Clone Sequence Records
BS15183.3prime Sequence
447 bp (447 high quality bases) assembled on 2006-10-24
> BS15183.3prime
ATGGTCTAGAAAGCTTTCACTTTTTGGGTTCTGTGTTAGCTGGAAACCAG
CTAGTTAATATGCTTGCAAGACTTGCACCGAGTTCGGTAAAGAATCCAGG
TGCCACGCTCTTTGCCGCCGGAGACAGAATCTTCTTAAAGATCCTTCTAG
CACCACCTTGACTGGGTACTCCATCGACCATGATTTCTCCCGTATATCCA
CTTATGAATCTGTCCATTCTCGCCCTTTCATCTGGTCTTAAGCTAGGAGC
CATGCGATTGTATATGGTAAGTAGTTCCTGGATTCTTTTGATTTTGGTAT
TGTCGTCCCAGGAGGTTCGCATAATTTCAGCAACCCTACGACTGTCACGT
TGACGTTCTTGATTGGAATAGGCCGAGCATAGAGTTCCAATCAGTAGCAG
TGCGAAACAGATCAAAGACGTTTTAAAATTCATGTCGACTGATAACT
BS15183.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5609-PA | 417 | TotB-RA | 1..406 | 433..28 | 2005 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotB-RA | 526 | CG5609-RA | 41..446 | 433..28 | 2015 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20874060..20874442 | 410..28 | 1900 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-13 05:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 5117..5186 | 325..256 | 143 | 67.1 | Minus |
BS15183.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:19 Download gff for
BS15183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-PA | 1..410 | 23..433 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:25 Download gff for
BS15183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5609-PA | 1..410 | 23..433 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:47 Download gff for
BS15183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 41..450 | 23..433 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:09:00 Download gff for
BS15183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 41..450 | 23..433 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:00 Download gff for
BS15183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20873978..20874000 | 411..433 | 100 | -> | Minus |
3R | 20874060..20874457 | 14..410 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:47 Download gff for
BS15183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16699700..16699722 | 411..433 | 100 | -> | Minus |
arm_3R | 16699782..16700179 | 14..410 | 97 | -> | Minus |
BS15183.5prime Sequence
447 bp (447 high quality bases) assembled on 2006-10-23
> BS15183.5prime
GAAGTTATCCTTCGAGATGAATTTTAAAACGTCTTTGATCTGTTTCGCAC
TGCTACTGATTGGAACTCTATGCTCGGCCTATTCCAATCAAGAACGTCAA
CGTGACAGTCGTAGGGTTGCTGAAATTATGCGAACCTCCTGGGACGACAA
TACCAAAATCAAAAGAATCCAGGAACTACTTACCATATACAATCGCATGG
CTCCTAGCTTAAGACCAGATGAAAGGGCGAGAATGGACAGATTCATAAGT
GGATATACGGGAGAAATCATGGTCGATGGAGTACCCAGTCAAGGTGGTGC
TAGAAGGATCTTTAAGAAGATTCTGTCTCCGGCGGCAAAGAGCGTGGCAA
CTGGATTCTTTACCGAACTCGGTGCAAGTCTTGCAAGCATATTAACTAGC
TGGTTTCCAGCTAACACAGAACGAAACCATTGAAAGCTTTCTAGACC
BS15183.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5609-PA | 417 | TotB-RA | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:50:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotB-RA | 526 | CG5609-RA | 41..459 | 17..435 | 2095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20874060..20874455 | 40..435 | 1980 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 05:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 5117..5186 | 125..194 | 143 | 67.1 | Plus |
BS15183.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:20 Download gff for
BS15183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-PA | 1..417 | 17..433 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:26 Download gff for
BS15183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5609-PA | 1..417 | 17..433 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:36 Download gff for
BS15183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 31..459 | 8..435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:56 Download gff for
BS15183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 31..459 | 8..435 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:56 Download gff for
BS15183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20874060..20874455 | 40..435 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:36 Download gff for
BS15183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16699782..16700177 | 40..435 | 100 | | Plus |
BS15183.complete Sequence
449 bp assembled on 2006-11-01
GenBank Submission: FJ637885
> BS15183.complete
GAAGTTATCAGTCGACATGAATTTTAAAACGTCTTTGATCTGTTTCGCAC
TGCTACTGATTGGAACTCTATGCTCGGCCTATTCCAATCAAGAACGTCAA
CGTGACAGTCGTAGGGTTGCTGAAATTATGCGAACCTCCTGGGACGACAA
TACCAAAATCAAAAGAATCCAGGAACTACTTACCATATACAATCGCATGG
CTCCTAGCTTAAGACCAGATGAAAGGGCGAGAATGGACAGATTCATAAGT
GGATATACGGGAGAAATCATGGTCGATGGAGTACCCAGTCAAGGTGGTGC
TAGAAGGATCTTTAAGAAGATTCTGTCTCCGGCGGCAAAGAGCGTGGCAA
CTGGATTCTTTACCGAACTCGGTGCAAGTCTTGCAAGCATATTAACTAGC
TGGTTTCCAGCTAACACAGAACGAAACCATTGAAAGCTTTCTAGACCAT
BS15183.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotB-RA | 417 | CG5609-PA | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotB-RA | 526 | CG5609-RA | 41..459 | 17..435 | 2095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20874060..20874455 | 40..435 | 1980 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 5117..5186 | 125..194 | 143 | 67.1 | Plus |
BS15183.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:44 Download gff for
BS15183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 1..417 | 17..433 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:19 Download gff for
BS15183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 29..447 | 17..435 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:56 Download gff for
BS15183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 41..456 | 17..432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:44 Download gff for
BS15183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 29..447 | 17..435 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:51 Download gff for
BS15183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 41..456 | 17..432 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:51 Download gff for
BS15183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20873978..20874000 | 17..39 | 100 | -> | Plus |
3R | 20874060..20874452 | 40..432 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:56 Download gff for
BS15183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16699700..16699722 | 17..39 | 100 | -> | Plus |
arm_3R | 16699782..16700174 | 40..432 | 100 | | Plus |
BS15183.pep Sequence
Translation from 16 to 432
> BS15183.pep
MNFKTSLICFALLLIGTLCSAYSNQERQRDSRRVAEIMRTSWDDNTKIKR
IQELLTIYNRMAPSLRPDERARMDRFISGYTGEIMVDGVPSQGGARRIFK
KILSPAAKSVATGFFTELGASLASILTSWFPANTERNH*
BS15183.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotB-PA | 138 | CG5609-PA | 1..138 | 1..138 | 704 | 100 | Plus |
TotA-PA | 129 | CG31509-PA | 1..128 | 1..127 | 348 | 52.3 | Plus |
TotC-PA | 129 | CG31508-PA | 1..128 | 1..127 | 336 | 53.1 | Plus |