Clone Sequence Records
BS15177.complete Sequence
1010 bp assembled on 2010-02-09
GenBank Submission: KX802629
> BS15177.complete
GAAGTTATCAGTCGACATGAGTGCACCCACGGATTACCTGTTCTGCCCGC
TGGCATATGGGTCAGCTCTTTCGGCCATCGGAATCTATCTGCTCCGACAA
TATATGCAGGGAGGTCAGTTCACCACGAAAACGAATGAGACCGGCAGAGT
GGCGATTGTGACCGGCTGCAACCAGGGGATTGGCAAGGAGACCGTTCTGG
AGCTGGCCCGCAGGGGAGCTACCGTGTACATGGCTTGTCGGGACATGAAG
AAGTGCGAGAATGCCCGTCGGGAGATCATCAAAGCGACCAACAACCAGAA
CATCTTCGCACGCCAATTGGACCTGTGCTCCATGAAGTCCATTAGGAACT
TCGCTGCTGGCTTTAAGCGGGAGCAAAACAAGCTTCACATTCTTATCAAC
AACGCCGGCATTATGGACTGCCCCAAAATGCTGACGGAGGACGGATTTGA
AATGCAAATCGGAGTGAATCACATGGGCCACTTCCTCCTCACACTTCTGC
TTCTCGATGTCCTGAAGAGTTCCGCGCCCAGTCGCGTTGTGGTCCTGTCC
AGCATTGCTCACCGCTTCGGAAGGATTAAGCGTGACGACCTGAACAGCGA
AAAGTCCTATGACAGAAAGATGGCCTACTGTCAGAGCAAATTGGCCAACG
TCCTCTTCACCAGGGAGTTGGCGAAACGCCTGAGCGGAACAGGGGTCACG
GTAAATGCCCTACATCCCGGAGTAGTAAACACGGAACTGTTCCGCAATAC
ACCCTTTTTGGGTTCGTGGTTTGGAAAATTGCTCATAGCCCCTATTATAT
GGATATTCATAAAGACGGCTAGGAATGGCGCACAGACGACCCTGTACGCT
GCCCTGGATCCCAGTTTGGAAAAAGTATCTGGAAGATACTTCAGCGATTG
CAAGCAGAAGCACGTGGGCTCGGCCGCCCAGTATGACGATGATGCCCAAT
TCCTATGGGCGGAAAGTGAAAAGTGGACGGGAATTAATATATGAAAGCTT
TCTAGACCAT
BS15177.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2070-RB | 978 | CG2070-PB | 1..978 | 17..994 | 4890 | 100 | Plus |
CG2070-RA | 978 | CG2070-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
CG2065-RB | 903 | CG2065-PB | 1..637 | 104..740 | 620 | 73.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2070-RB | 1381 | CG2070-RB | 183..1160 | 17..994 | 4890 | 100 | Plus |
CG2070-RA | 1105 | CG2070-RA | 56..1033 | 17..994 | 4890 | 100 | Plus |
CG2065-RB | 1233 | CG2065-RB | 181..822 | 99..740 | 630 | 73.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7662498..7662915 | 360..777 | 2090 | 100 | Plus |
2R | 25286936 | 2R | 7662165..7662429 | 96..360 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 7662971..7663187 | 778..994 | 1085 | 100 | Plus |
2R | 25286936 | 2R | 7662037..7662116 | 17..96 | 400 | 100 | Plus |
2R | 25286936 | 2R | 7664035..7664296 | 99..360 | 350 | 75.6 | Plus |
2R | 25286936 | 2R | 7664643..7664797 | 586..740 | 235 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:04:48 has no hits.
BS15177.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:57 Download gff for
BS15177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 26..1002 | 17..993 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:39 Download gff for
BS15177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 56..1032 | 17..993 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:08 Download gff for
BS15177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 26..1002 | 17..993 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:31 Download gff for
BS15177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 56..1032 | 17..993 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:31 Download gff for
BS15177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7662037..7662116 | 17..96 | 100 | -> | Plus |
2R | 7662166..7662429 | 97..360 | 100 | -> | Plus |
2R | 7662499..7662915 | 361..777 | 100 | -> | Plus |
2R | 7662971..7663186 | 778..993 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:39 Download gff for
BS15177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3549542..3549621 | 17..96 | 100 | -> | Plus |
arm_2R | 3549671..3549934 | 97..360 | 100 | -> | Plus |
arm_2R | 3550004..3550420 | 361..777 | 100 | -> | Plus |
arm_2R | 3550476..3550691 | 778..993 | 100 | | Plus |
BS15177.3prime Sequence
809 bp (793 high quality bases) assembled on 2006-10-24
> BS15177.3prime
ATGGTCTAGAAAGCTTTCACATATTAATTCCCGTCCACTTTTCACTTTCC
GCCCATAGGAATTGGGCATCATCGTCATACTGGGCGGCCGAGCCCACGTG
CTTCTGCTTGCAATCGCTGAAGTATCTTCCAGATACTTTTTCCAAACTGG
GATCCAGGGCAGCGTACAGGGTCGTCTGTGCGCCATTCCTAGCCGTCTTT
ATGAATATCCATATAATAGGGGCTATGAGCAATTTTCCAAACCACGAACC
CAAAAAGGGTGTATTGCGGAACAGTTCCGTGTTTACTACTCCGGGATGTA
GGGCATTTACCGTGACCCCTGTTCCGCTCAGGCGTTTCGCCAACTCCCTG
GTGAAGAGGACGTTGGCCAATTTGCTCTGACAGTAGGCCATCTTTCTGTC
ATAGGACTTTTCGCTGTTCAGGTCGTCACGCTTAATCCTTCCGAAGCGGT
GAGCAATGCTGGACAGGACCACAACGCGACTGGGCGCGGAACTCTTCAGG
ACATCGAGAAGCAGAAGTGTGAGGAGGAAGTGGCCCATGTGATTCACTCC
GATTTGCATTTCAAATCCGTCCTCCGTCAGCATTTTGGGGCAGTCCATAA
TGCCGGCGTTGTTGATAAGAATGTGAAGCTTGTTTTGCTCCCGCTTAAAG
CCAGCAGCGAAGTTCCTAATGGACTTCATGGAGCACAGGTCCAATTGGCG
TGCGAAGATGTTCTGGTTGTTGGTCGCTTTGATGATCTCCCGACGGGCAT
TCTCGCACTTCTTCATGTCCCGACAAGCCATGTACACGGTAGCTCCCCTG
CGGGCCAGC
BS15177.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2070-PA | 978 | CG2070-RA | 186..974 | 809..21 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2070-RB | 1381 | CG2070-RB | 368..1160 | 809..17 | 3950 | 99.9 | Minus |
CG2070-RA | 1105 | CG2070-RA | 241..1033 | 809..17 | 3950 | 99.9 | Minus |
CG2065-RB | 1233 | CG2065-RB | 306..822 | 787..271 | 470 | 73.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7662498..7662915 | 651..234 | 2090 | 100 | Minus |
2R | 25286936 | 2R | 7662971..7663187 | 233..17 | 1070 | 99.5 | Minus |
2R | 25286936 | 2R | 7662271..7662429 | 809..651 | 795 | 100 | Minus |
2R | 25286936 | 2R | 7664643..7664797 | 425..271 | 235 | 76.8 | Minus |
2R | 25286936 | 2R | 7664160..7664296 | 787..651 | 190 | 75.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:39:08 has no hits.
BS15177.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:08 Download gff for
BS15177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-PA | 186..978 | 17..809 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:10 Download gff for
BS15177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-PA | 186..978 | 17..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:17 Download gff for
BS15177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 241..1041 | 10..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:35 Download gff for
BS15177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 241..1041 | 10..809 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:35 Download gff for
BS15177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7662271..7662429 | 651..809 | 100 | -> | Minus |
2R | 7662499..7662915 | 234..650 | 100 | -> | Minus |
2R | 7662971..7663195 | 10..233 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:17 Download gff for
BS15177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3549776..3549934 | 651..809 | 100 | -> | Minus |
arm_2R | 3550004..3550420 | 234..650 | 100 | -> | Minus |
arm_2R | 3550476..3550700 | 10..233 | 98 | | Minus |
BS15177.5prime Sequence
864 bp (771 high quality bases) assembled on 2006-10-23
> BS15177.5prime
GAAGTTATCAGTCGACATGAGTGCACCCACGGATTACCTGTTCTGCCCGC
TGGCATATGGGTCAGCTCTTTCGGCCATCGGAATCTATCTGCTCCGACAA
TATATGCAGGGAGGTCAGTTCACCACGAAAACGAATGAGACCGGCAGAGT
GGCGATTGTGACCGGCTGCAACCAGGGGATTGGCAAGGAGACCGTTCTGG
AGCTGGCCCGCAGGGGAGCTACCGTGTACATGGCTTGTCGGGACATGAAG
AAGTGCGAGAATGCCCGTCGGGAGATCATCAAAGCGACCAACAACCAGAA
CATCTTCGCACGCCAATTGGACCTGTGCTCCATGAAGTCCATTAGGAACT
TCGCTGCTGGCTTTAAGCGGGAGCAAAACAAGCTTCACATTCTTATCAAC
AACGCCGGCATTATGGACTGCCCCAAAATGCTGACGGAGGACGGATTTGA
AATGCAAATCGGAGTGAATCACATGGGCCACTTCCTCCTCACACTTCTGC
TTCTCGATGTCCTGAAGAGTTCCGCGCCCAGTCGCGTTGTGGTCCTGTCC
AGCATTGCTCACCGCTTCGGAAGGATTAAGCGTGACGACCTGAACAGCGA
AAAGTCCTATGACAGAAAGATGGCCTACTGTCAGAGCAAATTGGCCAACG
TCCTCTTCACCAGGGAGTTGGCGAAACGCCTGAGCGGAACAGGGGTCACG
GTAAATGCCCTACATCCCGGAGTAGTAAACACGGAACTGTTCCGCAATAC
ACCCTTTTTGGGTTCGTGGTTTGGAAAATGCTCATAGCCCCTATTATATG
GATATTCATAAAGACGGCTAGGAATGGCGCACAGACGACCCTGTACGCTG
CCCTGGATCCCAGT
BS15177.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2070-PA | 978 | CG2070-RA | 1..763 | 17..779 | 3815 | 100 | Plus |
CG2070-PA | 978 | CG2070-RA | 764..849 | 779..864 | 430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2070-RB | 1381 | CG2070-RB | 183..1031 | 17..864 | 4220 | 99.9 | Plus |
CG2070-RA | 1105 | CG2070-RA | 56..904 | 17..864 | 4220 | 99.9 | Plus |
CG2065-RB | 1233 | CG2065-RB | 181..822 | 99..740 | 630 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7662498..7662915 | 360..777 | 2090 | 100 | Plus |
2R | 25286936 | 2R | 7662165..7662429 | 96..360 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 7662973..7663058 | 779..864 | 430 | 100 | Plus |
2R | 25286936 | 2R | 7662037..7662116 | 17..96 | 400 | 100 | Plus |
2R | 25286936 | 2R | 7664035..7664296 | 99..360 | 350 | 75.6 | Plus |
2R | 25286936 | 2R | 7664643..7664797 | 586..740 | 235 | 76.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:16:12 has no hits.
BS15177.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:09 Download gff for
BS15177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-PA | 1..849 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:12 Download gff for
BS15177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-PA | 1..849 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:20:30 Download gff for
BS15177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 56..904 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:18 Download gff for
BS15177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 56..904 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:18 Download gff for
BS15177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7662166..7662429 | 97..360 | 100 | -> | Plus |
2R | 7662037..7662116 | 17..96 | 100 | -> | Plus |
2R | 7662499..7662915 | 361..777 | 100 | -> | Plus |
2R | 7662971..7663058 | 778..864 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:20:30 Download gff for
BS15177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3549542..3549621 | 17..96 | 100 | -> | Plus |
arm_2R | 3549671..3549934 | 97..360 | 100 | -> | Plus |
arm_2R | 3550004..3550420 | 361..777 | 100 | -> | Plus |
arm_2R | 3550476..3550563 | 778..864 | 98 | | Plus |
BS15177.pep Sequence
Translation from 16 to 993
> BS15177.pep
MSAPTDYLFCPLAYGSALSAIGIYLLRQYMQGGQFTTKTNETGRVAIVTG
CNQGIGKETVLELARRGATVYMACRDMKKCENARREIIKATNNQNIFARQ
LDLCSMKSIRNFAAGFKREQNKLHILINNAGIMDCPKMLTEDGFEMQIGV
NHMGHFLLTLLLLDVLKSSAPSRVVVLSSIAHRFGRIKRDDLNSEKSYDR
KMAYCQSKLANVLFTRELAKRLSGTGVTVNALHPGVVNTELFRNTPFLGS
WFGKLLIAPIIWIFIKTARNGAQTTLYAALDPSLEKVSGRYFSDCKQKHV
GSAAQYDDDAQFLWAESEKWTGINI*
BS15177.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2070-PB | 325 | CG2070-PB | 1..325 | 1..325 | 1686 | 100 | Plus |
CG2070-PA | 325 | CG2070-PA | 1..325 | 1..325 | 1686 | 100 | Plus |
CG2064-PA | 330 | CG2064-PA | 6..324 | 6..324 | 1106 | 66.5 | Plus |
CG2065-PB | 300 | CG2065-PB | 1..295 | 30..324 | 1105 | 71.2 | Plus |
CG2065-PA | 300 | CG2065-PA | 1..295 | 30..324 | 1105 | 71.2 | Plus |