Clone Sequence Records
BS15201.3prime Sequence
579 bp (579 high quality bases) assembled on 2006-10-24
> BS15201.3prime
ATGGTCTAGAAAGCTTTCCCCATTTAGGGAGGGAATGCACTTTTCCATCC
AGCCTTTTGCGACCCTCCAGTCCAACTAGTTCCATGACCACCAGGCTCTC
CACGACAACGCCACCCACCTTGCCGATGAGTTCAGTGGCGGCCACCAGGG
AACCACCTGTGGCTAGTAGATCGTCAACGACAACGACTTTTTGGCCGGGC
TTGATGGCGGATTTTTGCAGCTCAAAGGTGTCAATACCGTACTCCAGTTT
GTATTCCACGGAAACCACTTCTCCCGCCAGCTTGCCCTTCTTGCGAATCG
GAGCACATCCCAGGCCCAGCTCGGTGGCTATGAGGAGATTAAAGAGGAAG
CCCCGCGAGTCCAGTCCCACGATGACCTCCGCCTCGGGAGCACTTTCCCG
GATGTGATCAACAAGCAAATCGCGCAAGTACACACATGCCTTCGGATCGG
TGAGGGCTCCGAATATGTCACGGAACAGAATGCCCTCCTTTGGGAAGTTC
GGATACTCGCCAATCTTGCTCTTTACATAGTCTAGCTTGTCTTCCGCGCT
GATTGAGGGGCTCATGTCGACTGATAACT
BS15201.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18315-PA | 549 | Aprt-RA | 1..537 | 565..29 | 2685 | 100 | Minus |
CG18315-PB | 99 | Aprt-RB | 1..95 | 565..471 | 475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aprt-RD | 924 | CG18315-RD | 235..771 | 565..29 | 2685 | 100 | Minus |
Aprt-RC | 894 | CG18315-RC | 108..644 | 565..29 | 2685 | 100 | Minus |
Aprt-RA | 797 | CG18315-RA | 108..644 | 565..29 | 2685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:53:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1884322..1884561 | 232..471 | 1200 | 100 | Plus |
3L | 28110227 | 3L | 1884045..1884248 | 29..232 | 1020 | 100 | Plus |
3L | 28110227 | 3L | 1884691..1884785 | 471..565 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:53:52 has no hits.
BS15201.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:42 Download gff for
BS15201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-PA | 1..542 | 24..565 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:54 Download gff for
BS15201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18315-PA | 1..542 | 24..565 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:54:04 Download gff for
BS15201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 92..642 | 24..572 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:32 Download gff for
BS15201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 99..649 | 24..572 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:32 Download gff for
BS15201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1884040..1884248 | 24..232 | 99 | <- | Plus |
3L | 1884323..1884560 | 233..470 | 100 | <- | Plus |
3L | 1884691..1884791 | 471..572 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:54:04 Download gff for
BS15201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1884040..1884248 | 24..232 | 99 | <- | Plus |
arm_3L | 1884323..1884560 | 233..470 | 100 | <- | Plus |
arm_3L | 1884691..1884791 | 471..572 | 96 | | Plus |
BS15201.5prime Sequence
579 bp (579 high quality bases) assembled on 2006-10-24
> BS15201.5prime
GAAGTTATCAGTCGACATGAGCCCCTCAATCAGCGCGGAAGACAAGCTAG
ACTATGTAAAGAGCAAGATTGGCGAGTATCCGAACTTCCCAAAGGAGGGC
ATTCTGTTCCGTGACATATTCGGAGCCCTCACCGATCCGAAGGCATGTGT
GTACTTGCGCGATTTGCTTGTTGATCACATCCGGGAAAGTGCTCCCGAGG
CGGAGGTCATCGTGGGACTGGACTCGCGGGGCTTCCTCTTTAATCTCCTC
ATAGCCACCGAGCTGGGCCTGGGATGTGCTCCGATTCGCAAGAAGGGCAA
GCTGGCGGGAGAAGTGGTTTCCGTGGAATACAAACTGGAGTACGGTATTG
ACACCTTTGAGCTGCAAAAATCCGCCATCAAGCCCGGCCAAAAAGTCGTT
GTCGTTGACGATCTACTAGCCACAGGTGGTTCCCTGGTGGCCGCCACTGA
ACTCATCGGCAAGGTGGGTGGCGTTGTCGTGGAGAGCCTGGTGGTCATGG
AACTAGTTGGACTGGAGGGTCGCAAAAGGCTGGATGGAAAAGTGCATTCC
CTCATTAAGTACTGAAAGCTTTCTAGACC
BS15201.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18315-PA | 549 | Aprt-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
CG18315-PB | 99 | Aprt-RB | 1..95 | 17..111 | 475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:54:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aprt-RD | 924 | CG18315-RD | 235..783 | 17..565 | 2745 | 100 | Plus |
Aprt-RC | 894 | CG18315-RC | 108..656 | 17..565 | 2745 | 100 | Plus |
Aprt-RA | 797 | CG18315-RA | 108..656 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:54:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1884322..1884561 | 350..111 | 1200 | 100 | Minus |
3L | 28110227 | 3L | 1884033..1884248 | 565..350 | 1080 | 100 | Minus |
3L | 28110227 | 3L | 1884691..1884785 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:54:47 has no hits.
BS15201.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:43 Download gff for
BS15201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-PA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:53:56 Download gff for
BS15201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18315-PA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:09 Download gff for
BS15201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 92..660 | 10..577 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:49:00 Download gff for
BS15201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 99..667 | 10..577 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:49:00 Download gff for
BS15201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1884323..1884560 | 112..349 | 100 | <- | Minus |
3L | 1884691..1884791 | 10..111 | 96 | | Minus |
3L | 1884022..1884248 | 350..577 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:09 Download gff for
BS15201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1884022..1884248 | 350..577 | 97 | <- | Minus |
arm_3L | 1884323..1884560 | 112..349 | 100 | <- | Minus |
arm_3L | 1884691..1884791 | 10..111 | 96 | | Minus |
BS15201.complete Sequence
581 bp assembled on 2006-11-01
GenBank Submission: FJ637888
> BS15201.complete
GAAGTTATCAGTCGACATGAGCCCCTCAATCAGCGCGGAAGACAAGCTAG
ACTATGTAAAGAGCAAGATTGGCGAGTATCCGAACTTCCCAAAGGAGGGC
ATTCTGTTCCGTGACATATTCGGAGCCCTCACCGATCCGAAGGCATGTGT
GTACTTGCGCGATTTGCTTGTTGATCACATCCGGGAAAGTGCTCCCGAGG
CGGAGGTCATCGTGGGACTGGACTCGCGGGGCTTCCTCTTTAATCTCCTC
ATAGCCACCGAGCTGGGCCTGGGATGTGCTCCGATTCGCAAGAAGGGCAA
GCTGGCGGGAGAAGTGGTTTCCGTGGAATACAAACTGGAGTACGGTATTG
ACACCTTTGAGCTGCAAAAATCCGCCATCAAGCCCGGCCAAAAAGTCGTT
GTCGTTGACGATCTACTAGCCACAGGTGGTTCCCTGGTGGCCGCCACTGA
ACTCATCGGCAAGGTGGGTGGCGTTGTCGTGGAGAGCCTGGTGGTCATGG
AACTAGTTGGACTGGAGGGTCGCAAAAGGCTGGATGGAAAAGTGCATTCC
CTCATTAAGTACTGAAAGCTTTCTAGACCAT
BS15201.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aprt-RD | 549 | CG18315-PD | 1..549 | 17..565 | 2745 | 100 | Plus |
Aprt-RC | 549 | CG18315-PC | 1..549 | 17..565 | 2745 | 100 | Plus |
Aprt-RA | 549 | CG18315-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aprt-RD | 924 | CG18315-RD | 235..783 | 17..565 | 2745 | 100 | Plus |
Aprt-RC | 894 | CG18315-RC | 108..656 | 17..565 | 2745 | 100 | Plus |
Aprt-RA | 797 | CG18315-RA | 108..656 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1884322..1884561 | 350..111 | 1200 | 100 | Minus |
3L | 28110227 | 3L | 1884033..1884248 | 565..350 | 1080 | 100 | Minus |
3L | 28110227 | 3L | 1884691..1884785 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:49:34 has no hits.
BS15201.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:21 Download gff for
BS15201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:10 Download gff for
BS15201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 92..660 | 10..577 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:05 Download gff for
BS15201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 101..648 | 17..564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:21 Download gff for
BS15201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 92..660 | 10..577 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:09 Download gff for
BS15201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 108..655 | 17..564 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:09 Download gff for
BS15201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1884034..1884248 | 350..564 | 100 | <- | Minus |
3L | 1884323..1884560 | 112..349 | 100 | <- | Minus |
3L | 1884691..1884785 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:05 Download gff for
BS15201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1884034..1884248 | 350..564 | 100 | <- | Minus |
arm_3L | 1884323..1884560 | 112..349 | 100 | <- | Minus |
arm_3L | 1884691..1884785 | 17..111 | 100 | | Minus |
BS15201.pep Sequence
Translation from 16 to 564
> BS15201.pep
MSPSISAEDKLDYVKSKIGEYPNFPKEGILFRDIFGALTDPKACVYLRDL
LVDHIRESAPEAEVIVGLDSRGFLFNLLIATELGLGCAPIRKKGKLAGEV
VSVEYKLEYGIDTFELQKSAIKPGQKVVVVDDLLATGGSLVAATELIGKV
GGVVVESLVVMELVGLEGRKRLDGKVHSLIKY*
BS15201.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aprt-PD | 182 | CG18315-PD | 1..182 | 1..182 | 908 | 100 | Plus |
Aprt-PC | 182 | CG18315-PC | 1..182 | 1..182 | 908 | 100 | Plus |
Aprt-PA | 182 | CG18315-PA | 1..182 | 1..182 | 908 | 100 | Plus |