Clone Sequence Records
BS15154.3prime Sequence
340 bp (340 high quality bases) assembled on 2006-10-24
> BS15154.3prime
ATGGTCTAGAAAGCTTTTACTTGGTTGGTGCCATTGCAGAACATTCATCT
GGAACTTCAGACCGGCACATTTTCAAATTGGGATCAAAGTACTGCTCTCA
CTTTGCAGCTCTTAATCAACGACAAAACTGATCCATTGACCACGTAACAA
TAAACGTAGGTTCTACAAGTTGGATCAGCCTGGTTTTCCATTATGGTGGT
GGTTGTAACTTCGCTGCAGGCTTCTTCCGCACTCCAAGTCTTCGAGTTGT
GGTCGTCAAACTCTGGAGCTGGCAAAGCCGTGAGGCAATGAGCCAGCAAC
AGTAAAAACATTATACGCAGCCACATGTCGACTGATAACT
BS15154.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32284-PA | 309 | CG32284-RA | 1..229 | 326..98 | 1145 | 100 | Minus |
CG32284-PA | 309 | CG32284-RA | 232..305 | 94..21 | 370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32284-RA | 457 | CG32284-RA | 7..317 | 327..16 | 1505 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:54:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3186759..3186899 | 300..160 | 705 | 100 | Minus |
3L | 28110227 | 3L | 3186963..3187105 | 159..16 | 640 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:54:17 has no hits.
BS15154.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:31 Download gff for
BS15154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32284-PA | 1..309 | 17..326 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:52:20 Download gff for
BS15154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32284-PA | 1..309 | 17..326 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:03 Download gff for
BS15154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32284-RA | 1..317 | 16..329 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:47:29 Download gff for
BS15154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32284-RA | 1..317 | 16..329 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:47:29 Download gff for
BS15154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3186670..3186697 | 300..327 | 100 | -> | Minus |
3L | 3186760..3186899 | 160..299 | 100 | -> | Minus |
3L | 3186963..3187105 | 16..159 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:03 Download gff for
BS15154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3186670..3186697 | 300..327 | 100 | -> | Minus |
arm_3L | 3186760..3186899 | 160..299 | 100 | -> | Minus |
arm_3L | 3186963..3187105 | 16..159 | 97 | | Minus |
BS15154.5prime Sequence
339 bp (339 high quality bases) assembled on 2006-10-23
> BS15154.5prime
GAAGTTATCAGTCGACATGTGGCTGCGTATAATGTTTTTACTGTTGCTGG
CTCATTGCCTCACGGCTTTGCCAGCTCCAGAGTTTGACGACCACAACTCG
AAGACTTGGAGTGCGGAAGAAGCCTGCAGCGAAGTTACAACCACCACCAT
AATGGAAAACCAGGCTGATCCAACTTGTAGAACCTACGTTTATTGTTACG
TGGTCAATGGATCAGTTTTGTCGTTGATTAAGAGCTGCAAAGTGAACCAG
TACTTTGATCCCAATTTGAAAATGTGCCGGTCTGAAGTTCCAGATGAATG
TTCTGCAATGGCACCAACCAACTAAAAGCTTTCTAGACC
BS15154.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32284-PA | 309 | CG32284-RA | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:42:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32284-RA | 457 | CG32284-RA | 7..317 | 16..326 | 1555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3186963..3187105 | 184..326 | 715 | 100 | Plus |
3L | 28110227 | 3L | 3186759..3186899 | 43..183 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:42:38 has no hits.
BS15154.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:32 Download gff for
BS15154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32284-PA | 1..309 | 17..325 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:52:21 Download gff for
BS15154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32284-PA | 1..309 | 17..325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:03:54 Download gff for
BS15154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32284-RA | 1..317 | 14..326 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:09 Download gff for
BS15154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32284-RA | 1..317 | 14..326 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:09 Download gff for
BS15154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3186670..3186697 | 16..43 | 100 | -> | Plus |
3L | 3186760..3186899 | 44..183 | 100 | -> | Plus |
3L | 3186963..3187105 | 184..326 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:03:54 Download gff for
BS15154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3186670..3186697 | 16..43 | 100 | -> | Plus |
arm_3L | 3186760..3186899 | 44..183 | 100 | -> | Plus |
arm_3L | 3186963..3187105 | 184..326 | 100 | | Plus |
BS15154.complete Sequence
341 bp assembled on 2006-11-01
GenBank Submission: FJ637882
> BS15154.complete
GAAGTTATCAGTCGACATGTGGCTGCGTATAATGTTTTTACTGTTGCTGG
CTCATTGCCTCACGGCTTTGCCAGCTCCAGAGTTTGACGACCACAACTCG
AAGACTTGGAGTGCGGAAGAAGCCTGCAGCGAAGTTACAACCACCACCAT
AATGGAAAACCAGGCTGATCCAACTTGTAGAACCTACGTTTATTGTTACG
TGGTCAATGGATCAGTTTTGTCGTTGATTAAGAGCTGCAAAGTGAACCAG
TACTTTGATCCCAATTTGAAAATGTGCCGGTCTGAAGTTCCAGATGAATG
TTCTGCAATGGCACCAACCAACTAAAAGCTTTCTAGACCAT
BS15154.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32284-RA | 309 | CG32284-PA | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32284-RA | 457 | CG32284-RA | 7..317 | 16..326 | 1555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3186963..3187105 | 184..326 | 715 | 100 | Plus |
3L | 28110227 | 3L | 3186759..3186899 | 43..183 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:51:46 has no hits.
BS15154.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:29 Download gff for
BS15154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32284-RA | 1..309 | 17..325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:44 Download gff for
BS15154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32284-RA | 1..317 | 14..326 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:05 Download gff for
BS15154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32284-RA | 8..314 | 17..323 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:29 Download gff for
BS15154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32284-RA | 1..317 | 14..326 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:50 Download gff for
BS15154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32284-RA | 8..314 | 17..323 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:50 Download gff for
BS15154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3186760..3186899 | 44..183 | 100 | -> | Plus |
3L | 3186963..3187102 | 184..323 | 100 | | Plus |
3L | 3186671..3186697 | 17..43 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:05 Download gff for
BS15154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3186760..3186899 | 44..183 | 100 | -> | Plus |
arm_3L | 3186963..3187102 | 184..323 | 100 | | Plus |
arm_3L | 3186671..3186697 | 17..43 | 100 | -> | Plus |
BS15154.pep Sequence
Translation from 16 to 324
> BS15154.pep
MWLRIMFLLLLAHCLTALPAPEFDDHNSKTWSAEEACSEVTTTTIMENQA
DPTCRTYVYCYVVNGSVLSLIKSCKVNQYFDPNLKMCRSEVPDECSAMAP
TN*
BS15154.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32284-PA | 102 | CG32284-PA | 1..102 | 1..102 | 555 | 100 | Plus |
CG14957-PA | 96 | CG14957-PA | 1..95 | 1..95 | 254 | 50.5 | Plus |
CG42494-PC | 283 | CG42494-PC | 215..283 | 28..96 | 232 | 55.1 | Plus |
CG42494-PB | 283 | CG42494-PB | 215..283 | 28..96 | 232 | 55.1 | Plus |
CG42494-PA | 283 | CG42494-PA | 215..283 | 28..96 | 232 | 55.1 | Plus |
CG42494-PC | 283 | CG42494-PC | 123..188 | 31..95 | 163 | 42.4 | Plus |
CG42494-PB | 283 | CG42494-PB | 123..188 | 31..95 | 163 | 42.4 | Plus |