Clone BS15195 Report

Search the DGRC for BS15195

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:151
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG17819-RA
Protein status:BS15195.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15195.3prime Sequence

591 bp (591 high quality bases) assembled on 2006-10-24

> BS15195.3prime
ATGGTCTAGAAAGCTTTCACTTCCTGTTATTGTTGATCTTTTCGTTAATC
CAATTTACGATCTCCTGAACACCAGACCCTGTCCGCATGGAACATTCCTC
AAAAGTCCAATCTCGACCAGTTAGGCGATATAGGCCCATCAAATCGATAA
CCGTGGACATGGACAGGGATCCCGAGGCGTCCTTCTTGTTGGACACGATC
AGCAGCGGAGCATTATCCAGTTCCTGGTGCATCAAAACATCGCATAAAAC
ACATCGCGCCTCGCTTAGCCGCAGTGCATCCGTGCTATCCAGTACAAAAA
TCAAAACATTCACTTTCTTATAATACTTTGGCCAGATCTGGCGATTCTTC
AGTTCTCCGTTAATATCCCACAACTGGACTCTGAAATTATTTATGGTGAA
GCTCCATTCACTAACTTGATTGTTAGATTCCTTGGATTCTCCATTGAAAA
TTTCCGCCAGGCGGTCTGTCAACGTGGATTTTCCCGCATTGTCTAATCCT
AAAATGAGCAGACATGATTTCTGAGAGCCTGCGGGCAGGATCTTTTTTAT
GAACGAAACAGGTCCGTAAAAACACATGTCGACTGATAACT

BS15195.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17819-PA 561 CG17819-RA 1..561 577..17 2805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17819-RA 646 CG17819-RA 15..576 578..17 2810 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21884902..21885140 64..302 1195 100 Plus
3R 32079331 3R 21885395..21885536 437..578 710 100 Plus
3R 32079331 3R 21885198..21885332 302..436 675 100 Plus
3R 32079331 3R 21884798..21884847 17..66 250 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:33:25 has no hits.

BS15195.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:39 Download gff for BS15195.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17819-PA 1..561 17..577 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:51 Download gff for BS15195.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17819-PA 1..561 17..577 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:54:21 Download gff for BS15195.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17819-RA 11..579 10..582 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:24 Download gff for BS15195.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17819-RA 11..579 10..582 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:24 Download gff for BS15195.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21885395..21885540 437..582 98   Plus
3R 21884795..21884845 10..64 92 <- Plus
3R 21884903..21885139 65..301 100 <- Plus
3R 21885198..21885332 302..436 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:54:21 Download gff for BS15195.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17710517..17710567 10..64 92 <- Plus
arm_3R 17710625..17710861 65..301 100 <- Plus
arm_3R 17710920..17711054 302..436 100 <- Plus
arm_3R 17711117..17711262 437..582 98   Plus

BS15195.5prime Sequence

591 bp (591 high quality bases) assembled on 2006-10-23

> BS15195.5prime
GAAGTTATCATTCGACATGTGTTTTTACGGACCTGTTTCGTTCATAAAAA
AGATCCTGCCCGCAGGCTCTCAGAAATCATGTCTGCTCATTTTAGGATTA
GACAATGCGGGAAAATCCACGTTGACAGACCGCCTGGCGGAAATTTTCAA
TGGAGAATCCAAGGAATCTAACAATCAAGTTAGTGAATGGAGCTTCACCA
TAAATAATTTCAGAGTCCAGTTGTGGGATATTAACGGAGAACTGAAGAAT
CGCCAGATCTGGCCAAAGTATTATAAGAAAGTGAATGTTTTGATTTTTGT
ACTGGATAGCACGGATGCACTGCGGCTAAGCGAGGCGCGATGTGTTTTAT
GCGATGTTTTGATGCACCAGGAACTGGATAATGCTCCGCTGCTGATCGTG
TCCAACAAGAAGGACGCCTCGGGATCCCTGTCCATGTCCACGGTTATCGA
TTTGATGGGCCTATATCGCCTAACTGGTCGAGATTGGACTTTTGAGGAAT
GTTCCATGCGGACAGGGTCTGGTGTTCAGGAGATCGTAAATTGGATTAAC
GAAAAGATCAACAATAACAGGAAGTGAAAGCTTTCTAGACC

BS15195.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17819-PA 561 CG17819-RA 1..561 17..577 2805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17819-RA 646 CG17819-RA 15..576 16..577 2810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21884902..21885140 530..292 1195 100 Minus
3R 32079331 3R 21885395..21885536 157..16 710 100 Minus
3R 32079331 3R 21885198..21885332 292..158 675 100 Minus
3R 32079331 3R 21884798..21884847 577..528 250 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:51:03 has no hits.

BS15195.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:40 Download gff for BS15195.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17819-PA 1..561 17..577 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:53 Download gff for BS15195.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17819-PA 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:38 Download gff for BS15195.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17819-RA 11..579 12..584 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:11 Download gff for BS15195.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17819-RA 11..579 12..584 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:11 Download gff for BS15195.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21884795..21884845 530..584 92 <- Minus
3R 21884903..21885139 293..529 100 <- Minus
3R 21885198..21885332 158..292 100 <- Minus
3R 21885395..21885540 12..157 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:38 Download gff for BS15195.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17710517..17710567 530..584 92 <- Minus
arm_3R 17710625..17710861 293..529 100 <- Minus
arm_3R 17710920..17711054 158..292 100 <- Minus
arm_3R 17711117..17711262 12..157 98   Minus

BS15195.complete Sequence

593 bp assembled on 2006-11-01

GenBank Submission: FJ637887

> BS15195.complete
GAAGTTATCAGTCGACATGTGTTTTTACGGACCTGTTTCGTTCATAAAAA
AGATCCTGCCCGCAGGCTCTCAGAAATCATGTCTGCTCATTTTAGGATTA
GACAATGCGGGAAAATCCACGTTGACAGACCGCCTGGCGGAAATTTTCAA
TGGAGAATCCAAGGAATCTAACAATCAAGTTAGTGAATGGAGCTTCACCA
TAAATAATTTCAGAGTCCAGTTGTGGGATATTAACGGAGAACTGAAGAAT
CGCCAGATCTGGCCAAAGTATTATAAGAAAGTGAATGTTTTGATTTTTGT
ACTGGATAGCACGGATGCACTGCGGCTAAGCGAGGCGCGATGTGTTTTAT
GCGATGTTTTGATGCACCAGGAACTGGATAATGCTCCGCTGCTGATCGTG
TCCAACAAGAAGGACGCCTCGGGATCCCTGTCCATGTCCACGGTTATCGA
TTTGATGGGCCTATATCGCCTAACTGGTCGAGATTGGACTTTTGAGGAAT
GTTCCATGCGGACAGGGTCTGGTGTTCAGGAGATCGTAAATTGGATTAAC
GAAAAGATCAACAATAACAGGAAGTGAAAGCTTTCTAGACCAT

BS15195.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17819-RA 561 CG17819-PA 1..561 17..577 2805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17819-RA 646 CG17819-RA 15..576 16..577 2810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21884902..21885140 530..292 1195 100 Minus
3R 32079331 3R 21885395..21885536 157..16 710 100 Minus
3R 32079331 3R 21885198..21885332 292..158 675 100 Minus
3R 32079331 3R 21884798..21884847 577..528 250 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:47:22 has no hits.

BS15195.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:12 Download gff for BS15195.complete
Subject Subject Range Query Range Percent Splice Strand
CG17819-RA 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:02 Download gff for BS15195.complete
Subject Subject Range Query Range Percent Splice Strand
CG17819-RA 11..579 12..584 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:53 Download gff for BS15195.complete
Subject Subject Range Query Range Percent Splice Strand
CG17819-RA 16..575 17..576 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:12 Download gff for BS15195.complete
Subject Subject Range Query Range Percent Splice Strand
CG17819-RA 11..579 12..584 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:01 Download gff for BS15195.complete
Subject Subject Range Query Range Percent Splice Strand
CG17819-RA 16..575 17..576 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:01 Download gff for BS15195.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21884799..21884845 530..576 100 <- Minus
3R 21884903..21885139 293..529 100 <- Minus
3R 21885198..21885332 158..292 100 <- Minus
3R 21885395..21885535 17..157 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:53 Download gff for BS15195.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17710521..17710567 530..576 100 <- Minus
arm_3R 17710625..17710861 293..529 100 <- Minus
arm_3R 17710920..17711054 158..292 100 <- Minus
arm_3R 17711117..17711257 17..157 100   Minus

BS15195.pep Sequence

Translation from 16 to 576

> BS15195.pep
MCFYGPVSFIKKILPAGSQKSCLLILGLDNAGKSTLTDRLAEIFNGESKE
SNNQVSEWSFTINNFRVQLWDINGELKNRQIWPKYYKKVNVLIFVLDSTD
ALRLSEARCVLCDVLMHQELDNAPLLIVSNKKDASGSLSMSTVIDLMGLY
RLTGRDWTFEECSMRTGSGVQEIVNWINEKINNNRK*

BS15195.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17819-PA 186 CG17819-PA 1..186 1..186 972 100 Plus
dnd-PA 179 CG6560-PA 2..173 5..177 294 34.8 Plus
Arf79F-PJ 182 CG8385-PJ 14..179 17..183 245 33.9 Plus
Arf79F-PI 182 CG8385-PI 14..179 17..183 245 33.9 Plus
Arf79F-PH 182 CG8385-PH 14..179 17..183 245 33.9 Plus