Clone BS15147 Report

Search the DGRC for BS15147

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:151
Well:47
Vector:pDNR-Dual
Associated Gene/Transcriptslv-RA
Protein status:BS15147.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15147.5prime Sequence

711 bp (711 high quality bases) assembled on 2006-10-23

> BS15147.5prime
GAAGTTATCAGTCGACATGTCGGCGGTGGCCTACGACTCACTGCTGTCAA
CGACGGCGGTGATCAGCACCGTCTTCCAGTTCCTCTCCGGCGCCATGATA
TGCCGAAAGTACATCCAGAAGAAAAGCACGGGGGACTCTTCCGGAGTTCC
CTTCATATGCGGATTCTTATCGTGCAGCTTTTGGTTGCGCTACGGTGTCT
TAACCAACGAGCAGAGCATTGTGCTGGTCAACATCATCGGATCGACGCTC
TTTCTGGTCTACACGCTGATCTACTATGTGTTTACCGTCAACAAACGTGC
CTGTGTAAAGCAGTTTGGGTTTGTTCTGACTGTTCTGGTGGTGGTCATTG
TCTACACCAATCGGCTGGAAGATCAGCGCGATCGAATGATACACGTCACA
GGAATTGTGTGCTGCATCGTGACCGTGTGTTTCTTCGCCGCCCCGCTGGC
TAGCTTGCTGCATGTGATACGGGCGAAGAACTCCGAGAGCCTTCCCCTGC
CTCTGATAGCCACGTCCTTCGTGGTCAGCCTGCAGTGGCTTATCTACGGT
ATACTGATATCGGACTCATTTATCCAGATTCCCAACTTTCTGGGCTGCAT
ACTGTCGCTGCTGCAGTTGGGTCTGTTCGTCCTCTACCCGCCGCGAAGCT
ACTCCGGCCACGGCTACAAGCTGGTCGAACAGGCAGTGCCGTTTTAGAAG
CTTTCTAGACC

BS15147.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8717-PA 681 slv-RA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
slv-RC 1247 CG8717-RC 286..966 17..697 3405 100 Plus
slv-RB 1381 CG8717-RB 420..1100 17..697 3405 100 Plus
slv-RA 1091 CG8717-RA 130..810 17..697 3405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8081273..8081503 402..172 1155 100 Minus
2R 25286936 2R 8081031..8081209 577..399 895 100 Minus
2R 25286936 2R 8080840..8080962 697..575 615 100 Minus
2R 25286936 2R 8081860..8081939 173..94 400 100 Minus
2R 25286936 2R 8082015..8082091 93..17 385 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:28:05 has no hits.

BS15147.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:19 Download gff for BS15147.5prime
Subject Subject Range Query Range Percent Splice Strand
slv-PA 1..681 17..697 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:52:04 Download gff for BS15147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8717-PA 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:20 Download gff for BS15147.5prime
Subject Subject Range Query Range Percent Splice Strand
slv-RA 125..816 12..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:59:56 Download gff for BS15147.5prime
Subject Subject Range Query Range Percent Splice Strand
slv-RA 125..816 12..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:59:56 Download gff for BS15147.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8081274..8081503 172..401 100 <- Minus
2R 8081862..8081939 94..171 100 <- Minus
2R 8082015..8082096 12..93 97   Minus
2R 8081031..8081206 402..577 100 <- Minus
2R 8080834..8080959 578..702 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:20 Download gff for BS15147.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3969520..3969601 12..93 97   Minus
arm_2R 3968339..3968464 578..702 98 <- Minus
arm_2R 3968536..3968711 402..577 100 <- Minus
arm_2R 3968779..3969008 172..401 100 <- Minus
arm_2R 3969367..3969444 94..171 100 <- Minus

BS15147.3prime Sequence

711 bp (711 high quality bases) assembled on 2006-10-24

> BS15147.3prime
ATGGTCTAGAAAGCTTCTACAATGGCACTGCCTGTTCGACCAGCTTGTAG
CCGTGGCCGGAGTAGCTTCGCGGCGGGTAGAGGACGAACAGACCCCCCTG
CGGCAGCGACAGTATGCAGCCCAGAAAGTTGGGAATCTGGATAAATGAGT
CCGATATCAGTATACCGTAGATAAGCCACTGCAGGCTGACCACGAAGGAC
GTGGCTATCAGAGGCAGGGGAAGGCTCTCGGAGTTCTTCGCCCGTATCAC
ATGCAGCAAGCTAGCCAGCGGGGCGGCGAAGAAACACACGGTCACGATGC
AGCACACAATTCCTGTGACGTGTATCATTCGATCGCGCTGATCTTCCAGC
CGATTGGTGTAGACAATGACCACCACCAGAACAGTCAGAACAAACCCAAA
CTGCTTTACACAGGCACGTTTGTTGACGGTAAACACATAGTAGATCAGCG
TGTAGACCAGAAAGAGCGTCGATCCGATGATGTTGACCAGCACAATGCTC
TGCTCGTTGGTTAAGACACCGTAGCGCAACCAAAAGCTGCACGATAAGAA
TCCGCATATGAAGGGAACTCCGGAAGAGTCCCCCGTGCTTTTCTTCTGGA
TGTACTTTCGGCATATCATGGCGCCGGAGAGGAACTGGAAGACGGTGCTG
ATCACCGCCGTCGTTGACAGCAGTGAGTCGTAGGCCACCGCCGACATGTC
GACTGATAACT

BS15147.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8717-PA 681 slv-RA 1..674 697..24 3295 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
slv-RC 1247 CG8717-RC 286..966 697..17 3330 99.3 Minus
slv-RB 1381 CG8717-RB 420..1100 697..17 3330 99.3 Minus
slv-RA 1091 CG8717-RA 130..810 697..17 3330 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8081273..8081503 312..542 1155 100 Plus
2R 25286936 2R 8081031..8081209 137..315 895 100 Plus
2R 25286936 2R 8080840..8080962 17..139 540 95.9 Plus
2R 25286936 2R 8081860..8081939 541..620 400 100 Plus
2R 25286936 2R 8082015..8082091 621..697 385 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:45:27 has no hits.

BS15147.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:18 Download gff for BS15147.3prime
Subject Subject Range Query Range Percent Splice Strand
slv-PA 1..681 17..697 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:52:03 Download gff for BS15147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8717-PA 1..681 17..697 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:18 Download gff for BS15147.3prime
Subject Subject Range Query Range Percent Splice Strand
slv-RA 125..816 12..702 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:18 Download gff for BS15147.3prime
Subject Subject Range Query Range Percent Splice Strand
slv-RA 125..816 12..702 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:18 Download gff for BS15147.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8080834..8080959 12..136 94 <- Plus
2R 8081031..8081206 137..312 100 <- Plus
2R 8081274..8081503 313..542 100 <- Plus
2R 8081862..8081939 543..620 100 <- Plus
2R 8082015..8082096 621..702 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:18 Download gff for BS15147.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3968339..3968464 12..136 94 <- Plus
arm_2R 3968536..3968711 137..312 100 <- Plus
arm_2R 3968779..3969008 313..542 100 <- Plus
arm_2R 3969367..3969444 543..620 100 <- Plus
arm_2R 3969520..3969601 621..702 97   Plus

BS15147.complete Sequence

713 bp assembled on 2006-11-01

GenBank Submission: FJ637881

> BS15147.complete
GAAGTTATCAGTCGACATGTCGGCGGTGGCCTACGACTCACTGCTGTCAA
CGACGGCGGTGATCAGCACCGTCTTCCAGTTCCTCTCCGGCGCCATGATA
TGCCGAAAGTACATCCAGAAGAAAAGCACGGGGGACTCTTCCGGAGTTCC
CTTCATATGCGGATTCTTATCGTGCAGCTTTTGGTTGCGCTACGGTGTCT
TAACCAACGAGCAGAGCATTGTGCTGGTCAACATCATCGGATCGACGCTC
TTTCTGGTCTACACGCTGATCTACTATGTGTTTACCGTCAACAAACGTGC
CTGTGTAAAGCAGTTTGGGTTTGTTCTGACTGTTCTGGTGGTGGTCATTG
TCTACACCAATCGGCTGGAAGATCAGCGCGATCGAATGATACACGTCACA
GGAATTGTGTGCTGCATCGTGACCGTGTGTTTCTTCGCCGCCCCGCTGGC
TAGCTTGCTGCATGTGATACGGGCGAAGAACTCCGAGAGCCTTCCCCTGC
CTCTGATAGCCACGTCCTTCGTGGTCAGCCTGCAGTGGCTTATCTACGGT
ATACTGATATCGGACTCATTTATCCAGATTCCCAACTTTCTGGGCTGCAT
ACTGTCGCTGCTGCAGTTGGGTCTGTTCGTCCTCTACCCGCCGCGAAGCT
ACTCCGGCCACGGCTACAAGCTGGTCGAACAGGCAGTGCCGTTTTAGAAG
CTTTCTAGACCAT

BS15147.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
slv-RC 681 CG8717-PC 1..681 17..697 3405 100 Plus
slv-RB 681 CG8717-PB 1..681 17..697 3405 100 Plus
slv-RA 681 CG8717-PA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
slv-RC 1247 CG8717-RC 286..966 17..697 3405 100 Plus
slv-RB 1381 CG8717-RB 420..1100 17..697 3405 100 Plus
slv-RA 1091 CG8717-RA 130..810 17..697 3405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8081273..8081503 402..172 1155 100 Minus
2R 25286936 2R 8081031..8081209 577..399 895 100 Minus
2R 25286936 2R 8080840..8080962 697..575 615 100 Minus
2R 25286936 2R 8081860..8081939 173..94 400 100 Minus
2R 25286936 2R 8082015..8082091 93..17 385 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:39:09 has no hits.

BS15147.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:29 Download gff for BS15147.complete
Subject Subject Range Query Range Percent Splice Strand
slv-RA 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:08 Download gff for BS15147.complete
Subject Subject Range Query Range Percent Splice Strand
slv-RA 275..966 12..702 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:43 Download gff for BS15147.complete
Subject Subject Range Query Range Percent Splice Strand
slv-RA 130..810 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:29 Download gff for BS15147.complete
Subject Subject Range Query Range Percent Splice Strand
slv-RA 275..966 12..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:39 Download gff for BS15147.complete
Subject Subject Range Query Range Percent Splice Strand
slv-RA 130..810 17..697 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:39 Download gff for BS15147.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8082015..8082091 17..93 100   Minus
2R 8080840..8080959 578..697 100 <- Minus
2R 8081031..8081206 402..577 100 <- Minus
2R 8081274..8081503 172..401 100 <- Minus
2R 8081862..8081939 94..171 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:43 Download gff for BS15147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3968345..3968464 578..697 100 <- Minus
arm_2R 3968536..3968711 402..577 100 <- Minus
arm_2R 3968779..3969008 172..401 100 <- Minus
arm_2R 3969367..3969444 94..171 100 <- Minus
arm_2R 3969520..3969596 17..93 100   Minus

BS15147.pep Sequence

Translation from 16 to 696

> BS15147.pep
MSAVAYDSLLSTTAVISTVFQFLSGAMICRKYIQKKSTGDSSGVPFICGF
LSCSFWLRYGVLTNEQSIVLVNIIGSTLFLVYTLIYYVFTVNKRACVKQF
GFVLTVLVVVIVYTNRLEDQRDRMIHVTGIVCCIVTVCFFAAPLASLLHV
IRAKNSESLPLPLIATSFVVSLQWLIYGILISDSFIQIPNFLGCILSLLQ
LGLFVLYPPRSYSGHGYKLVEQAVPF*

BS15147.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
slv-PC 226 CG8717-PC 1..226 1..226 1151 100 Plus
slv-PB 226 CG8717-PB 1..226 1..226 1151 100 Plus
slv-PA 226 CG8717-PA 1..226 1..226 1151 100 Plus
CG7272-PA 228 CG7272-PA 11..213 6..208 212 27.2 Plus