Clone BS15206 Report

Search the DGRC for BS15206

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG17721-RA
Protein status:BS15206.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15206.5prime Sequence

444 bp (444 high quality bases) assembled on 2006-10-24

> BS15206.5prime
GAAGTTATCAGTCGACATGGTCTACGTGAATCTAATAATAGGCTTGGGCC
TGGTGTCCGTTGCCGCTTTCGCCTATTTCAATTGGCATAACGACCGCAGT
TCGCCTTACTCCAGGTCGCCGAATGGCAGGTGCACCTTTTGCCAGTATGA
ACTGAGTGATGACGACCGGCGCCGCATGAGGTGTGGACATGCCATGCACA
ATCTCTGCTACTTGGTGTTTCGCTATTCCCATAGAAAGTGCCTCGAGTGC
GATAAGGTGGTTAATGTCAATATAGCCGGTGACTTGTGCACGATTTGTTT
AGATCCCCTAAGTGTTTACACCATGGTGTATCTGCGCTGCAGCCACGCCT
TGCATGAGAAGTGCCTCCACCAGTACCAGGCTAATGGTGGCCGCCACTGT
CCGGTCTGCAGAATGGGAATTAAGGAGTAGAAGCTTTCTAGACC

BS15206.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17721-PA 414 CG17721-RA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17721-RB 601 CG17721-RB 27..440 17..430 2070 100 Plus
CG17721-RA 844 CG17721-RA 270..683 17..430 2070 100 Plus
CG17721-RC 637 CG17721-RC 158..476 112..430 1595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11235598..11235916 112..430 1595 100 Plus
3R 32079331 3R 11235409..11235508 17..116 500 100 Plus
Blast to na_te.dros performed 2015-02-10 16:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Ivk 5402 Ivk IVK 5402bp 4466..4528 338..275 111 70.1 Minus

BS15206.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:49 Download gff for BS15206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-PA 1..414 17..430 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:05 Download gff for BS15206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-PA 1..414 17..430 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:29:42 Download gff for BS15206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 261..688 9..438 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:35 Download gff for BS15206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 261..688 9..438 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:35 Download gff for BS15206.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11235400..11235506 9..114 96 -> Plus
3R 11235601..11235921 115..438 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:29:42 Download gff for BS15206.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7061122..7061228 9..114 96 -> Plus
arm_3R 7061323..7061643 115..438 98   Plus

BS15206.3prime Sequence

444 bp (444 high quality bases) assembled on 2006-10-24

> BS15206.3prime
ATGGTCTAGAAAGCTTCTACTCCTTAATTCCCATTCTGCAGACCGGACAG
TGGCGGCCACCATTAGCCTGGTACTGGTGGAGGCACTTCTCATGCAAGGC
GTGGCTGCAGCGCAGATACACCATGGTGTAAACACTTAGGGGATCTAAAC
AAATCGTGCACAAGTCACCGGCTATATTGACATTAACCACCTTATCGCAC
TCGAGGCACTTTCTATGGGAATAGCGAAACACCAAGTAGCAGAGATTGTG
CATGGCATGTCCACACCTCATGCGGCGCCGGTCGTCATCACTCAGTTCAT
ACTGGCAAAAGGTGCACCTGCCATTCGGCGACCTGGAGTAAGGCGAACTG
CGGTCGTTATGCCAATTGAAATAGGCGAAAGCGGCAACGGACACCAGGCC
CAAGCCTATTATTAGATTCACGTAGACCATGTCGACTGATAACT

BS15206.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17721-PA 414 CG17721-RA 1..414 430..17 2070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17721-RB 601 CG17721-RB 27..440 430..17 2070 100 Minus
CG17721-RA 844 CG17721-RA 270..683 430..17 2070 100 Minus
CG17721-RC 637 CG17721-RC 158..476 335..17 1595 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11235598..11235916 335..17 1595 100 Minus
3R 32079331 3R 11235409..11235508 430..331 500 100 Minus
Blast to na_te.dros performed 2015-02-12 10:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ivk 5402 Ivk IVK 5402bp 4466..4528 109..172 111 70.1 Plus

BS15206.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:48 Download gff for BS15206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-PA 1..414 17..430 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:04 Download gff for BS15206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-PA 1..414 17..430 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:04 Download gff for BS15206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 261..688 9..438 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:00:58 Download gff for BS15206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 261..688 9..438 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:00:58 Download gff for BS15206.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11235400..11235506 333..438 96 -> Minus
3R 11235601..11235916 17..332 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:04 Download gff for BS15206.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7061122..7061228 333..438 96 -> Minus
arm_3R 7061323..7061638 17..332 100 -> Minus

BS15206.complete Sequence

446 bp assembled on 2006-11-01

GenBank Submission: FJ637890

> BS15206.complete
GAAGTTATCAGTCGACATGGTCTACGTGAATCTAATAATAGGCTTGGGCC
TGGTGTCCGTTGCCGCTTTCGCCTATTTCAATTGGCATAACGACCGCAGT
TCGCCTTACTCCAGGTCGCCGAATGGCAGGTGCACCTTTTGCCAGTATGA
ACTGAGTGATGACGACCGGCGCCGCATGAGGTGTGGACATGCCATGCACA
ATCTCTGCTACTTGGTGTTTCGCTATTCCCATAGAAAGTGCCTCGAGTGC
GATAAGGTGGTTAATGTCAATATAGCCGGTGACTTGTGCACGATTTGTTT
AGATCCCCTAAGTGTTTACACCATGGTGTATCTGCGCTGCAGCCACGCCT
TGCATGAGAAGTGCCTCCACCAGTACCAGGCTAATGGTGGCCGCCACTGT
CCGGTCTGCAGAATGGGAATTAAGGAGTAGAAGCTTTCTAGACCAT

BS15206.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17721-RB 414 CG17721-PB 1..414 17..430 2070 100 Plus
CG17721-RA 414 CG17721-PA 1..414 17..430 2070 100 Plus
CG17721-RC 450 CG17721-PC 132..450 112..430 1595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17721-RB 601 CG17721-RB 27..440 17..430 2070 100 Plus
CG17721-RA 844 CG17721-RA 270..683 17..430 2070 100 Plus
CG17721-RC 637 CG17721-RC 158..476 112..430 1595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11235598..11235916 112..430 1595 100 Plus
3R 32079331 3R 11235409..11235508 17..116 500 100 Plus
Blast to na_te.dros performed 2014-11-27 11:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ivk 5402 Ivk IVK 5402bp 4466..4528 338..275 111 70.1 Minus

BS15206.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:36 Download gff for BS15206.complete
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 1..414 17..430 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:20 Download gff for BS15206.complete
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 18..445 9..438 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:09:31 Download gff for BS15206.complete
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 270..683 17..430 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:36 Download gff for BS15206.complete
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 18..445 9..438 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:47 Download gff for BS15206.complete
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 270..683 17..430 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:47 Download gff for BS15206.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11235601..11235916 115..430 100   Plus
3R 11235409..11235506 17..114 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:09:31 Download gff for BS15206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7061131..7061228 17..114 100 -> Plus
arm_3R 7061323..7061638 115..430 100   Plus

BS15206.pep Sequence

Translation from 16 to 429

> BS15206.pep
MVYVNLIIGLGLVSVAAFAYFNWHNDRSSPYSRSPNGRCTFCQYELSDDD
RRRMRCGHAMHNLCYLVFRYSHRKCLECDKVVNVNIAGDLCTICLDPLSV
YTMVYLRCSHALHEKCLHQYQANGGRHCPVCRMGIKE*

BS15206.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17721-PB 137 CG17721-PB 1..137 1..137 771 100 Plus
CG17721-PA 137 CG17721-PA 1..137 1..137 771 100 Plus
CG17721-PC 149 CG17721-PC 1..149 1..137 748 91.9 Plus