Clone Sequence Records
BS15178.complete Sequence
1544 bp assembled on 2009-12-07
GenBank Submission: KX800633
> BS15178.complete
GAAGTTATCAGTCGACATGTGGCTCCTACTATCGCTAGTCCTGCTCCTGG
CGATCATCGCCCTGGAGATGCGACGGTTTCTGCGGAACATGAGGACGATA
CCAGGTCCACTGCCTCTGCCCCTGCTCGGCAACGCCCACATCTTTCTGGG
GCTCACTCCGGCTGAGGCGTGCCTCAAGATAGGCGAGCTGGCGGAGCGGC
ACGGCGACACCTTCGGACTGTTCCTGGGCCCGTCATACAGCGTGATGCTC
TTCAATCCGCGCGACGTAGAGCGGGTGCTGGGCAGCAGCCAGCTGCTGAC
CAAGTCGCAGGAGTACTCCTTCCTGGGCCGCTGGCTCAACGAGGGACTGC
TGGTGAGCAACGGACGCAAGTGGCACCGCCGGCGCAAGATCATCACGCCG
GCCTTCCACTTTCGCATCCTGGAGCCATACGTGGAGATCTTCGACAGGCA
GTCACTGCGGCTCGTCGAGGAACTGGCGCTGCGGATAAGCAGGGGCCAGG
AGAGAATCAACCTGGGCGAGGCCATTCACCTCTGCGCGCTGGACGCCATT
TGCGAAACTGCCATGGGTGTTTCCATCAATGCGCAGTCGAATGCAGACTC
CGAGTACGTCCAGGCGGTGAAGACCATATCAATGGTGCTGCACAAGCGGA
TGTTCAACATTCTGTACCGCTTCGACCTTACCTACATGCTGACCCCACTG
GCGAGGGCGGAGAAGAAGGCCCTGAACGTGCTTCACCAGTTCACAGAGAA
GATCATCGTGCAGCGCAGGGAGGAGCTCATCCGCGAAGGAAGCAGCCAGG
AGAGCAGCAATGATGACGCGGACGTGGGCGCCAAGCGAAAGATGGCCTTC
CTGGACATCCTTCTGCAGTCGACCGTCGACGAACGGCCCCTGAGCAACTT
GGACATTCGCGAGGAAGTGGACACCTTCATGTTCGAGGGCCACGACACCA
CCTCTTCGGCCCTGATGTTCTTCTTCTACAACATAGCCACCCACCCGGAG
GCGCAGAAGAAGTGCTTTGAGGAGATCCGGTCCGTGGTGGGCAATGACAA
GAGCACGCCGGTGAGCTATGAGCTGCTGAACCAGCTGCACTACGTCGACC
TGTGCGTGAAGGAGACCCTTCGAATGTATCCGTCTGTACCGCTGCTGGGT
CGTAAGGTTCTCGAGGACTGCGAGATCAATGGAAAGCTCATCCCGGCGGG
CACGAATATCGGCATCTCCCCTCTCTACTTGGGCAGACGGGAGGAGCTCT
TTAGCGAGCCCAATATCTTCAAGCCGGAACGGTTCGATGTGGTCACCACC
GCCGAGAAGCTGAATCCGTACGCGTACATTCCGTTCTCGGCCGGACCTCG
CAACTGCATTGGCCAGAAGTTCGCCATGCTGGAGATCAAGGCCATCGTGG
CCAATGTGCTCCGGCACTACGAGGTTGACTTTGTGGGCGACTCCTCGGAA
CCACCCGTGCTGATCGCCGAACTTATTCTGCGTACCAAGGAACCCTTGAT
GTTCAAGGTGCGGGAGCGAGTCTACTGAAAGCTTTCTAGACCAT
BS15178.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d1-RB | 1512 | CG3656-PB | 1..1512 | 17..1528 | 7560 | 100 | Plus |
| Cyp4d1-RA | 1539 | CG3656-PA | 541..1539 | 530..1528 | 4905 | 99.4 | Plus |
| Cyp4c3-RA | 1608 | CG1438-PA | 990..1050 | 901..961 | 245 | 93.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d1-RB | 1644 | CG3656-RB | 59..1575 | 13..1529 | 7570 | 99.9 | Plus |
| Cyp4d1-RA | 1685 | CG3656-RA | 617..1616 | 530..1529 | 4910 | 99.4 | Plus |
| Cyp4c3-RA | 1906 | CG1438-RA | 1123..1183 | 901..961 | 245 | 93.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2159625..2160249 | 1178..554 | 3125 | 100 | Minus |
| X | 23542271 | X | 2161581..2162122 | 554..13 | 2695 | 99.8 | Minus |
| X | 23542271 | X | 2159214..2159564 | 1529..1179 | 1755 | 100 | Minus |
| 3R | 32079331 | 3R | 30899848..30899908 | 901..961 | 245 | 93.4 | Plus |
| X | 23542271 | X | 2178466..2178575 | 1314..1423 | 235 | 80.9 | Plus |
| X | 23542271 | X | 15115065..15115121 | 961..905 | 225 | 93 | Minus |
| 3L | 28110227 | 3L | 2476973..2477085 | 952..840 | 220 | 79.6 | Minus |
| 3L | 28110227 | 3L | 7494254..7494386 | 952..820 | 215 | 77.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:59:45 has no hits.
BS15178.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:09 Download gff for
BS15178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d1-RB | 10..1520 | 17..1527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:12 Download gff for
BS15178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d1-RB | 63..1573 | 17..1527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:29 Download gff for
BS15178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d1-RB | 10..1520 | 17..1527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:30 Download gff for
BS15178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d1-RB | 63..1573 | 17..1527 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:30 Download gff for
BS15178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2159216..2159564 | 1179..1527 | 100 | <- | Minus |
| X | 2159625..2160248 | 555..1178 | 100 | <- | Minus |
| X | 2161581..2162118 | 17..554 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:12 Download gff for
BS15178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2053249..2053597 | 1179..1527 | 100 | <- | Minus |
| arm_X | 2053658..2054281 | 555..1178 | 100 | <- | Minus |
| arm_X | 2055614..2056151 | 17..554 | 100 | | Minus |
BS15178.3prime Sequence
806 bp (793 high quality bases) assembled on 2006-10-24
> BS15178.3prime
ATGGTCTAGAAAGCTTTCACCTGACTCGCTCCCGCACCTTGAACATCAAG
GGTTCCTTGGTACGCAGAATAAGTTCGGCGATCAGCACGGGTGGTTCCGA
GGAGTCGCCCACAAAGTCAACCTCGTAGTGCCGGAGCACATTGGCCACGA
TGGCCTTGATCTCCAGCATGGCGAACTTCTGGCCAATGCAGTTGCGAGGT
CCGGCCGAGAACGGAATGTACGCGTACGGATTCAGCTTCTCGGCGGTGGT
GACCACATCGAACCGTTCCGGCTTGAAGATATTGGGCTCGCTAAAGAGCT
CCTCCCGTCTGCCCAAGTAGAGAGGGGAGATGCCGATATTCGTGCCCGCC
GGGATGAGCTTTCCATTGATCTCGCAGTCCTCGAGAACCTTACGACCCAG
CAGCGGTACAGACGGATACATTCGAAGGGTCTCCTTCACGCACAGGTCGA
CGTAGTGCAGCTGGTTCAGCAGCTCATAGCTCACCGGCGTGCTCTTGTCA
TTGCCCACCACGGACCGGATCTCCTCAAAGCACTTCTTCTGCGCCTCCGG
GTGGGTGGCTATGTTGTAGAAGAAGAACATCAGGGCCGAAGAGGTGGTGT
CGTGGCCCTCGAACATGAAGGTGTCCACTTCCTCGCGAATGTCCAAGTTG
CTCAGGGGCCGTTCGTCGACGGTCGACTGCAGAAGGATGTCCAGGAAGGC
CATCTTTCGCTTGGCGCCCACGTCCGCGTCATCATTGCTGCTCTCCTGGC
TGCTTCCTTCGCGGATGAGCTCCTCCCTGCGCTGCACGATGATCTTCTCT
GTGAAC
BS15178.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3656-PB | 1512 | Cyp4d1-RB | 723..1506 | 806..23 | 3920 | 100 | Minus |
| CG3656-PA | 1539 | Cyp4d1-RA | 750..1533 | 806..23 | 3920 | 100 | Minus |
| CG1438-PA | 1608 | Cyp4c3-RA | 990..1050 | 644..584 | 205 | 93.4 | Minus |
| CG9081-PA | 1488 | Cyp4s3-RA | 889..936 | 640..593 | 190 | 95.8 | Minus |
| CG1438-PA | 1608 | Cyp4c3-RA | 1438..1470 | 193..161 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:51:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d1-RA | 1685 | CG3656-RA | 826..1609 | 806..23 | 3920 | 100 | Minus |
| Cyp4d1-RB | 1644 | CG3656-RB | 785..1568 | 806..23 | 3920 | 100 | Minus |
| Cyp4c3-RA | 1906 | CG1438-RA | 1123..1183 | 644..584 | 245 | 93.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2159625..2160064 | 367..806 | 2200 | 100 | Plus |
| X | 23542271 | X | 2159221..2159564 | 23..366 | 1720 | 100 | Plus |
| 3R | 32079331 | 3R | 30899848..30899908 | 644..584 | 245 | 93.4 | Minus |
| X | 23542271 | X | 2178466..2178575 | 231..122 | 235 | 80.9 | Minus |
| X | 23542271 | X | 15115065..15115121 | 584..640 | 225 | 93 | Plus |
| 3L | 28110227 | 3L | 2476973..2477085 | 593..705 | 220 | 79.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:51:42 has no hits.
BS15178.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:10 Download gff for
BS15178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3656-PB | 723..1512 | 17..806 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:13 Download gff for
BS15178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3656-PA | 750..1539 | 17..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:49 Download gff for
BS15178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d1-RB | 785..1575 | 16..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:05 Download gff for
BS15178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d1-RB | 785..1575 | 16..806 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:05 Download gff for
BS15178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2159214..2159564 | 16..366 | 99 | <- | Plus |
| X | 2159625..2160064 | 367..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:49 Download gff for
BS15178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2053247..2053597 | 16..366 | 99 | <- | Plus |
| arm_X | 2053658..2054097 | 367..806 | 100 | | Plus |
BS15178.5prime Sequence
878 bp (786 high quality bases) assembled on 2006-10-23
> BS15178.5prime
GAAGTTATCCTTCGACATGTGGCTCCTACTATCGCTAGTCCTGCTCCTGG
CGATCATCGCCCTGGAGATGCGACGGTTTCTGCGGAACATGAGGACGATA
CCAGGTCCACTGCCTCTGCCCCTGCTCGGCAACGCCCACATCTTTCTGGG
GCTCACTCCGGCTGAGGCGTGCCTCAAGATAGGCGAGCTGGCGGAGCGGC
ACGGCGACACCTTCGGACTGTTCCTGGGCCCGTCATACAGCGTGATGCTC
TTCAATCCGCGCGACGTAGAGCGGGTGCTGGGCAGCAGCCAGCTGCTGAC
CAAGTCGCAGGAGTACTCCTTCCTGGGCCGCTGGCTCAACGAGGGACTGC
TGGTGAGCAACGGACGCAAGTGGCACCGCCGGCGCAAGATCATCACGCCG
GCCTTCCACTTTCGCATCCTGGAGCCATACGTGGAGATCTTCGACAGGCA
GTCACTGCGGCTCGTCGAGGAACTGGCGCTGCGGATAAGCAGGGGCCAGG
AGAGAATCAACCTGGGCGAGGCCATTCACCTCTGCGCGCTGGACGCCATT
TGCGAAACTGCCATGGGTGTTTCCATCAATGCGCAGTCGAATGCAGACTC
CGAGTACGTCCAGGCGGTGAAGACCATATCAATGGTGCTGCACAAGCGGA
TGTTCAACATTCTGTACCGCTTCGACCTTACCTACATGCTGACCCCACTG
GCGAGGGCGGAGAAGAAGGCCCTGAACGTGCTTCACCAGTTCACAGAGAA
GATCATCGTGCAGCGCAGGGAGGAGCTCATCCGCGAAGGAAGCAGCCAGG
AGAGCAGCAATGATGACGCGGACGTGGGCGCCAAGCGAAAGATGGCCTTC
CTGGACATCCTTCTGCAGTCGAACGTCG
BS15178.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3656-PB | 1512 | Cyp4d1-RB | 1..862 | 17..878 | 4285 | 99.8 | Plus |
| CG3656-PA | 1539 | Cyp4d1-RA | 562..889 | 551..878 | 1615 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d1-RB | 1644 | CG3656-RB | 59..924 | 13..878 | 4300 | 99.8 | Plus |
| Cyp4d1-RA | 1685 | CG3656-RA | 617..965 | 530..878 | 1640 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2161581..2162122 | 554..13 | 2695 | 99.8 | Minus |
| X | 23542271 | X | 2159925..2160249 | 878..554 | 1610 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:38:20 has no hits.
BS15178.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:12 Download gff for
BS15178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3656-PB | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:15 Download gff for
BS15178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3656-PB | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:06 Download gff for
BS15178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d1-RB | 59..924 | 13..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:53:18 Download gff for
BS15178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d1-RB | 59..924 | 13..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:53:18 Download gff for
BS15178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2159925..2160248 | 555..878 | 99 | <- | Minus |
| X | 2161581..2162122 | 13..554 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:06 Download gff for
BS15178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2053958..2054281 | 555..878 | 99 | <- | Minus |
| arm_X | 2055614..2056155 | 13..554 | 99 | | Minus |
BS15178.pep Sequence
Translation from 16 to 1527
> BS15178.pep
MWLLLSLVLLLAIIALEMRRFLRNMRTIPGPLPLPLLGNAHIFLGLTPAE
ACLKIGELAERHGDTFGLFLGPSYSVMLFNPRDVERVLGSSQLLTKSQEY
SFLGRWLNEGLLVSNGRKWHRRRKIITPAFHFRILEPYVEIFDRQSLRLV
EELALRISRGQERINLGEAIHLCALDAICETAMGVSINAQSNADSEYVQA
VKTISMVLHKRMFNILYRFDLTYMLTPLARAEKKALNVLHQFTEKIIVQR
REELIREGSSQESSNDDADVGAKRKMAFLDILLQSTVDERPLSNLDIREE
VDTFMFEGHDTTSSALMFFFYNIATHPEAQKKCFEEIRSVVGNDKSTPVS
YELLNQLHYVDLCVKETLRMYPSVPLLGRKVLEDCEINGKLIPAGTNIGI
SPLYLGRREELFSEPNIFKPERFDVVTTAEKLNPYAYIPFSAGPRNCIGQ
KFAMLEIKAIVANVLRHYEVDFVGDSSEPPVLIAELILRTKEPLMFKVRE
RVY*
BS15178.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:02:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d1-PB | 503 | CG3656-PB | 1..503 | 1..503 | 2570 | 100 | Plus |
| Cyp4d1-PA | 512 | CG3656-PA | 1..512 | 1..503 | 2014 | 78.5 | Plus |
| Cyp4d2-PB | 501 | CG3466-PB | 4..472 | 4..470 | 1083 | 47.9 | Plus |
| Cyp4d2-PA | 501 | CG3466-PA | 4..472 | 4..470 | 1083 | 47.9 | Plus |
| Cyp4c3-PA | 535 | CG1438-PA | 31..534 | 1..501 | 1025 | 42 | Plus |
