Clone BS15183 Report

Search the DGRC for BS15183

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:151
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptTotB-RA
Protein status:BS15183.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15183.3prime Sequence

447 bp (447 high quality bases) assembled on 2006-10-24

> BS15183.3prime
ATGGTCTAGAAAGCTTTCACTTTTTGGGTTCTGTGTTAGCTGGAAACCAG
CTAGTTAATATGCTTGCAAGACTTGCACCGAGTTCGGTAAAGAATCCAGG
TGCCACGCTCTTTGCCGCCGGAGACAGAATCTTCTTAAAGATCCTTCTAG
CACCACCTTGACTGGGTACTCCATCGACCATGATTTCTCCCGTATATCCA
CTTATGAATCTGTCCATTCTCGCCCTTTCATCTGGTCTTAAGCTAGGAGC
CATGCGATTGTATATGGTAAGTAGTTCCTGGATTCTTTTGATTTTGGTAT
TGTCGTCCCAGGAGGTTCGCATAATTTCAGCAACCCTACGACTGTCACGT
TGACGTTCTTGATTGGAATAGGCCGAGCATAGAGTTCCAATCAGTAGCAG
TGCGAAACAGATCAAAGACGTTTTAAAATTCATGTCGACTGATAACT

BS15183.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5609-PA 417 TotB-RA 1..406 433..28 2005 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
TotB-RA 526 CG5609-RA 41..446 433..28 2015 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20874060..20874442 410..28 1900 99.7 Minus
Blast to na_te.dros performed 2015-02-13 05:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 5117..5186 325..256 143 67.1 Minus

BS15183.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:19 Download gff for BS15183.3prime
Subject Subject Range Query Range Percent Splice Strand
TotB-PA 1..410 23..433 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:25 Download gff for BS15183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5609-PA 1..410 23..433 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:47 Download gff for BS15183.3prime
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 41..450 23..433 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:09:00 Download gff for BS15183.3prime
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 41..450 23..433 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:00 Download gff for BS15183.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20873978..20874000 411..433 100 -> Minus
3R 20874060..20874457 14..410 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:47 Download gff for BS15183.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16699700..16699722 411..433 100 -> Minus
arm_3R 16699782..16700179 14..410 97 -> Minus

BS15183.5prime Sequence

447 bp (447 high quality bases) assembled on 2006-10-23

> BS15183.5prime
GAAGTTATCCTTCGAGATGAATTTTAAAACGTCTTTGATCTGTTTCGCAC
TGCTACTGATTGGAACTCTATGCTCGGCCTATTCCAATCAAGAACGTCAA
CGTGACAGTCGTAGGGTTGCTGAAATTATGCGAACCTCCTGGGACGACAA
TACCAAAATCAAAAGAATCCAGGAACTACTTACCATATACAATCGCATGG
CTCCTAGCTTAAGACCAGATGAAAGGGCGAGAATGGACAGATTCATAAGT
GGATATACGGGAGAAATCATGGTCGATGGAGTACCCAGTCAAGGTGGTGC
TAGAAGGATCTTTAAGAAGATTCTGTCTCCGGCGGCAAAGAGCGTGGCAA
CTGGATTCTTTACCGAACTCGGTGCAAGTCTTGCAAGCATATTAACTAGC
TGGTTTCCAGCTAACACAGAACGAAACCATTGAAAGCTTTCTAGACC

BS15183.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5609-PA 417 TotB-RA 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
TotB-RA 526 CG5609-RA 41..459 17..435 2095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20874060..20874455 40..435 1980 100 Plus
Blast to na_te.dros performed 2015-02-13 05:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 5117..5186 125..194 143 67.1 Plus

BS15183.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:20 Download gff for BS15183.5prime
Subject Subject Range Query Range Percent Splice Strand
TotB-PA 1..417 17..433 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:26 Download gff for BS15183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5609-PA 1..417 17..433 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:36 Download gff for BS15183.5prime
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 31..459 8..435 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:56 Download gff for BS15183.5prime
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 31..459 8..435 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:56 Download gff for BS15183.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20874060..20874455 40..435 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:36 Download gff for BS15183.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16699782..16700177 40..435 100   Plus

BS15183.complete Sequence

449 bp assembled on 2006-11-01

GenBank Submission: FJ637885

> BS15183.complete
GAAGTTATCAGTCGACATGAATTTTAAAACGTCTTTGATCTGTTTCGCAC
TGCTACTGATTGGAACTCTATGCTCGGCCTATTCCAATCAAGAACGTCAA
CGTGACAGTCGTAGGGTTGCTGAAATTATGCGAACCTCCTGGGACGACAA
TACCAAAATCAAAAGAATCCAGGAACTACTTACCATATACAATCGCATGG
CTCCTAGCTTAAGACCAGATGAAAGGGCGAGAATGGACAGATTCATAAGT
GGATATACGGGAGAAATCATGGTCGATGGAGTACCCAGTCAAGGTGGTGC
TAGAAGGATCTTTAAGAAGATTCTGTCTCCGGCGGCAAAGAGCGTGGCAA
CTGGATTCTTTACCGAACTCGGTGCAAGTCTTGCAAGCATATTAACTAGC
TGGTTTCCAGCTAACACAGAACGAAACCATTGAAAGCTTTCTAGACCAT

BS15183.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
TotB-RA 417 CG5609-PA 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
TotB-RA 526 CG5609-RA 41..459 17..435 2095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20874060..20874455 40..435 1980 100 Plus
Blast to na_te.dros performed 2014-11-27 16:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 5117..5186 125..194 143 67.1 Plus

BS15183.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:44 Download gff for BS15183.complete
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 1..417 17..433 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:19 Download gff for BS15183.complete
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 29..447 17..435 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:56 Download gff for BS15183.complete
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 41..456 17..432 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:44 Download gff for BS15183.complete
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 29..447 17..435 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:51 Download gff for BS15183.complete
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 41..456 17..432 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:51 Download gff for BS15183.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20873978..20874000 17..39 100 -> Plus
3R 20874060..20874452 40..432 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:56 Download gff for BS15183.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16699700..16699722 17..39 100 -> Plus
arm_3R 16699782..16700174 40..432 100   Plus

BS15183.pep Sequence

Translation from 16 to 432

> BS15183.pep
MNFKTSLICFALLLIGTLCSAYSNQERQRDSRRVAEIMRTSWDDNTKIKR
IQELLTIYNRMAPSLRPDERARMDRFISGYTGEIMVDGVPSQGGARRIFK
KILSPAAKSVATGFFTELGASLASILTSWFPANTERNH*

BS15183.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
TotB-PA 138 CG5609-PA 1..138 1..138 704 100 Plus
TotA-PA 129 CG31509-PA 1..128 1..127 348 52.3 Plus
TotC-PA 129 CG31508-PA 1..128 1..127 336 53.1 Plus