Clone BS15173 Report

Search the DGRC for BS15173

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:151
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG12057-RA
Protein status:BS15173.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15173.3prime Sequence

690 bp (690 high quality bases) assembled on 2006-10-23

> BS15173.3prime
ATGGTCTAGAAAGCTTCTCCTGACGACGGTAGACGCAGGCGTCGATGTTG
TTGTTCACCTCCTGGAGACCGAGCACCGCCTGCGAGGATGCGGACTGGGT
GCACACATTGCCATCGGCGAAGACGTCCGGGATGCGTTCGCTGGTCGACT
GACGGATGGTCTTGATGGAGGAGCGCGCACTGACCAAATAGACGGTGGCC
TGGACATAGAACTTGGCCAAGCAGGTCTGCTTCAGCACGGAGTTCTTGTA
CGAGTTGCATTTGTTGTAGGTGCTGGCCAGGCTGTAGCCACCGTAGACCA
GTTGCTGGGTGGCGGCACTCACATCGGAGGCAATTTCGGCGGATGTCTGG
GCGGCCACAACGCCGCAGGCGTACAGATCCTCATGGGCGGCATTCACGAT
GCGGGTGATCTCCTCATCCTCGGCGGCCACGCATTCGGGACTCTCCTCGC
GACGCGACTCCACCTGCTCGACGGCTGCCTCCAATTCGTTTTGCGGCTCC
AGGACGATCTCTTCGTACTGACTCAACAGTACCTCGCCGGTCGCCTTGCC
AATGCTGGTCATCTCATCCACCACGCTGCGCACCTGGGCGTCCAGCTGGC
TGGGCATGTCCAGCGGTTGGGCCCATCCACTGGCAACGAAAAGGGTTAGG
ATAATGGCAACGGTGTATTGCTTCATGTCGACTGATAACT

BS15173.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12057-PA 660 CG12057-RA 1..655 676..22 3250 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12057-RB 800 CG12057-RB 27..683 678..22 3270 99.8 Minus
CG12057-RA 892 CG12057-RA 27..683 678..22 3270 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9191683..9192339 678..22 3270 99.8 Minus
Blast to na_te.dros performed on 2015-02-13 12:43:33 has no hits.

BS15173.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:04 Download gff for BS15173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12057-PA 1..660 17..676 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:04 Download gff for BS15173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12057-PA 1..660 17..676 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:06 Download gff for BS15173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12057-RA 21..683 22..687 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:01 Download gff for BS15173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12057-RA 21..683 22..687 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:01 Download gff for BS15173.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9191677..9192339 22..687 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:06 Download gff for BS15173.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9085710..9086372 22..687 99   Minus

BS15173.5prime Sequence

690 bp (690 high quality bases) assembled on 2006-10-23

> BS15173.5prime
GAAGTTATCATTCGACATGAAGCAATACACCGTTGCCATTATCCTAACCC
TTTTCGTTGCCAGTGGATGGGCCCAACCGCTGGACATGCCCAGCCAGCTG
GACGCCCAGGTGCGCAGCGTGGTGGATGAGATGACCAGCATTGGCAAGGC
GACCGGCGAGGTACTGTTGAGTCAGTACGAAGAGATCGTCCTGGAGCCGC
AAAACGAATTGGAGGCAGCCGTCGAGCAGGTGGAGTCGCGTCGCGAGGAG
AGTCCCGAATGCGTGGCCGCCGAGGATGAGGAGATCACCCGCATCGTGAA
TGCCGCCCATGAGGATCTGTACGCCTGCGGCGTTGTGGCCGCCCAGACAT
CCGCCGAAATTGCCTCCGATGTGAGTGCCGCCACCCAGCAACTGGTCTAC
GGTGGCTACAGCCTGGCCAGCACCTACAACAAATGCAACTCGTACAAGAA
CTCCGTGCTGAAGCAGACCTGCTTGGCCAAGTTCTATGTCCAGGCCACCG
TCTATTTGGTCAGTGCGCGCTCCTCCATCAAGACCATCCGTCAGTCGACC
AGCGAACGCATCCCGGACGTCTTCGCCGATGGCAATGTGTGCACCCACTC
CGCATCCTCGCAGGCGGTGCTCGGTCTCCAGGAGGTGAACAACAACATCG
ACGCCTGCGTCTACCGTCGTCGCTAGAAGCTTTCTAGACC

BS15173.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12057-PA 660 CG12057-RA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12057-RB 800 CG12057-RB 27..688 15..676 3310 100 Plus
CG12057-RA 892 CG12057-RA 27..688 15..676 3310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9191683..9192344 15..676 3310 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:38:06 has no hits.

BS15173.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:05 Download gff for BS15173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12057-PA 1..660 17..676 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:06 Download gff for BS15173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12057-PA 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:02 Download gff for BS15173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12057-RA 21..688 6..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:51:54 Download gff for BS15173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12057-RA 21..688 6..676 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:51:54 Download gff for BS15173.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9191677..9192344 6..676 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:02 Download gff for BS15173.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9085710..9086377 6..676 99   Plus

BS15173.complete Sequence

692 bp assembled on 2006-11-01

GenBank Submission: FJ637884

> BS15173.complete
GAAGTTATCAGTCGACATGAAGCAATACACCGTTGCCATTATCCTAACCC
TTTTCGTTGCCAGTGGATGGGCCCAACCGCTGGACATGCCCAGCCAGCTG
GACGCCCAGGTGCGCAGCGTGGTGGATGAGATGACCAGCATTGGCAAGGC
GACCGGCGAGGTACTGTTGAGTCAGTACGAAGAGATCGTCCTGGAGCCGC
AAAACGAATTGGAGGCAGCCGTCGAGCAGGTGGAGTCGCGTCGCGAGGAG
AGTCCCGAATGCGTGGCCGCCGAGGATGAGGAGATCACCCGCATCGTGAA
TGCCGCCCATGAGGATCTGTACGCCTGCGGCGTTGTGGCCGCCCAGACAT
CCGCCGAAATTGCCTCCGATGTGAGTGCCGCCACCCAGCAACTGGTCTAC
GGTGGCTACAGCCTGGCCAGCACCTACAACAAATGCAACTCGTACAAGAA
CTCCGTGCTGAAGCAGACCTGCTTGGCCAAGTTCTATGTCCAGGCCACCG
TCTATTTGGTCAGTGCGCGCTCCTCCATCAAGACCATCCGTCAGTCGACC
AGCGAACGCATCCCGGACGTCTTCGCCGATGGCAATGTGTGCACCCACTC
CGCATCCTCGCAGGCGGTGCTCGGTCTCCAGGAGGTGAACAACAACATCG
ACGCCTGCGTCTACCGTCGTCGCTAGAAGCTTTCTAGACCAT

BS15173.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12057-RB 660 CG12057-PB 1..660 17..676 3300 100 Plus
CG12057-RA 660 CG12057-PA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12057-RB 800 CG12057-RB 27..688 15..676 3310 100 Plus
CG12057-RA 892 CG12057-RA 27..688 15..676 3310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9191683..9192344 15..676 3310 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:09:04 has no hits.

BS15173.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:02 Download gff for BS15173.complete
Subject Subject Range Query Range Percent Splice Strand
CG12057-RA 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:56 Download gff for BS15173.complete
Subject Subject Range Query Range Percent Splice Strand
CG12057-RA 5..672 6..676 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:59 Download gff for BS15173.complete
Subject Subject Range Query Range Percent Splice Strand
CG12057-RA 29..688 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:02 Download gff for BS15173.complete
Subject Subject Range Query Range Percent Splice Strand
CG12057-RA 5..672 6..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:30 Download gff for BS15173.complete
Subject Subject Range Query Range Percent Splice Strand
CG12057-RA 29..688 17..676 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:30 Download gff for BS15173.complete
Subject Subject Range Query Range Percent Splice Strand
X 9191685..9192344 17..676 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:59 Download gff for BS15173.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9085718..9086377 17..676 100   Plus

BS15173.pep Sequence

Translation from 16 to 675

> BS15173.pep
MKQYTVAIILTLFVASGWAQPLDMPSQLDAQVRSVVDEMTSIGKATGEVL
LSQYEEIVLEPQNELEAAVEQVESRREESPECVAAEDEEITRIVNAAHED
LYACGVVAAQTSAEIASDVSAATQQLVYGGYSLASTYNKCNSYKNSVLKQ
TCLAKFYVQATVYLVSARSSIKTIRQSTSERIPDVFADGNVCTHSASSQA
VLGLQEVNNNIDACVYRRR*

BS15173.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12057-PB 219 CG12057-PB 1..219 1..219 1091 100 Plus
CG12057-PA 219 CG12057-PA 1..219 1..219 1091 100 Plus
CG12115-PA 263 CG12115-PA 72..258 28..214 230 30.9 Plus