Clone Sequence Records
BS15157.3prime Sequence
430 bp (430 high quality bases) assembled on 2006-10-23
> BS15157.3prime
ATGGTCTAGAAAGCTTTTACCCATTAGGTGCTAGTTTCTGTGGCCACTTC
GCTGTTTTGTTCGGTTGTTGAGTCCGTGGAGGAAACCGCAGACTTTCCCA
AACATGCCTGTTCGCACTGCTCCTTGGATTCGAAGTTGTTCTTGTTGCCG
GCACATCCACCGTAAACGAACTCCTCGCAGGATTGTGTATCCACGTTGTA
GGCGTAGCGATAGAACAGAGCGAAACAGCGACCGGTTTCCTTGGGCTGAT
GACAGTCCTCCGGAACAGTGAGCTCACTGGCATCAGGCAGGGGTTTGGCC
ACCGCGGGCTCCTCCGCCTTCTCCACGACGACATCCGAGGGAGCTGCACG
AATTCCGGCTGCCAGGAGCAGAACAGCCGCGAATACTATGAAACTGAAGC
TATATCTAAAGCACATGTCGACTGATAACT
BS15157.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3604-PA | 399 | CG3604-RA | 1..391 | 416..26 | 1930 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:43:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3604-RB | 631 | CG3604-RB | 97..492 | 421..26 | 1950 | 99.5 | Minus |
| CG3604-RA | 571 | CG3604-RA | 37..432 | 421..26 | 1950 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3697381..3697776 | 26..421 | 1950 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:43:07 has no hits.
BS15157.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:38 Download gff for
BS15157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3604-PA | 1..391 | 26..416 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:52:29 Download gff for
BS15157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3604-PA | 1..391 | 26..416 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:04 Download gff for
BS15157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3604-RA | 37..432 | 26..421 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:37 Download gff for
BS15157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3604-RA | 37..432 | 26..421 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:37 Download gff for
BS15157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3697383..3697776 | 28..421 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:04 Download gff for
BS15157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3697383..3697776 | 28..421 | 99 | | Plus |
BS15157.5prime Sequence
429 bp (429 high quality bases) assembled on 2006-10-23
> BS15157.5prime
GAAGTTATCATTCGACATGTGCTTTAGATATAGCTTCAGTTTCATAGTAT
TCGCGGCTGTTCTGCTCCTGGCAGCCGGAATTCGTGCAGCTCCCTCGGAT
GTCGTCGTGGAGAAGGCGGAGGAGCCCGCGGTGGCCAAACCCCTGCCTGA
TGCCAGTGAGCTCACTGTTCCGGAGGACTGTCATCAGCCCAAGGAAACCG
GTCGCTGTTTCGCTCTGTTCTATCGCTACGCCTACAACGTGGATACACAA
TCCTGCGAGGAGTTCGTTTACGGTGGATGTGCCGGCAACAAGAACAACTT
CGAATCCAAGGAGCAGTGCGAACAGGCATGTTTGGTAAAGTCTGCGGTTT
CCTCCACGGACTCAACAACCGAACAAAACAGCGAAGTGGCCACAGAAACT
AGCACCTCGTCTTAAAAGCTTTCTAGACC
BS15157.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3604-PA | 399 | CG3604-RA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3604-RB | 631 | CG3604-RB | 97..502 | 12..417 | 2015 | 99.8 | Plus |
| CG3604-RA | 571 | CG3604-RA | 37..442 | 12..417 | 2015 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3697371..3697776 | 417..12 | 2015 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:13:08 has no hits.
BS15157.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:39 Download gff for
BS15157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3604-PA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:52:30 Download gff for
BS15157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3604-PA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:54 Download gff for
BS15157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3604-RA | 37..450 | 12..426 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:35:16 Download gff for
BS15157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3604-RA | 37..450 | 12..426 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:35:16 Download gff for
BS15157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3697363..3697776 | 12..426 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:54 Download gff for
BS15157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3697363..3697776 | 12..426 | 98 | | Minus |
BS15157.complete Sequence
431 bp assembled on 2006-11-01
GenBank Submission: FJ637883
> BS15157.complete
GAAGTTATCAGTCGACATGTGCTTTAGATATAGCTTCAGTTTCATAGTAT
TCGCGGCTGTTCTGCTCCTGGCAGCCGGAATTCGTGCAGCTCCCTCGGAT
GTCGTCGTGGAGAAGGCGGAGGAGCCCGCGGTGGCCAAACCCCTGCCTGA
TGCCAGTGAGCTCACTGTTCCGGAGGACTGTCATCAGCCCAAGGAAACCG
GTCGCTGTTTCGCTCTGTTCTATCGCTACGCCTACAACGTGGATACACAA
TCCTGCGAGGAGTTCGTTTACGGTGGATGTGCCGGCAACAAGAACAACTT
CGAATCCAAGGAGCAGTGCGAACAGGCATGTTTGGTAAAGTCTGCGGTTT
CCTCCACGGACTCAACAACCGAACAAAACAGCGAAGTGGCCACAGAAACT
AGCACCTCGTCTTAAAAGCTTTCTAGACCAT
BS15157.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3604-RB | 399 | CG3604-PB | 1..399 | 17..415 | 1995 | 100 | Plus |
| CG3604-RA | 399 | CG3604-PA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3604-RB | 631 | CG3604-RB | 97..502 | 12..417 | 2015 | 99.8 | Plus |
| CG3604-RA | 571 | CG3604-RA | 37..442 | 12..417 | 2015 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3697371..3697776 | 417..12 | 2015 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:09:01 has no hits.
BS15157.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:39:02 Download gff for
BS15157.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3604-RA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:44 Download gff for
BS15157.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3604-RA | 97..510 | 12..426 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:11 Download gff for
BS15157.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3604-RA | 42..438 | 17..413 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:39:02 Download gff for
BS15157.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3604-RA | 2..415 | 12..426 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:56 Download gff for
BS15157.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3604-RA | 42..438 | 17..413 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:56 Download gff for
BS15157.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3697375..3697771 | 17..413 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:11 Download gff for
BS15157.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3697375..3697771 | 17..413 | 100 | | Minus |
BS15157.pep Sequence
Translation from 16 to 414
> BS15157.pep
MCFRYSFSFIVFAAVLLLAAGIRAAPSDVVVEKAEEPAVAKPLPDASELT
VPEDCHQPKETGRCFALFYRYAYNVDTQSCEEFVYGGCAGNKNNFESKEQ
CEQACLVKSAVSSTDSTTEQNSEVATETSTSS*
BS15157.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3604-PB | 132 | CG3604-PB | 1..132 | 1..132 | 685 | 100 | Plus |
| CG3604-PA | 132 | CG3604-PA | 1..132 | 1..132 | 685 | 100 | Plus |
| CG10031-PA | 129 | CG10031-PA | 56..128 | 36..108 | 155 | 39.7 | Plus |
| CG2816-PB | 84 | CG2816-PB | 31..81 | 55..105 | 152 | 51 | Plus |
| CG13748-PA | 113 | CG13748-PA | 8..110 | 9..105 | 146 | 35 | Plus |
