Clone Sequence Records
BS15159.3prime Sequence
897 bp (782 high quality bases) assembled on 2006-10-24
> BS15159.3prime
ATGGTCTAGAAAGCTTCTACTTTGTAATTTCGTTGGCTGACTCCAACTGA
GATTCGGATTTATTCGACTGCCGTTTGCGTGAAAAGCAAGGGAACCAGTA
CCATTTCTCGCCCTTGGCGAATATTTCGCCCTCCTCTAGAGTTTGTGGTA
GTTGCTTGTGCAAAGTTTCTGGAAGAGTTAGGCACAAACAAGCGCCTATA
ATGAGGAGGAAGCTGATCAACAGTGAGGGCAATGGCTTGTAGAATGTTCC
CAAGTAGATGATGTAGGAGCTGAAGAAAGCGAAGGCATTGCCCACCACAT
GGATGTTGGCCACTCCTCGTCCTCGAACACTGGTAGGTATAATCTCCGCC
GCGTACTGAGCCTCCGCATCGTAGGCAACAACCGCTCCGAATCTTGCCAA
GCACACCATGAATCCCAGGAGTACAGAGTAGTTTGCTGGATCTAGAGTGC
CCACCAGGTAGCCGGTGGTCGCCGTGATGAAGGCACCAACAAGAAGAGAG
GCGCAGGCCATGCCTTTTCGCCCGATTTTGTTCTGGAACAGGATAATGGA
TAGACCACCAGGAAGGACGACGAATCCTGAGTAGGAGAAGAGCTTGAATG
GTGATATGCCCACGCCTTCAACATTGCGACTCAGGATGTCGAATGCAATT
GTAATGATCATCGATTTGATCAATAGAATAATTGTGAACTTTCTCAGTCT
TGGAGTCCTCAACATACCCATAAAGGTATCTGAGGATTTCTTTTGGGCAC
TGTTCAACTTCTCTCGATAATGCTTGATGAACTCATCGAAAACAGAGTCT
TCTACTTGGCGTCCATTGAATTTGGCGACACTTTTGAGGTTGTTAACTGC
CTTGTCGAATTTTCCTTTCGTTAGTAGCCACTCGACGCTTTCGTGAA
BS15159.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17752-PA | 1617 | CG17752-RA | 737..1617 | 897..17 | 4355 | 99.7 | Minus |
| CG17751-PA | 1401 | CG17751-RA | 682..840 | 730..572 | 670 | 96.8 | Minus |
| CG17751-PA | 1401 | CG17751-RA | 1089..1184 | 323..228 | 430 | 97.9 | Minus |
| CG17751-PA | 1401 | CG17751-RA | 863..914 | 549..498 | 135 | 90.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17752-RA | 1716 | CG17752-RA | 779..1659 | 897..17 | 4375 | 99.8 | Minus |
| CG17751-RB | 1666 | CG17751-RB | 745..1619 | 895..21 | 2110 | 82.9 | Minus |
| CG16727-RA | 2014 | CG16727-RA | 955..1029 | 826..752 | 180 | 82.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19611677..19612184 | 662..155 | 2540 | 100 | Minus |
| 3R | 32079331 | 3R | 19608573..19609079 | 661..155 | 1365 | 84.6 | Minus |
| 3R | 32079331 | 3R | 19611381..19611616 | 897..662 | 1180 | 100 | Minus |
| 3R | 32079331 | 3R | 19612242..19612380 | 155..17 | 665 | 98.6 | Minus |
| 3R | 32079331 | 3R | 19608284..19608517 | 895..662 | 585 | 83.3 | Minus |
| 3R | 32079331 | 3R | 19609156..19609275 | 140..21 | 210 | 78.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:23:47 has no hits.
BS15159.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:43 Download gff for
BS15159.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17752-PA | 739..1617 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:52:36 Download gff for
BS15159.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17752-PA | 739..1617 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:51 Download gff for
BS15159.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17752-RA | 779..1661 | 11..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:59:03 Download gff for
BS15159.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17752-RA | 779..1661 | 11..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:59:03 Download gff for
BS15159.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19611381..19611615 | 663..897 | 100 | -> | Minus |
| 3R | 19611677..19612183 | 156..662 | 100 | -> | Minus |
| 3R | 19612242..19612382 | 11..155 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:51 Download gff for
BS15159.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15437103..15437337 | 663..897 | 100 | -> | Minus |
| arm_3R | 15437399..15437905 | 156..662 | 100 | -> | Minus |
| arm_3R | 15437964..15438104 | 11..155 | 95 | | Minus |
BS15159.5prime Sequence
847 bp (829 high quality bases) assembled on 2006-10-23
> BS15159.5prime
GAAGTTATCAGTCGACATGGATCTTCAGCGTGTCCTGGAGAAGTGCGGAA
ACTTCGGCCCCTACCAAATCCTGCTCCTTGGACTCTATGGATACACTAAT
ATAGTGTCCTCGCTGCACTACTTTTCGCAGACTCTGATCAGTTTCACGCC
CTCGCACAGATGTTCTGCGCCAGTGGAAGAATTTTCACAGAATTTCACTG
AACTGTTGTCCTGCAGTGTCATTCAGTATGATGTCGACATGACCTCTTTT
CGGGATAACAAGTGCTCCTCCTGGGACTTCGATAAGGAAAGCAACTACGA
GAGTATCACCACAGAGCTGGAGTGGGTCTGCGATGATGCCTACAAACTGG
CGGTGGGTCAGTCCTTCTTCTTTATTGGATCCGCGCTGGGAAGTATATTC
TTCGGATACTTGGCCGATCGCATAGGTCGTCTCCCTGCCTGCGTTCTATC
GACCTTGACAGGAGCCTCTGGAGATTTCTTCACCTCCTTCGTGGGCAGTC
TGCCTATGTTCTCGTTCACCCGTTTTATATCTGGTCTCTCCATGGACACA
CAATATGTCCTAATGTACATTTTGGTTTTCGAGTACTTGAGCCCACAACA
CCGCACCTTTGGTCTGAATATCATCTTGGGTGTTTTCTACTCAATTGGAC
TAATGATCTCGCCCTGGATAGCAATTTGGCTGGGCAATTGGCGTAGTTAC
CTCTGGGCGGCCTCCCTTCCAGCTCTAGGAATGTTAATTTTTCCGCTGTT
CCTTCACGAAAGCGTCGAGTGGCTACTAACGAAAGGAAAATTCGACAAGG
CAGTTAACAACCTCAAAAGTGTCGCCAAATTCAATGGACGCCAAGTA
BS15159.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17752-PA | 1617 | CG17752-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
| CG17751-PA | 1401 | CG17751-RA | 49..257 | 287..495 | 920 | 97.6 | Plus |
| CG17751-PA | 1401 | CG17751-RA | 304..371 | 542..609 | 265 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17752-RA | 1716 | CG17752-RA | 39..873 | 13..847 | 4160 | 99.9 | Plus |
| CG17751-RB | 1666 | CG17751-RB | 24..836 | 13..846 | 1975 | 83.1 | Plus |
| CG16727-RA | 2014 | CG16727-RA | 690..871 | 559..740 | 370 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19611203..19611475 | 575..847 | 1365 | 100 | Plus |
| 3R | 32079331 | 3R | 19610880..19611144 | 311..575 | 1310 | 99.6 | Plus |
| 3R | 32079331 | 3R | 19607783..19608047 | 311..575 | 1055 | 93.2 | Plus |
| 3R | 32079331 | 3R | 19610657..19610816 | 157..316 | 800 | 100 | Plus |
| 3R | 32079331 | 3R | 19610263..19610409 | 13..159 | 720 | 99.3 | Plus |
| 3R | 32079331 | 3R | 19608104..19608375 | 575..846 | 505 | 79 | Plus |
| 3R | 32079331 | 3R | 19607277..19607423 | 13..159 | 390 | 84.4 | Plus |
| 3R | 32079331 | 3R | 19614357..19614519 | 578..740 | 320 | 79.8 | Plus |
| 3R | 32079331 | 3R | 19607660..19607717 | 259..316 | 185 | 87.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:53:46 has no hits.
BS15159.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:18:44 Download gff for
BS15159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17752-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:52:36 Download gff for
BS15159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17752-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:29:56 Download gff for
BS15159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17752-RA | 33..872 | 5..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:07:12 Download gff for
BS15159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17752-RA | 33..872 | 5..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:07:12 Download gff for
BS15159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19610660..19610816 | 160..316 | 100 | -> | Plus |
| 3R | 19610886..19611144 | 317..575 | 100 | -> | Plus |
| 3R | 19611204..19611474 | 576..846 | 100 | | Plus |
| 3R | 19610257..19610409 | 5..159 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:29:56 Download gff for
BS15159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15436608..15436866 | 317..575 | 100 | -> | Plus |
| arm_3R | 15435979..15436131 | 5..159 | 96 | -> | Plus |
| arm_3R | 15436382..15436538 | 160..316 | 100 | -> | Plus |
| arm_3R | 15436926..15437196 | 576..846 | 100 | | Plus |
BS15159.complete Sequence
1649 bp assembled on 2009-08-26
GenBank Submission: KX802213
> BS15159.complete
GAAGTTATCAGTCGACATGGATCTTCAGCGTGTCCTGGAGAAGTGCGGAA
ACTTCGGCCCCTACCAAATCCTGCTCCTTGGACTCTATGGATACACTAAT
ATAGTGTCCTCGCTGCACTACTTTTCGCAGACTCTGATCAGTTTCACGCC
CTCGCACAGATGTTCTGCGCCAGTGGAAGAATTTTCACAGAATTTCACTG
AACTGTTGTCCTGCAGTGTCATTCAGTATGATGTCGACATGACCTCTTTT
CGGGATAACAAGTGCTCCTCCTGGGACTTCGATAAGGAAAGCAACTACGA
GAGTATCACCACAGAGCTGGAGTGGGTCTGCGATGATGCCTACAAACTGG
CGGTGGGTCAGTCCTTCTTCTTTATTGGATCCGCGCTGGGAAGTATATTC
TTCGGATACTTGGCCGATCGCATAGGTCGTCTCCCTGCCTGCGTTCTATC
GACCTTGACAGGAGCCTCTGGAGATTTCTTCACCTCCTTCGTGGGCAGTC
TGCCTATGTTCTCGTTCACCCGTTTTATATCTGGTCTCTCCATGGACACA
CAATATGTCCTAATGTACATTTTGGTTTTCGAGTACTTGAGCCCACAACA
CCGCACCTTTGGTCTGAATATCATCTTGGGTGTTTTCTACTCAATTGGAC
TAATGATCTCGCCCTGGATAGCAATTTGGCTGGGCAATTGGCGTAGTTAC
CTCTGGGCGGCCTCCCTTCCAGCTCTAGGAATGTTAATTTTTCCGCTGTT
CCTTCACGAAAGCGTCGAGTGGCTACTAACGAAAGGAAAATTCGACAAGG
CAGTTAACAACCTCAAAAGTGTCGCCAAATTCAATGGACGCCAAGTAGAA
GACTCTGTTTTCGATGAGTTCATCAAGCATTATCGAGAGAAGTTGAACAG
TGCCCAAAAGAAATCCTCAGATACCTTTATGGGTATGTTGAGGACTCCAA
GACTGAGAAAGTTCACAATTATTCTATTGATCAAATCGATGATCATTACA
ATTGCATTCGACATCCTGAGTCGCAATGTTGAAGGCGTGGGCATATCACC
ATTCAAGCTCTTCTCCTACTCAGGATTCGTCGTCCTTCCTGGTGGTCTAT
CCATTATCCTGTTCCAGAACAAAATCGGGCGAAAAGGCATGGCCTGCGCC
TCTCTTCTTGTTGGTGCCTTCATCACGGCGACCACCGGCTACCTGGTGGG
CACTCTAGATCCAGCAAACTACTCTGTACTCCTGGGATTCATGGTGTGCT
TGGCAAGATTCGGAGCGGTTGTTGCCTACGATGCGGAGGCTCAGTACGCG
GCGGAGATTATACCTACCAGTGTTCGAGGACGAGGAGTGGCCAACATCCA
TGTGGTGGGCAATGCCTTCGCTTTCTTCAGCTCCTACATCATCTACTTGG
GAACATTCTACAAGCCATTGCCCTCACTGTTGATCAGCTTCCTCCTCATT
ATAGGCGCTTGTTTGTGCCTAACTCTTCCAGAAACTTTGCACAAGCAACT
ACCACAAACTCTAGAGGAGGGCGAAATATTCGCCAAGGGCGAGAAATGGT
ACTTTTTCCCTTGCTTTTCACGCAAACGGCAGTCGAATAAATCCGAATCT
CAGTTGGAGTCAGCCAACGAAATTACAAAGTAGAAGCTTTCTAGACCAT
BS15159.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17752-RA | 1617 | CG17752-PA | 1..1617 | 17..1633 | 8085 | 100 | Plus |
| CG17751-RB | 1602 | CG17751-PB | 1..1592 | 17..1629 | 3855 | 82.9 | Plus |
| CG16727-RA | 1638 | CG16727-PA | 570..909 | 559..898 | 395 | 74.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17752-RA | 1716 | CG17752-RA | 39..1659 | 13..1633 | 8090 | 99.9 | Plus |
| CG17751-RB | 1666 | CG17751-RB | 24..1619 | 13..1629 | 3860 | 82.9 | Plus |
| CG16727-RA | 2014 | CG16727-RA | 690..1029 | 559..898 | 395 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19611677..19612184 | 988..1495 | 2540 | 100 | Plus |
| 3R | 32079331 | 3R | 19611203..19611616 | 575..988 | 2070 | 100 | Plus |
| 3R | 32079331 | 3R | 19608573..19609079 | 989..1495 | 1365 | 84.6 | Plus |
| 3R | 32079331 | 3R | 19610880..19611144 | 311..575 | 1310 | 99.6 | Plus |
| 3R | 32079331 | 3R | 19607783..19608047 | 311..575 | 1055 | 93.2 | Plus |
| 3R | 32079331 | 3R | 19608104..19608517 | 575..988 | 915 | 81.4 | Plus |
| 3R | 32079331 | 3R | 19610657..19610816 | 157..316 | 800 | 100 | Plus |
| 3R | 32079331 | 3R | 19610263..19610409 | 13..159 | 720 | 99.3 | Plus |
| 3R | 32079331 | 3R | 19612242..19612380 | 1495..1633 | 695 | 100 | Plus |
| 3R | 32079331 | 3R | 19607277..19607423 | 13..159 | 390 | 84.4 | Plus |
| 3R | 32079331 | 3R | 19614357..19614677 | 578..898 | 345 | 73.8 | Plus |
| 3R | 32079331 | 3R | 19609156..19609275 | 1510..1629 | 225 | 79.2 | Plus |
| 3R | 32079331 | 3R | 19607660..19607717 | 259..316 | 185 | 87.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:34:29 has no hits.
BS15159.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:18 Download gff for
BS15159.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17752-RA | 43..1659 | 17..1633 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:29 Download gff for
BS15159.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17752-RA | 43..1659 | 17..1633 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:48 Download gff for
BS15159.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17752-RA | 43..1659 | 17..1633 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:48 Download gff for
BS15159.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19610267..19610409 | 17..159 | 100 | -> | Plus |
| 3R | 19610660..19610816 | 160..316 | 100 | -> | Plus |
| 3R | 19610886..19611144 | 317..575 | 100 | -> | Plus |
| 3R | 19611204..19611615 | 576..987 | 100 | -> | Plus |
| 3R | 19611677..19612183 | 988..1494 | 100 | -> | Plus |
| 3R | 19612242..19612380 | 1495..1633 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:29 Download gff for
BS15159.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15437964..15438102 | 1495..1633 | 100 | | Plus |
| arm_3R | 15435989..15436131 | 17..159 | 100 | -> | Plus |
| arm_3R | 15436382..15436538 | 160..316 | 100 | -> | Plus |
| arm_3R | 15436608..15436866 | 317..575 | 100 | -> | Plus |
| arm_3R | 15436926..15437337 | 576..987 | 100 | -> | Plus |
| arm_3R | 15437399..15437905 | 988..1494 | 100 | -> | Plus |
BS15159.pep Sequence
Translation from 16 to 1632
> BS15159.pep
MDLQRVLEKCGNFGPYQILLLGLYGYTNIVSSLHYFSQTLISFTPSHRCS
APVEEFSQNFTELLSCSVIQYDVDMTSFRDNKCSSWDFDKESNYESITTE
LEWVCDDAYKLAVGQSFFFIGSALGSIFFGYLADRIGRLPACVLSTLTGA
SGDFFTSFVGSLPMFSFTRFISGLSMDTQYVLMYILVFEYLSPQHRTFGL
NIILGVFYSIGLMISPWIAIWLGNWRSYLWAASLPALGMLIFPLFLHESV
EWLLTKGKFDKAVNNLKSVAKFNGRQVEDSVFDEFIKHYREKLNSAQKKS
SDTFMGMLRTPRLRKFTIILLIKSMIITIAFDILSRNVEGVGISPFKLFS
YSGFVVLPGGLSIILFQNKIGRKGMACASLLVGAFITATTGYLVGTLDPA
NYSVLLGFMVCLARFGAVVAYDAEAQYAAEIIPTSVRGRGVANIHVVGNA
FAFFSSYIIYLGTFYKPLPSLLISFLLIIGACLCLTLPETLHKQLPQTLE
EGEIFAKGEKWYFFPCFSRKRQSNKSESQLESANEITK*
BS15159.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:32:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17752-PA | 538 | CG17752-PA | 1..538 | 1..538 | 2787 | 100 | Plus |
| CG17751-PB | 533 | CG17751-PB | 1..530 | 1..537 | 2418 | 85.8 | Plus |
| CG16727-PA | 545 | CG16727-PA | 1..534 | 1..523 | 1751 | 61.9 | Plus |
| CG7333-PB | 541 | CG7333-PB | 1..540 | 1..528 | 1673 | 59.3 | Plus |
| CG6231-PF | 585 | CG6231-PF | 1..542 | 1..531 | 1310 | 45.5 | Plus |
