Clone Sequence Records
BS15208.complete Sequence
2051 bp assembled on 2009-12-07
GenBank Submission: KX803954
> BS15208.complete
GAAGTTATCAGTCGACATGAGCGGTTGTCGTCGCAATCGAAAGCTGACGA
TGGCCGTAAGTGGATGTCTGATAATTGCTGTGATGGCCCTCACCGTTGGG
CTTTGTGTGGGACTGAGCGGTGACACCGACGCCCCCGAGGAACAGCCAAG
GTTTACGATCGACCATGAGGCCAACACCTTCATGCTGGATGGCCAGCCCT
TCCGGTACGTCTCTGGATCGTTTCACTATTTCCGCGCTGTACCCGAGTCC
TGGCGAAGTCGGTTGCGCACCATGCGAGCATCTGGTCTTAATGCTCTGGA
TACCTATGTTGAATGGTCGCTCCACAATCCGCACGATGGAGAATACAACT
GGGAGGGCATTGCGGATGTTGTCAAGTTTCTGGAGATTGCTCAGGAGGAA
GACTTCTACATCATTCTCCGCCCAGGTCCCTACATTTGTGCTGAGCGAGA
TAATGGTGGTCTTCCTCACTGGTTGTTTACCAAATACCCGTCCATCAAGA
TGCGGACCAATGACCCCAACTACATCTCAGAGGTGGGCAAGTGGTATGCG
GAGCTGATGCCACGCCTCCAGCACCTGTTCGTAGGCAACGGCGGCAAGAT
CATAATGGTGCAGGTGGAGAACGAGTACGGTGACTATGCCTGCGATCACG
ACTACCTCAACTGGCTGCGAGACGAGACGGAGAAGTATGTGTCCGGCAAG
GCGCTGCTCTTCACGGTGGACATACCCAACGAGAAGATGAGCTGTGGAAA
GATCGAGAACGTGTTCGCCACCACTGACTTCGGCATCGATCGCATCAATG
AGATTGACAAAATCTGGGCAATGCTGCGTGCCCTGCAGCCGACTGGCCCA
CTGGTCAACTCGGAGTTCTATCCCGGCTGGCTAACGCATTGGCAGGAGCA
GAACCAAAGGCGTGATGGCCAGGAGGTAGCCAATGCACTAAGGACAATTC
TGAGCTACAACGCTAGTGTTAACCTCTATATGTTCTTTGGCGGCACAAAC
TTTGGGTTCACTGCTGGTGCCAACTATAATCTGGACGGTGGCATCGGATA
TGCGGCAGACATAACCAGCTACGACTACGATGCAGTGATGGACGAGGCCG
GTGGCGTCACCACTAAGTACAACCTTGTCAAGGCTGTGATTGGAGAATTC
CTTCCGCTGCCGGAAATCACCTTGAATCCCGCTAAGCGTCTGGCCTACGG
AAGGGTGGAGCTGACACCCAAGCTGACACTGCTCTCGACGGAAGGACGTG
CTGCGCTCTCCAAGGGTGATCCCGTCGAATCGATCAAGCCGAAAACCTTC
GAGGAACTAGACTTGTACTCGGGCCTCGTCCTGTACGAGACCGAGCTGCC
CAGCATGGATCTAGACCCAGCCTTGCTGAAAATAGATCAAATTAACGATC
GAGCACACGTATTCGTAGACCAGGAACTGGTGGGCACACTCTCCCGCGAG
GCACAGATCTACTCGCTGCCGCTTAGCAAGGGTTGGGGCAGCACACTGCA
GCTGCTGGTGGAGAACCAAGGACGCGTCAACTTCTACATCTCCAACGACA
CGAAGGGCATCTTTGGTGAGGTGAGCCTGCAGCTGCACAATGGTGGTTAC
CTCCCGCTGGAGAACTGGCGGAGCACCGCTTTCCCGCTGGAGCAATCCGC
CGTCGAGCTCTGGCGGCGCGAACACACTGACGAGAAGGCCTTGGACCCGT
TGCTGGCAAGGCAACGCATTCTTCGAAACGGACCAATACTCTACACTGGC
AGCCTGACAGTGACGGAGGTGGGCGACACCTATTTGAACATGGCCGGTTG
GGGCAAGGGCGTGGCCTATGTGAACGGTTTTAATTTGGGACGCTACTGGC
CTGTGGCAGGTCCACAGGTCACCTTATATGTGCCCAACGAGATACTGAAA
GTGGGTGAAAACTCTCTGGTGATCCTTGAGTACCAACGAGCGAATAAGAC
AGCAACTGGCGAGGATCTACCTGCAGTGCAGTTCGACGCAGTTGCTCAGC
TGGACGGAGAGTCTGGTGATGTTCCACTTAAATGAAAGCTTTCTAGACCA
T
BS15208.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gal-RA | 2019 | CG9092-PA | 1..2019 | 17..2035 | 10095 | 100 | Plus |
Gal-RB | 2013 | CG9092-PB | 1..2013 | 17..2035 | 9970 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gal-RA | 2345 | CG9092-RA | 139..2157 | 17..2035 | 10095 | 100 | Plus |
Gal-RB | 2339 | CG9092-RB | 139..2151 | 17..2035 | 9970 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6003762..6004856 | 2035..941 | 5475 | 100 | Minus |
2L | 23513712 | 2L | 6005213..6005552 | 794..455 | 1700 | 100 | Minus |
2L | 23513712 | 2L | 6005904..6006069 | 303..138 | 830 | 100 | Minus |
2L | 23513712 | 2L | 6005685..6005836 | 455..304 | 760 | 100 | Minus |
2L | 23513712 | 2L | 6005005..6005153 | 943..795 | 745 | 100 | Minus |
2L | 23513712 | 2L | 6006566..6006689 | 140..17 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:59:55 has no hits.
BS15208.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:11 Download gff for
BS15208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gal-RA | 103..2120 | 17..2034 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:15 Download gff for
BS15208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gal-RA | 139..2156 | 17..2034 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:26 Download gff for
BS15208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gal-RA | 103..2120 | 17..2034 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:35 Download gff for
BS15208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gal-RA | 139..2156 | 17..2034 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:35 Download gff for
BS15208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6005006..6005153 | 795..942 | 100 | <- | Minus |
2L | 6005904..6006067 | 140..303 | 100 | <- | Minus |
2L | 6006567..6006689 | 17..139 | 100 | | Minus |
2L | 6003763..6004854 | 943..2034 | 100 | <- | Minus |
2L | 6005213..6005552 | 455..794 | 100 | <- | Minus |
2L | 6005686..6005836 | 304..454 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:15 Download gff for
BS15208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6003763..6004854 | 943..2034 | 100 | <- | Minus |
arm_2L | 6005006..6005153 | 795..942 | 100 | <- | Minus |
arm_2L | 6005213..6005552 | 455..794 | 100 | <- | Minus |
arm_2L | 6005686..6005836 | 304..454 | 100 | <- | Minus |
arm_2L | 6005904..6006067 | 140..303 | 100 | <- | Minus |
arm_2L | 6006567..6006689 | 17..139 | 100 | | Minus |
BS15208.3prime Sequence
591 bp (487 high quality bases) assembled on 2006-10-24
> BS15208.3prime
ATGGTCTAGAAAGCTTTCATTTAAGTGGAACATCACCAGACTCTCCGTCC
AGCTGAGCAACTGCGTCGAACTGCACTGCAGGTAGATCCTCGCCAGTTGC
TGTCTTATTCGCTCGTTGGTACTCAAGGATCACCAGAGAGTTTTCACCCA
CTTTCAGTATCTCGTTGGGCACATATAAGGTGACCTGTGGACCTGCCACA
GGCCAGTAGCGTCCCAAATTAAAACCGTTCACATAGGCCACGCCCTTGCC
CCAACCGGCCATGTTCAAATAGGTGTCGCCCACCTCCGTCACTGTCAGGC
TGCCAGTGTAGAGTATTGGTCCGTTTCGAAGAATGCGTTGCCTTGCCAGC
AACGGGTCCAAGGCCTTCTCGTCAGTGTGTTCGCGCCGCCAGAGCTCGAC
GGCGGATTGCTCCAGCGGGAAAGCGGTGCTCCGCCAGTTCTCCAGCGGGA
GGTAACCACCATTGTGCAGCTGCAGGCTCACCTCACCAAAAATGCCCTTC
GTGTCGTTGGAGATGTAAAAGTTGACGCGTCCTTGGATCTCCACCAGCAG
CTGCAGTGTGCTGCCCCCAACCCTTGCTAAGCGGCAGCGAG
BS15208.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9092-PA | 2019 | Gal-RA | 1469..2019 | 567..17 | 2680 | 99.4 | Minus |
CG9092-PA | 2019 | Gal-RA | 1446..1472 | 591..565 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:54:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gal-RB | 2339 | CG9092-RB | 1578..2151 | 591..17 | 2805 | 99.3 | Minus |
Gal-RA | 2345 | CG9092-RA | 1584..2157 | 591..17 | 2805 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:54:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6003762..6004335 | 17..591 | 2780 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:54:16 has no hits.
BS15208.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:52 Download gff for
BS15208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gal-PA | 1446..2019 | 17..591 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:11 Download gff for
BS15208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9092-PA | 1446..2019 | 17..591 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:54:13 Download gff for
BS15208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gal-RA | 1584..2168 | 7..591 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:10 Download gff for
BS15208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gal-RA | 1584..2168 | 7..591 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:10 Download gff for
BS15208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6003751..6004335 | 7..591 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:54:13 Download gff for
BS15208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6003751..6004335 | 7..591 | 98 | | Plus |
BS15208.5prime Sequence
731 bp (719 high quality bases) assembled on 2006-10-24
> BS15208.5prime
GAAGTTATCAGTCGACATGAGCGGTTGTCGTCGCAATCGAAAGCTGACGA
TGGCCGTAAGTGGATGTCTGATAATTGCTGTGATGGCCCTCACCGTTGGG
CTTTGTGTGGGACTGAGCGGTGACACCGACGCCCCCGAGGAACAGCCAAG
GTTTACGATCGACCATGAGGCCAACACCTTCATGCTGGATGGCCAGCCCT
TCCGGTACGTCTCTGGATCGTTTCACTATTTCCGCGCTGTACCCGAGTCC
TGGCGAAGTCGGTTGCGCACCATGCGAGCATCTGGTCTTAATGCTCTGGA
TACCTATGTTGAATGGTCGCTCCACAATCCGCACGATGGAGAATACAACT
GGGAGGGCATTGCGGATGTTGTCAAGTTTCTGGAGATTGCTCAGGAGGAA
GACTTCTACATCATTCTCCGCCCAGGTCCCTACATTTGTGCTGAGCGAGA
TAATGGTGGTCTTCCTCACTGGTTGTTTACCAAATACCCGTCCATCAAGA
TGCGGACCAATGACCCCAACTACATCTCAGAGGTGGGCAAGTGGTATGCG
GAGCTGATGCCACGCCTCCAGCACCTGTTCGTAGGCAACGGCGGCAAGAT
CATAATGGTGCAGGTGGAGAACGAGTACGGTGACTATGCCTGCGATCACG
ACTACCTCAACTGGCTGCGAGACGAGACGGAGAAGTATGTGTCCGGCAAG
GCGCTGCTCTTCACGGTGGACATACCCAACG
BS15208.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9092-PA | 2019 | Gal-RA | 1..715 | 17..731 | 3575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gal-RA | 2345 | CG9092-RA | 139..853 | 17..731 | 3575 | 100 | Plus |
Gal-RB | 2339 | CG9092-RB | 139..847 | 17..731 | 3475 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6005276..6005552 | 731..455 | 1385 | 100 | Minus |
2L | 23513712 | 2L | 6005904..6006069 | 303..138 | 830 | 100 | Minus |
2L | 23513712 | 2L | 6005685..6005836 | 455..304 | 760 | 100 | Minus |
2L | 23513712 | 2L | 6006566..6006689 | 140..17 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:48:12 has no hits.
BS15208.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:53 Download gff for
BS15208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gal-PA | 1..715 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:12 Download gff for
BS15208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9092-PA | 1..715 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:43 Download gff for
BS15208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gal-RA | 131..853 | 8..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:55 Download gff for
BS15208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gal-RA | 131..853 | 8..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:55 Download gff for
BS15208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6005276..6005552 | 455..731 | 100 | <- | Minus |
2L | 6005686..6005836 | 304..454 | 100 | <- | Minus |
2L | 6005904..6006067 | 140..303 | 100 | <- | Minus |
2L | 6006567..6006697 | 8..139 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:43 Download gff for
BS15208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6005276..6005552 | 455..731 | 100 | <- | Minus |
arm_2L | 6005686..6005836 | 304..454 | 100 | <- | Minus |
arm_2L | 6005904..6006067 | 140..303 | 100 | <- | Minus |
arm_2L | 6006567..6006697 | 8..139 | 96 | | Minus |
BS15208.pep Sequence
Translation from 16 to 2034
> BS15208.pep
MSGCRRNRKLTMAVSGCLIIAVMALTVGLCVGLSGDTDAPEEQPRFTIDH
EANTFMLDGQPFRYVSGSFHYFRAVPESWRSRLRTMRASGLNALDTYVEW
SLHNPHDGEYNWEGIADVVKFLEIAQEEDFYIILRPGPYICAERDNGGLP
HWLFTKYPSIKMRTNDPNYISEVGKWYAELMPRLQHLFVGNGGKIIMVQV
ENEYGDYACDHDYLNWLRDETEKYVSGKALLFTVDIPNEKMSCGKIENVF
ATTDFGIDRINEIDKIWAMLRALQPTGPLVNSEFYPGWLTHWQEQNQRRD
GQEVANALRTILSYNASVNLYMFFGGTNFGFTAGANYNLDGGIGYAADIT
SYDYDAVMDEAGGVTTKYNLVKAVIGEFLPLPEITLNPAKRLAYGRVELT
PKLTLLSTEGRAALSKGDPVESIKPKTFEELDLYSGLVLYETELPSMDLD
PALLKIDQINDRAHVFVDQELVGTLSREAQIYSLPLSKGWGSTLQLLVEN
QGRVNFYISNDTKGIFGEVSLQLHNGGYLPLENWRSTAFPLEQSAVELWR
REHTDEKALDPLLARQRILRNGPILYTGSLTVTEVGDTYLNMAGWGKGVA
YVNGFNLGRYWPVAGPQVTLYVPNEILKVGENSLVILEYQRANKTATGED
LPAVQFDAVAQLDGESGDVPLK*
BS15208.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gal-PA | 672 | CG9092-PA | 1..672 | 1..672 | 3561 | 100 | Plus |
Gal-PB | 670 | CG9092-PB | 1..670 | 1..672 | 3538 | 99.7 | Plus |
Ect3-PA | 637 | CG3132-PA | 1..617 | 23..641 | 1624 | 52 | Plus |