Clone Sequence Records
BS15206.5prime Sequence
444 bp (444 high quality bases) assembled on 2006-10-24
> BS15206.5prime
GAAGTTATCAGTCGACATGGTCTACGTGAATCTAATAATAGGCTTGGGCC
TGGTGTCCGTTGCCGCTTTCGCCTATTTCAATTGGCATAACGACCGCAGT
TCGCCTTACTCCAGGTCGCCGAATGGCAGGTGCACCTTTTGCCAGTATGA
ACTGAGTGATGACGACCGGCGCCGCATGAGGTGTGGACATGCCATGCACA
ATCTCTGCTACTTGGTGTTTCGCTATTCCCATAGAAAGTGCCTCGAGTGC
GATAAGGTGGTTAATGTCAATATAGCCGGTGACTTGTGCACGATTTGTTT
AGATCCCCTAAGTGTTTACACCATGGTGTATCTGCGCTGCAGCCACGCCT
TGCATGAGAAGTGCCTCCACCAGTACCAGGCTAATGGTGGCCGCCACTGT
CCGGTCTGCAGAATGGGAATTAAGGAGTAGAAGCTTTCTAGACC
BS15206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17721-PA | 414 | CG17721-RA | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17721-RB | 601 | CG17721-RB | 27..440 | 17..430 | 2070 | 100 | Plus |
CG17721-RA | 844 | CG17721-RA | 270..683 | 17..430 | 2070 | 100 | Plus |
CG17721-RC | 637 | CG17721-RC | 158..476 | 112..430 | 1595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11235598..11235916 | 112..430 | 1595 | 100 | Plus |
3R | 32079331 | 3R | 11235409..11235508 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 16:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ivk | 5402 | Ivk IVK 5402bp | 4466..4528 | 338..275 | 111 | 70.1 | Minus |
BS15206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:49 Download gff for
BS15206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-PA | 1..414 | 17..430 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:05 Download gff for
BS15206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-PA | 1..414 | 17..430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:29:42 Download gff for
BS15206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 261..688 | 9..438 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:35 Download gff for
BS15206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 261..688 | 9..438 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:35 Download gff for
BS15206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11235400..11235506 | 9..114 | 96 | -> | Plus |
3R | 11235601..11235921 | 115..438 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:29:42 Download gff for
BS15206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7061122..7061228 | 9..114 | 96 | -> | Plus |
arm_3R | 7061323..7061643 | 115..438 | 98 | | Plus |
BS15206.3prime Sequence
444 bp (444 high quality bases) assembled on 2006-10-24
> BS15206.3prime
ATGGTCTAGAAAGCTTCTACTCCTTAATTCCCATTCTGCAGACCGGACAG
TGGCGGCCACCATTAGCCTGGTACTGGTGGAGGCACTTCTCATGCAAGGC
GTGGCTGCAGCGCAGATACACCATGGTGTAAACACTTAGGGGATCTAAAC
AAATCGTGCACAAGTCACCGGCTATATTGACATTAACCACCTTATCGCAC
TCGAGGCACTTTCTATGGGAATAGCGAAACACCAAGTAGCAGAGATTGTG
CATGGCATGTCCACACCTCATGCGGCGCCGGTCGTCATCACTCAGTTCAT
ACTGGCAAAAGGTGCACCTGCCATTCGGCGACCTGGAGTAAGGCGAACTG
CGGTCGTTATGCCAATTGAAATAGGCGAAAGCGGCAACGGACACCAGGCC
CAAGCCTATTATTAGATTCACGTAGACCATGTCGACTGATAACT
BS15206.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17721-PA | 414 | CG17721-RA | 1..414 | 430..17 | 2070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17721-RB | 601 | CG17721-RB | 27..440 | 430..17 | 2070 | 100 | Minus |
CG17721-RA | 844 | CG17721-RA | 270..683 | 430..17 | 2070 | 100 | Minus |
CG17721-RC | 637 | CG17721-RC | 158..476 | 335..17 | 1595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11235598..11235916 | 335..17 | 1595 | 100 | Minus |
3R | 32079331 | 3R | 11235409..11235508 | 430..331 | 500 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ivk | 5402 | Ivk IVK 5402bp | 4466..4528 | 109..172 | 111 | 70.1 | Plus |
BS15206.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:48 Download gff for
BS15206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-PA | 1..414 | 17..430 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:04 Download gff for
BS15206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-PA | 1..414 | 17..430 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:04 Download gff for
BS15206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 261..688 | 9..438 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:00:58 Download gff for
BS15206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 261..688 | 9..438 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:00:58 Download gff for
BS15206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11235400..11235506 | 333..438 | 96 | -> | Minus |
3R | 11235601..11235916 | 17..332 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:04 Download gff for
BS15206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7061122..7061228 | 333..438 | 96 | -> | Minus |
arm_3R | 7061323..7061638 | 17..332 | 100 | -> | Minus |
BS15206.complete Sequence
446 bp assembled on 2006-11-01
GenBank Submission: FJ637890
> BS15206.complete
GAAGTTATCAGTCGACATGGTCTACGTGAATCTAATAATAGGCTTGGGCC
TGGTGTCCGTTGCCGCTTTCGCCTATTTCAATTGGCATAACGACCGCAGT
TCGCCTTACTCCAGGTCGCCGAATGGCAGGTGCACCTTTTGCCAGTATGA
ACTGAGTGATGACGACCGGCGCCGCATGAGGTGTGGACATGCCATGCACA
ATCTCTGCTACTTGGTGTTTCGCTATTCCCATAGAAAGTGCCTCGAGTGC
GATAAGGTGGTTAATGTCAATATAGCCGGTGACTTGTGCACGATTTGTTT
AGATCCCCTAAGTGTTTACACCATGGTGTATCTGCGCTGCAGCCACGCCT
TGCATGAGAAGTGCCTCCACCAGTACCAGGCTAATGGTGGCCGCCACTGT
CCGGTCTGCAGAATGGGAATTAAGGAGTAGAAGCTTTCTAGACCAT
BS15206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17721-RB | 414 | CG17721-PB | 1..414 | 17..430 | 2070 | 100 | Plus |
CG17721-RA | 414 | CG17721-PA | 1..414 | 17..430 | 2070 | 100 | Plus |
CG17721-RC | 450 | CG17721-PC | 132..450 | 112..430 | 1595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17721-RB | 601 | CG17721-RB | 27..440 | 17..430 | 2070 | 100 | Plus |
CG17721-RA | 844 | CG17721-RA | 270..683 | 17..430 | 2070 | 100 | Plus |
CG17721-RC | 637 | CG17721-RC | 158..476 | 112..430 | 1595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:03:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11235598..11235916 | 112..430 | 1595 | 100 | Plus |
3R | 32079331 | 3R | 11235409..11235508 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 11:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ivk | 5402 | Ivk IVK 5402bp | 4466..4528 | 338..275 | 111 | 70.1 | Minus |
BS15206.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:36 Download gff for
BS15206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 1..414 | 17..430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:20 Download gff for
BS15206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 18..445 | 9..438 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:09:31 Download gff for
BS15206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 270..683 | 17..430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:36 Download gff for
BS15206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 18..445 | 9..438 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:47 Download gff for
BS15206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 270..683 | 17..430 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:47 Download gff for
BS15206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11235601..11235916 | 115..430 | 100 | | Plus |
3R | 11235409..11235506 | 17..114 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:09:31 Download gff for
BS15206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7061131..7061228 | 17..114 | 100 | -> | Plus |
arm_3R | 7061323..7061638 | 115..430 | 100 | | Plus |
BS15206.pep Sequence
Translation from 16 to 429
> BS15206.pep
MVYVNLIIGLGLVSVAAFAYFNWHNDRSSPYSRSPNGRCTFCQYELSDDD
RRRMRCGHAMHNLCYLVFRYSHRKCLECDKVVNVNIAGDLCTICLDPLSV
YTMVYLRCSHALHEKCLHQYQANGGRHCPVCRMGIKE*
BS15206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17721-PB | 137 | CG17721-PB | 1..137 | 1..137 | 771 | 100 | Plus |
CG17721-PA | 137 | CG17721-PA | 1..137 | 1..137 | 771 | 100 | Plus |
CG17721-PC | 149 | CG17721-PC | 1..149 | 1..137 | 748 | 91.9 | Plus |