Clone Sequence Records
BS15147.5prime Sequence
711 bp (711 high quality bases) assembled on 2006-10-23
> BS15147.5prime
GAAGTTATCAGTCGACATGTCGGCGGTGGCCTACGACTCACTGCTGTCAA
CGACGGCGGTGATCAGCACCGTCTTCCAGTTCCTCTCCGGCGCCATGATA
TGCCGAAAGTACATCCAGAAGAAAAGCACGGGGGACTCTTCCGGAGTTCC
CTTCATATGCGGATTCTTATCGTGCAGCTTTTGGTTGCGCTACGGTGTCT
TAACCAACGAGCAGAGCATTGTGCTGGTCAACATCATCGGATCGACGCTC
TTTCTGGTCTACACGCTGATCTACTATGTGTTTACCGTCAACAAACGTGC
CTGTGTAAAGCAGTTTGGGTTTGTTCTGACTGTTCTGGTGGTGGTCATTG
TCTACACCAATCGGCTGGAAGATCAGCGCGATCGAATGATACACGTCACA
GGAATTGTGTGCTGCATCGTGACCGTGTGTTTCTTCGCCGCCCCGCTGGC
TAGCTTGCTGCATGTGATACGGGCGAAGAACTCCGAGAGCCTTCCCCTGC
CTCTGATAGCCACGTCCTTCGTGGTCAGCCTGCAGTGGCTTATCTACGGT
ATACTGATATCGGACTCATTTATCCAGATTCCCAACTTTCTGGGCTGCAT
ACTGTCGCTGCTGCAGTTGGGTCTGTTCGTCCTCTACCCGCCGCGAAGCT
ACTCCGGCCACGGCTACAAGCTGGTCGAACAGGCAGTGCCGTTTTAGAAG
CTTTCTAGACC
BS15147.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8717-PA | 681 | slv-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slv-RC | 1247 | CG8717-RC | 286..966 | 17..697 | 3405 | 100 | Plus |
slv-RB | 1381 | CG8717-RB | 420..1100 | 17..697 | 3405 | 100 | Plus |
slv-RA | 1091 | CG8717-RA | 130..810 | 17..697 | 3405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:27:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8081273..8081503 | 402..172 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 8081031..8081209 | 577..399 | 895 | 100 | Minus |
2R | 25286936 | 2R | 8080840..8080962 | 697..575 | 615 | 100 | Minus |
2R | 25286936 | 2R | 8081860..8081939 | 173..94 | 400 | 100 | Minus |
2R | 25286936 | 2R | 8082015..8082091 | 93..17 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:28:05 has no hits.
BS15147.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:19 Download gff for
BS15147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-PA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:52:04 Download gff for
BS15147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8717-PA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:20 Download gff for
BS15147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 125..816 | 12..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:59:56 Download gff for
BS15147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 125..816 | 12..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:59:56 Download gff for
BS15147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8081274..8081503 | 172..401 | 100 | <- | Minus |
2R | 8081862..8081939 | 94..171 | 100 | <- | Minus |
2R | 8082015..8082096 | 12..93 | 97 | | Minus |
2R | 8081031..8081206 | 402..577 | 100 | <- | Minus |
2R | 8080834..8080959 | 578..702 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:20 Download gff for
BS15147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3969520..3969601 | 12..93 | 97 | | Minus |
arm_2R | 3968339..3968464 | 578..702 | 98 | <- | Minus |
arm_2R | 3968536..3968711 | 402..577 | 100 | <- | Minus |
arm_2R | 3968779..3969008 | 172..401 | 100 | <- | Minus |
arm_2R | 3969367..3969444 | 94..171 | 100 | <- | Minus |
BS15147.3prime Sequence
711 bp (711 high quality bases) assembled on 2006-10-24
> BS15147.3prime
ATGGTCTAGAAAGCTTCTACAATGGCACTGCCTGTTCGACCAGCTTGTAG
CCGTGGCCGGAGTAGCTTCGCGGCGGGTAGAGGACGAACAGACCCCCCTG
CGGCAGCGACAGTATGCAGCCCAGAAAGTTGGGAATCTGGATAAATGAGT
CCGATATCAGTATACCGTAGATAAGCCACTGCAGGCTGACCACGAAGGAC
GTGGCTATCAGAGGCAGGGGAAGGCTCTCGGAGTTCTTCGCCCGTATCAC
ATGCAGCAAGCTAGCCAGCGGGGCGGCGAAGAAACACACGGTCACGATGC
AGCACACAATTCCTGTGACGTGTATCATTCGATCGCGCTGATCTTCCAGC
CGATTGGTGTAGACAATGACCACCACCAGAACAGTCAGAACAAACCCAAA
CTGCTTTACACAGGCACGTTTGTTGACGGTAAACACATAGTAGATCAGCG
TGTAGACCAGAAAGAGCGTCGATCCGATGATGTTGACCAGCACAATGCTC
TGCTCGTTGGTTAAGACACCGTAGCGCAACCAAAAGCTGCACGATAAGAA
TCCGCATATGAAGGGAACTCCGGAAGAGTCCCCCGTGCTTTTCTTCTGGA
TGTACTTTCGGCATATCATGGCGCCGGAGAGGAACTGGAAGACGGTGCTG
ATCACCGCCGTCGTTGACAGCAGTGAGTCGTAGGCCACCGCCGACATGTC
GACTGATAACT
BS15147.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8717-PA | 681 | slv-RA | 1..674 | 697..24 | 3295 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:45:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slv-RC | 1247 | CG8717-RC | 286..966 | 697..17 | 3330 | 99.3 | Minus |
slv-RB | 1381 | CG8717-RB | 420..1100 | 697..17 | 3330 | 99.3 | Minus |
slv-RA | 1091 | CG8717-RA | 130..810 | 697..17 | 3330 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8081273..8081503 | 312..542 | 1155 | 100 | Plus |
2R | 25286936 | 2R | 8081031..8081209 | 137..315 | 895 | 100 | Plus |
2R | 25286936 | 2R | 8080840..8080962 | 17..139 | 540 | 95.9 | Plus |
2R | 25286936 | 2R | 8081860..8081939 | 541..620 | 400 | 100 | Plus |
2R | 25286936 | 2R | 8082015..8082091 | 621..697 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:45:27 has no hits.
BS15147.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:18 Download gff for
BS15147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-PA | 1..681 | 17..697 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:52:03 Download gff for
BS15147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8717-PA | 1..681 | 17..697 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:18 Download gff for
BS15147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 125..816 | 12..702 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:18 Download gff for
BS15147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 125..816 | 12..702 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:18 Download gff for
BS15147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8080834..8080959 | 12..136 | 94 | <- | Plus |
2R | 8081031..8081206 | 137..312 | 100 | <- | Plus |
2R | 8081274..8081503 | 313..542 | 100 | <- | Plus |
2R | 8081862..8081939 | 543..620 | 100 | <- | Plus |
2R | 8082015..8082096 | 621..702 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:18 Download gff for
BS15147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3968339..3968464 | 12..136 | 94 | <- | Plus |
arm_2R | 3968536..3968711 | 137..312 | 100 | <- | Plus |
arm_2R | 3968779..3969008 | 313..542 | 100 | <- | Plus |
arm_2R | 3969367..3969444 | 543..620 | 100 | <- | Plus |
arm_2R | 3969520..3969601 | 621..702 | 97 | | Plus |
BS15147.complete Sequence
713 bp assembled on 2006-11-01
GenBank Submission: FJ637881
> BS15147.complete
GAAGTTATCAGTCGACATGTCGGCGGTGGCCTACGACTCACTGCTGTCAA
CGACGGCGGTGATCAGCACCGTCTTCCAGTTCCTCTCCGGCGCCATGATA
TGCCGAAAGTACATCCAGAAGAAAAGCACGGGGGACTCTTCCGGAGTTCC
CTTCATATGCGGATTCTTATCGTGCAGCTTTTGGTTGCGCTACGGTGTCT
TAACCAACGAGCAGAGCATTGTGCTGGTCAACATCATCGGATCGACGCTC
TTTCTGGTCTACACGCTGATCTACTATGTGTTTACCGTCAACAAACGTGC
CTGTGTAAAGCAGTTTGGGTTTGTTCTGACTGTTCTGGTGGTGGTCATTG
TCTACACCAATCGGCTGGAAGATCAGCGCGATCGAATGATACACGTCACA
GGAATTGTGTGCTGCATCGTGACCGTGTGTTTCTTCGCCGCCCCGCTGGC
TAGCTTGCTGCATGTGATACGGGCGAAGAACTCCGAGAGCCTTCCCCTGC
CTCTGATAGCCACGTCCTTCGTGGTCAGCCTGCAGTGGCTTATCTACGGT
ATACTGATATCGGACTCATTTATCCAGATTCCCAACTTTCTGGGCTGCAT
ACTGTCGCTGCTGCAGTTGGGTCTGTTCGTCCTCTACCCGCCGCGAAGCT
ACTCCGGCCACGGCTACAAGCTGGTCGAACAGGCAGTGCCGTTTTAGAAG
CTTTCTAGACCAT
BS15147.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slv-RC | 681 | CG8717-PC | 1..681 | 17..697 | 3405 | 100 | Plus |
slv-RB | 681 | CG8717-PB | 1..681 | 17..697 | 3405 | 100 | Plus |
slv-RA | 681 | CG8717-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slv-RC | 1247 | CG8717-RC | 286..966 | 17..697 | 3405 | 100 | Plus |
slv-RB | 1381 | CG8717-RB | 420..1100 | 17..697 | 3405 | 100 | Plus |
slv-RA | 1091 | CG8717-RA | 130..810 | 17..697 | 3405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8081273..8081503 | 402..172 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 8081031..8081209 | 577..399 | 895 | 100 | Minus |
2R | 25286936 | 2R | 8080840..8080962 | 697..575 | 615 | 100 | Minus |
2R | 25286936 | 2R | 8081860..8081939 | 173..94 | 400 | 100 | Minus |
2R | 25286936 | 2R | 8082015..8082091 | 93..17 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:39:09 has no hits.
BS15147.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:29 Download gff for
BS15147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:08 Download gff for
BS15147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 275..966 | 12..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:43 Download gff for
BS15147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 130..810 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:29 Download gff for
BS15147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 275..966 | 12..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:39 Download gff for
BS15147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 130..810 | 17..697 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:39 Download gff for
BS15147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8082015..8082091 | 17..93 | 100 | | Minus |
2R | 8080840..8080959 | 578..697 | 100 | <- | Minus |
2R | 8081031..8081206 | 402..577 | 100 | <- | Minus |
2R | 8081274..8081503 | 172..401 | 100 | <- | Minus |
2R | 8081862..8081939 | 94..171 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:43 Download gff for
BS15147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3968345..3968464 | 578..697 | 100 | <- | Minus |
arm_2R | 3968536..3968711 | 402..577 | 100 | <- | Minus |
arm_2R | 3968779..3969008 | 172..401 | 100 | <- | Minus |
arm_2R | 3969367..3969444 | 94..171 | 100 | <- | Minus |
arm_2R | 3969520..3969596 | 17..93 | 100 | | Minus |
BS15147.pep Sequence
Translation from 16 to 696
> BS15147.pep
MSAVAYDSLLSTTAVISTVFQFLSGAMICRKYIQKKSTGDSSGVPFICGF
LSCSFWLRYGVLTNEQSIVLVNIIGSTLFLVYTLIYYVFTVNKRACVKQF
GFVLTVLVVVIVYTNRLEDQRDRMIHVTGIVCCIVTVCFFAAPLASLLHV
IRAKNSESLPLPLIATSFVVSLQWLIYGILISDSFIQIPNFLGCILSLLQ
LGLFVLYPPRSYSGHGYKLVEQAVPF*
BS15147.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slv-PC | 226 | CG8717-PC | 1..226 | 1..226 | 1151 | 100 | Plus |
slv-PB | 226 | CG8717-PB | 1..226 | 1..226 | 1151 | 100 | Plus |
slv-PA | 226 | CG8717-PA | 1..226 | 1..226 | 1151 | 100 | Plus |
CG7272-PA | 228 | CG7272-PA | 11..213 | 6..208 | 212 | 27.2 | Plus |