 | 385 | 78.6 | Minus |
2L | 23513712 | 2L | 4952785..4953004 | 491..710 | 350 | 77.3 | Plus |
2R | 25286936 | 2R | 8691844..8692188 | 451..113 | 340 | 73.9 | Minus |
3L | 28110227 | 3L | 8393171..8393378 | 327..534 | 290 | 76 | Plus |
2L | 23513712 | 2L | 4950300..4950403 | 345..448 | 235 | 81.7 | Plus |
2L | 23513712 | 2L | 4952555..4952724 | 282..451 | 235 | 75.9 | Plus |
2L | 23513712 | 2L | 4952291..4952337 | 24..70 | 220 | 97.9 | Plus |
2L | 23513712 | 2L | 4954670..4954757 | 364..451 | 215 | 83 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:16:40 has no hits.
BS15143.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:10 Download gff for
BS15143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10475-PA | 1..789 | 17..805 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:51:50 Download gff for
BS15143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10475-PA | 1..789 | 17..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:20:34 Download gff for
BS15143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 22..818 | 15..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:23 Download gff for
BS15143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 22..818 | 15..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:23 Download gff for
BS15143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6053632..6054422 | 22..812 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:20:34 Download gff for
BS15143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6046732..6047522 | 22..812 | 99 | | Plus |
BS15143.5prime Sequence
818 bp (774 high quality bases) assembled on 2006-10-23
> BS15143.5prime
GAAGTTATCAGTCGACATGAAGGTGCTAGCGGTCCTACTTTTGGGGGTGA
TTGCCTCCGCCACGGCGTTCGAGAAGCCGGTTTTCTGGAAGGATGTGCCC
GTGGGCAAGGCCTCGATCGAAGGTAGGATCACCATGGGATATCCTGCCTA
CGAAGGCAAGGTGCCCTACATTGTCGGTTTGGGCTTCAGCAAGAACGGTG
GAGGCACCTGGTGCGGCGGTTCCATTATCGGCAACACCTGGGTGATGACC
GCCAAGCATTGTACCGATGGCATGGAATCGGTGACCATCTACTACGGAGC
CCTCTGGCGCCTGCAGGCACAGTACACCCACTGGGTGGGACGTAGCGACT
TCATTGAGCACGGATCTGGAGACATCTCCCTCATTCGCACTCCCCACGTA
GACTTCTGGTCGCTGGTCAACAAGGTGGAGCTCCCCAGGTACGACGATCG
CTACAACAACTACCAAGGCTGGTGGGCTCTGGTCTCCGGATGGGGCAAGA
CCTCCGATGAGGGCGGTGTCTCCGAGTACCTGAACTGCGTCGATGTCCAG
ATTGGCGAAAACTCCGTGTGCGAGAACTACTACGGCAGCTTCTCCGGCGA
CCTAATCTGCATCCCCACTCCCGAGAACAAGGGCACCTGCAGCGGCGACT
CCGGTGGCCCACTGGTCATCCACGACGGCAACCGCCAGGTGGGCATTGTG
TCCTTCGGCTCCTCCGCCGGCTGCCTCTCCAACGGTCCCAAGGGTATGGT
GCGCGTCACCAGCTACCTGGACTGGATCCGCGACAACACTGGCATCTCTT
ATTAAAGCTTTCTAGACC
BS15143.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10475-PA | 789 | Jon65Ai-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
CG6580-PA | 780 | Jon65Aii-RA | 355..465 | 386..496 | 305 | 90.9 | Plus |
CG6580-PA | 780 | Jon65Aii-RA | 590..708 | 615..733 | 245 | 88.2 | Plus |
CG8869-PA | 831 | Jon25Bii-RA | 778..824 | 752..798 | 210 | 97.8 | Plus |
CG31034-PA | 798 | Jon99Cii-RA | 745..791 | 752..798 | 160 | 93.6 | Plus |
CG31362-PA | 798 | Jon99Ciii-RA | 745..791 | 752..798 | 160 | 93.6 | Plus |
CG8869-PA | 831 | Jon25Bii-RA | 139..190 | 140..191 | 135 | 90.3 | Plus |
CG8579-PA | 816 | Jon44E-RA | 532..558 | 527..553 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Ai-RB | 951 | CG10475-RB | 26..817 | 15..806 | 3960 | 100 | Plus |
Jon65Ai-RA | 860 | CG10475-RA | 26..817 | 15..806 | 3960 | 100 | Plus |
Jon65Aii-RA | 833 | CG6580-RA | 369..809 | 371..805 | 790 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6053627..6054418 | 806..15 | 3960 | 100 | Minus |
3L | 28110227 | 3L | 6052751..6053191 | 371..805 | 760 | 78.7 | Plus |
3L | 28110227 | 3L | 8391807..8392021 | 281..495 | 385 | 78.6 | Plus |
2L | 23513712 | 2L | 4952785..4953004 | 331..112 | 350 | 77.3 | Minus |
2R | 25286936 | 2R | 8691844..8692188 | 371..709 | 340 | 73.9 | Plus |
3L | 28110227 | 3L | 8393171..8393378 | 495..288 | 290 | 76 | Minus |
2L | 23513712 | 2L | 4950300..4950403 | 477..374 | 235 | 81.7 | Minus |
2L | 23513712 | 2L | 4952555..4952724 | 540..371 | 235 | 75.9 | Minus |
2L | 23513712 | 2L | 4952284..4952337 | 805..752 | 225 | 94.4 | Minus |
2L | 23513712 | 2L | 4954670..4954757 | 458..371 | 215 | 83 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:53:05 has no hits.
BS15143.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:11 Download gff for
BS15143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10475-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:51:52 Download gff for
BS15143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10475-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:29:48 Download gff for
BS15143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 22..817 | 10..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:27 Download gff for
BS15143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 22..817 | 10..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:27 Download gff for
BS15143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6053627..6054422 | 10..806 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:29:48 Download gff for
BS15143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6046727..6047522 | 10..806 | 99 | | Minus |
BS15143.pep Sequence
Translation from 16 to 804
> BS15143.pep
MKVLAVLLLGVIASATAFEKPVFWKDVPVGKASIEGRITMGYPAYEGKVP
YIVGLGFSKNGGGTWCGGSIIGNTWVMTAKHCTDGMESVTIYYGALWRLQ
AQYTHWVGRSDFIEHGSGDISLIRTPHVDFWSLVNKVELPRYDDRYNNYQ
GWWALVSGWGKTSDEGGVSEYLNCVDVQIGENSVCENYYGSFSGDLICIP
TPENKGTCSGDSGGPLVIHDGNRQVGIVSFGSSAGCLSNGPKGMVRVTSY
LDWIRDNTGISY*
BS15143.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Ai-PB | 262 | CG10475-PB | 1..262 | 1..262 | 1440 | 100 | Plus |
Jon65Ai-PA | 262 | CG10475-PA | 1..262 | 1..262 | 1440 | 100 | Plus |
Jon65Aii-PA | 259 | CG6580-PA | 1..259 | 1..262 | 951 | 67.4 | Plus |
Jon44E-PB | 271 | CG8579-PB | 10..271 | 4..262 | 864 | 63.1 | Plus |
Jon44E-PA | 271 | CG8579-PA | 10..271 | 4..262 | 864 | 63.1 | Plus |