Clone Sequence Records
BS15146.3prime Sequence
486 bp (486 high quality bases) assembled on 2006-10-24
> BS15146.3prime
ATGGTCTAGAAAGCTTTTAACATTTACAAAACCGTTTAGGACAATACTCA
CGACAGCAACAATTGATGCCGCATTTGTAATTCATGCCCTCGCATTTCTG
CTTGCCCCACGAAAATGAAAGAAGACGGGCATATCCAGCTGCCTGGCGAG
CTTCATTTTCCTTTATCAGTTCACAATCTGACTTGCATACGAAGTAGAAG
GCTACGCCTTTGCCACAATGTGAGTCCAGGATGCAACGATTCACGGGTTT
GCTGTCGCAGGGACCGGGATTTTGACAACTTGGACCATTGTAGACGCAAT
GGGCACCGCAGCAGGCGTTATCCCGAGGTGGAAGTTTGGGCTCCTTATAG
CCATTACCATTGCACTTGTTCAGGCCAATGAACGGATGGCAGGACCCCTG
GTTGCAGCCCGATATTACGGCCATTAGACAAGCCAGCAGTTGGAAAATCA
GCAGAACTCGTATTGCTCTCATGTCGACTGATAACT
BS15146.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31698-PA | 456 | CG31698-RA | 1..451 | 472..22 | 2255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31698-RB | 569 | CG31698-RB | 14..471 | 474..17 | 2275 | 99.8 | Minus |
| CG31698-RA | 491 | CG31698-RA | 14..471 | 474..17 | 2275 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:38:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3173478..3173827 | 125..474 | 1750 | 100 | Plus |
| 2L | 23513712 | 2L | 3173303..3173412 | 17..126 | 535 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:38:42 has no hits.
BS15146.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:16 Download gff for
BS15146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-PA | 1..456 | 17..472 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:51:59 Download gff for
BS15146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-PA | 1..456 | 17..472 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:11 Download gff for
BS15146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-RA | 1..464 | 9..473 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:30 Download gff for
BS15146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-RA | 5..478 | 9..483 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:30 Download gff for
BS15146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3173299..3173412 | 13..126 | 96 | <- | Plus |
| 2L | 3173480..3173836 | 127..483 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:11 Download gff for
BS15146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3173299..3173412 | 13..126 | 96 | <- | Plus |
| arm_2L | 3173480..3173836 | 127..483 | 98 | | Plus |
BS15146.5prime Sequence
486 bp (486 high quality bases) assembled on 2006-10-23
> BS15146.5prime
GAAGTTATCAGTCGACATGAGAGCAATACGAGTTCTGCTGATTTTCCAAC
TGCTGGCTTGTCTAATGGCCGTAATATCGGGCTGCAACCAGGGGTCCTGC
CATCCGTTCATTGGCCTGAACAAGTGCAATGGTAATGGCTATAAGGAGCC
CAAACTTCCACCTCGGGATAACGCCTGCTGCGGTGCCCATTGCGTCTACA
ATGGTCCAAGTTGTCAAAATCCCGGTCCCTGCGACAGCAAACCCGTGAAT
CGTTGCATCCTGGACTCACATTGTGGCAAAGGCGTAGCCTTCTACTTCGT
ATGCAAGTCAGATTGTGAACTGATAAAGGAAAATGAAGCTCGCCAGGCAG
CTGGATATGCCCGTCTTCTTTCATTTTCGTGGGGCAAGCAGAAATGCGAG
GGCATGAATTACAAATGCGGCATCAATTGTTGCTGTCGTGAGTATTGTCC
TAAACGGTTTTGTAAATTTTAAAAGCTTTCTAGACC
BS15146.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31698-PA | 456 | CG31698-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31698-RB | 569 | CG31698-RB | 14..471 | 15..472 | 2290 | 100 | Plus |
| CG31698-RA | 491 | CG31698-RA | 14..471 | 15..472 | 2290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3173478..3173827 | 364..15 | 1750 | 100 | Minus |
| 2L | 23513712 | 2L | 3173303..3173412 | 472..363 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:30:06 has no hits.
BS15146.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:17 Download gff for
BS15146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-PA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:52:01 Download gff for
BS15146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-PA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:29:21 Download gff for
BS15146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-RA | 1..464 | 16..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:34 Download gff for
BS15146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-RA | 5..478 | 6..480 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:34 Download gff for
BS15146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3173296..3173412 | 363..480 | 96 | <- | Minus |
| 2L | 3173480..3173836 | 6..362 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:29:21 Download gff for
BS15146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3173296..3173412 | 363..480 | 96 | <- | Minus |
| arm_2L | 3173480..3173836 | 6..362 | 98 | | Minus |
BS15146.complete Sequence
488 bp assembled on 2006-11-01
GenBank Submission: FJ637880
> BS15146.complete
GAAGTTATCAGTCGACATGAGAGCAATACGAGTTCTGCTGATTTTCCAAC
TGCTGGCTTGTCTAATGGCCGTAATATCGGGCTGCAACCAGGGGTCCTGC
CATCCGTTCATTGGCCTGAACAAGTGCAATGGTAATGGCTATAAGGAGCC
CAAACTTCCACCTCGGGATAACGCCTGCTGCGGTGCCCATTGCGTCTACA
ATGGTCCAAGTTGTCAAAATCCCGGTCCCTGCGACAGCAAACCCGTGAAT
CGTTGCATCCTGGACTCACATTGTGGCAAAGGCGTAGCCTTCTACTTCGT
ATGCAAGTCAGATTGTGAACTGATAAAGGAAAATGAAGCTCGCCAGGCAG
CTGGATATGCCCGTCTTCTTTCATTTTCGTGGGGCAAGCAGAAATGCGAG
GGCATGAATTACAAATGCGGCATCAATTGTTGCTGTCGTGAGTATTGTCC
TAAACGGTTTTGTAAATTTTAAAAGCTTTCTAGACCAT
BS15146.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31698-RB | 456 | CG31698-PB | 1..456 | 17..472 | 2280 | 100 | Plus |
| CG31698-RA | 456 | CG31698-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:11:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31698-RB | 569 | CG31698-RB | 14..471 | 15..472 | 2290 | 100 | Plus |
| CG31698-RA | 491 | CG31698-RA | 14..471 | 15..472 | 2290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3173478..3173827 | 364..15 | 1750 | 100 | Minus |
| 2L | 23513712 | 2L | 3173303..3173412 | 472..363 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:11:52 has no hits.
BS15146.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:28 Download gff for
BS15146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-RA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:13 Download gff for
BS15146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-RA | 2..455 | 17..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:10 Download gff for
BS15146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-RA | 2..455 | 17..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:28 Download gff for
BS15146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-RA | 1..464 | 16..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:03 Download gff for
BS15146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-RA | 16..469 | 17..470 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:03 Download gff for
BS15146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3173305..3173412 | 363..470 | 100 | <- | Minus |
| 2L | 3173480..3173825 | 17..362 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:10 Download gff for
BS15146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3173305..3173412 | 363..470 | 100 | <- | Minus |
| arm_2L | 3173480..3173825 | 17..362 | 100 | | Minus |
BS15146.pep Sequence
Translation from 16 to 471
> BS15146.pep
MRAIRVLLIFQLLACLMAVISGCNQGSCHPFIGLNKCNGNGYKEPKLPPR
DNACCGAHCVYNGPSCQNPGPCDSKPVNRCILDSHCGKGVAFYFVCKSDC
ELIKENEARQAAGYARLLSFSWGKQKCEGMNYKCGINCCCREYCPKRFCK
F*
BS15146.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31698-PB | 151 | CG31698-PB | 1..151 | 1..151 | 874 | 100 | Plus |
| CG31698-PA | 151 | CG31698-PA | 1..151 | 1..151 | 874 | 100 | Plus |
