Clone BS15201 Report

Search the DGRC for BS15201

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptAprt-RA
Protein status:BS15201.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15201.3prime Sequence

579 bp (579 high quality bases) assembled on 2006-10-24

> BS15201.3prime
ATGGTCTAGAAAGCTTTCCCCATTTAGGGAGGGAATGCACTTTTCCATCC
AGCCTTTTGCGACCCTCCAGTCCAACTAGTTCCATGACCACCAGGCTCTC
CACGACAACGCCACCCACCTTGCCGATGAGTTCAGTGGCGGCCACCAGGG
AACCACCTGTGGCTAGTAGATCGTCAACGACAACGACTTTTTGGCCGGGC
TTGATGGCGGATTTTTGCAGCTCAAAGGTGTCAATACCGTACTCCAGTTT
GTATTCCACGGAAACCACTTCTCCCGCCAGCTTGCCCTTCTTGCGAATCG
GAGCACATCCCAGGCCCAGCTCGGTGGCTATGAGGAGATTAAAGAGGAAG
CCCCGCGAGTCCAGTCCCACGATGACCTCCGCCTCGGGAGCACTTTCCCG
GATGTGATCAACAAGCAAATCGCGCAAGTACACACATGCCTTCGGATCGG
TGAGGGCTCCGAATATGTCACGGAACAGAATGCCCTCCTTTGGGAAGTTC
GGATACTCGCCAATCTTGCTCTTTACATAGTCTAGCTTGTCTTCCGCGCT
GATTGAGGGGCTCATGTCGACTGATAACT

BS15201.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG18315-PA 549 Aprt-RA 1..537 565..29 2685 100 Minus
CG18315-PB 99 Aprt-RB 1..95 565..471 475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
Aprt-RD 924 CG18315-RD 235..771 565..29 2685 100 Minus
Aprt-RC 894 CG18315-RC 108..644 565..29 2685 100 Minus
Aprt-RA 797 CG18315-RA 108..644 565..29 2685 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1884322..1884561 232..471 1200 100 Plus
3L 28110227 3L 1884045..1884248 29..232 1020 100 Plus
3L 28110227 3L 1884691..1884785 471..565 475 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:53:52 has no hits.

BS15201.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:42 Download gff for BS15201.3prime
Subject Subject Range Query Range Percent Splice Strand
Aprt-PA 1..542 24..565 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:54 Download gff for BS15201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18315-PA 1..542 24..565 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:54:04 Download gff for BS15201.3prime
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 92..642 24..572 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:32 Download gff for BS15201.3prime
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 99..649 24..572 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:32 Download gff for BS15201.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1884040..1884248 24..232 99 <- Plus
3L 1884323..1884560 233..470 100 <- Plus
3L 1884691..1884791 471..572 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:54:04 Download gff for BS15201.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1884040..1884248 24..232 99 <- Plus
arm_3L 1884323..1884560 233..470 100 <- Plus
arm_3L 1884691..1884791 471..572 96   Plus

BS15201.5prime Sequence

579 bp (579 high quality bases) assembled on 2006-10-24

> BS15201.5prime
GAAGTTATCAGTCGACATGAGCCCCTCAATCAGCGCGGAAGACAAGCTAG
ACTATGTAAAGAGCAAGATTGGCGAGTATCCGAACTTCCCAAAGGAGGGC
ATTCTGTTCCGTGACATATTCGGAGCCCTCACCGATCCGAAGGCATGTGT
GTACTTGCGCGATTTGCTTGTTGATCACATCCGGGAAAGTGCTCCCGAGG
CGGAGGTCATCGTGGGACTGGACTCGCGGGGCTTCCTCTTTAATCTCCTC
ATAGCCACCGAGCTGGGCCTGGGATGTGCTCCGATTCGCAAGAAGGGCAA
GCTGGCGGGAGAAGTGGTTTCCGTGGAATACAAACTGGAGTACGGTATTG
ACACCTTTGAGCTGCAAAAATCCGCCATCAAGCCCGGCCAAAAAGTCGTT
GTCGTTGACGATCTACTAGCCACAGGTGGTTCCCTGGTGGCCGCCACTGA
ACTCATCGGCAAGGTGGGTGGCGTTGTCGTGGAGAGCCTGGTGGTCATGG
AACTAGTTGGACTGGAGGGTCGCAAAAGGCTGGATGGAAAAGTGCATTCC
CTCATTAAGTACTGAAAGCTTTCTAGACC

BS15201.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG18315-PA 549 Aprt-RA 1..549 17..565 2745 100 Plus
CG18315-PB 99 Aprt-RB 1..95 17..111 475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
Aprt-RD 924 CG18315-RD 235..783 17..565 2745 100 Plus
Aprt-RC 894 CG18315-RC 108..656 17..565 2745 100 Plus
Aprt-RA 797 CG18315-RA 108..656 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1884322..1884561 350..111 1200 100 Minus
3L 28110227 3L 1884033..1884248 565..350 1080 100 Minus
3L 28110227 3L 1884691..1884785 111..17 475 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:54:47 has no hits.

BS15201.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:43 Download gff for BS15201.5prime
Subject Subject Range Query Range Percent Splice Strand
Aprt-PA 1..549 17..565 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:56 Download gff for BS15201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18315-PA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:09 Download gff for BS15201.5prime
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 92..660 10..577 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:49:00 Download gff for BS15201.5prime
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 99..667 10..577 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:49:00 Download gff for BS15201.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1884323..1884560 112..349 100 <- Minus
3L 1884691..1884791 10..111 96   Minus
3L 1884022..1884248 350..577 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:09 Download gff for BS15201.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1884022..1884248 350..577 97 <- Minus
arm_3L 1884323..1884560 112..349 100 <- Minus
arm_3L 1884691..1884791 10..111 96   Minus

BS15201.complete Sequence

581 bp assembled on 2006-11-01

GenBank Submission: FJ637888

> BS15201.complete
GAAGTTATCAGTCGACATGAGCCCCTCAATCAGCGCGGAAGACAAGCTAG
ACTATGTAAAGAGCAAGATTGGCGAGTATCCGAACTTCCCAAAGGAGGGC
ATTCTGTTCCGTGACATATTCGGAGCCCTCACCGATCCGAAGGCATGTGT
GTACTTGCGCGATTTGCTTGTTGATCACATCCGGGAAAGTGCTCCCGAGG
CGGAGGTCATCGTGGGACTGGACTCGCGGGGCTTCCTCTTTAATCTCCTC
ATAGCCACCGAGCTGGGCCTGGGATGTGCTCCGATTCGCAAGAAGGGCAA
GCTGGCGGGAGAAGTGGTTTCCGTGGAATACAAACTGGAGTACGGTATTG
ACACCTTTGAGCTGCAAAAATCCGCCATCAAGCCCGGCCAAAAAGTCGTT
GTCGTTGACGATCTACTAGCCACAGGTGGTTCCCTGGTGGCCGCCACTGA
ACTCATCGGCAAGGTGGGTGGCGTTGTCGTGGAGAGCCTGGTGGTCATGG
AACTAGTTGGACTGGAGGGTCGCAAAAGGCTGGATGGAAAAGTGCATTCC
CTCATTAAGTACTGAAAGCTTTCTAGACCAT

BS15201.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Aprt-RD 549 CG18315-PD 1..549 17..565 2745 100 Plus
Aprt-RC 549 CG18315-PC 1..549 17..565 2745 100 Plus
Aprt-RA 549 CG18315-PA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Aprt-RD 924 CG18315-RD 235..783 17..565 2745 100 Plus
Aprt-RC 894 CG18315-RC 108..656 17..565 2745 100 Plus
Aprt-RA 797 CG18315-RA 108..656 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1884322..1884561 350..111 1200 100 Minus
3L 28110227 3L 1884033..1884248 565..350 1080 100 Minus
3L 28110227 3L 1884691..1884785 111..17 475 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:49:34 has no hits.

BS15201.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:21 Download gff for BS15201.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:10 Download gff for BS15201.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 92..660 10..577 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:05 Download gff for BS15201.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 101..648 17..564 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:21 Download gff for BS15201.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 92..660 10..577 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:09 Download gff for BS15201.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 108..655 17..564 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:09 Download gff for BS15201.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1884034..1884248 350..564 100 <- Minus
3L 1884323..1884560 112..349 100 <- Minus
3L 1884691..1884785 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:05 Download gff for BS15201.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1884034..1884248 350..564 100 <- Minus
arm_3L 1884323..1884560 112..349 100 <- Minus
arm_3L 1884691..1884785 17..111 100   Minus

BS15201.pep Sequence

Translation from 16 to 564

> BS15201.pep
MSPSISAEDKLDYVKSKIGEYPNFPKEGILFRDIFGALTDPKACVYLRDL
LVDHIRESAPEAEVIVGLDSRGFLFNLLIATELGLGCAPIRKKGKLAGEV
VSVEYKLEYGIDTFELQKSAIKPGQKVVVVDDLLATGGSLVAATELIGKV
GGVVVESLVVMELVGLEGRKRLDGKVHSLIKY*

BS15201.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
Aprt-PD 182 CG18315-PD 1..182 1..182 908 100 Plus
Aprt-PC 182 CG18315-PC 1..182 1..182 908 100 Plus
Aprt-PA 182 CG18315-PA 1..182 1..182 908 100 Plus