Clone BS15208 Report

Search the DGRC for BS15208

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptGal-RA
Protein status:BS15208.pep: full length peptide match
Sequenced Size:2051

Clone Sequence Records

BS15208.complete Sequence

2051 bp assembled on 2009-12-07

GenBank Submission: KX803954

> BS15208.complete
GAAGTTATCAGTCGACATGAGCGGTTGTCGTCGCAATCGAAAGCTGACGA
TGGCCGTAAGTGGATGTCTGATAATTGCTGTGATGGCCCTCACCGTTGGG
CTTTGTGTGGGACTGAGCGGTGACACCGACGCCCCCGAGGAACAGCCAAG
GTTTACGATCGACCATGAGGCCAACACCTTCATGCTGGATGGCCAGCCCT
TCCGGTACGTCTCTGGATCGTTTCACTATTTCCGCGCTGTACCCGAGTCC
TGGCGAAGTCGGTTGCGCACCATGCGAGCATCTGGTCTTAATGCTCTGGA
TACCTATGTTGAATGGTCGCTCCACAATCCGCACGATGGAGAATACAACT
GGGAGGGCATTGCGGATGTTGTCAAGTTTCTGGAGATTGCTCAGGAGGAA
GACTTCTACATCATTCTCCGCCCAGGTCCCTACATTTGTGCTGAGCGAGA
TAATGGTGGTCTTCCTCACTGGTTGTTTACCAAATACCCGTCCATCAAGA
TGCGGACCAATGACCCCAACTACATCTCAGAGGTGGGCAAGTGGTATGCG
GAGCTGATGCCACGCCTCCAGCACCTGTTCGTAGGCAACGGCGGCAAGAT
CATAATGGTGCAGGTGGAGAACGAGTACGGTGACTATGCCTGCGATCACG
ACTACCTCAACTGGCTGCGAGACGAGACGGAGAAGTATGTGTCCGGCAAG
GCGCTGCTCTTCACGGTGGACATACCCAACGAGAAGATGAGCTGTGGAAA
GATCGAGAACGTGTTCGCCACCACTGACTTCGGCATCGATCGCATCAATG
AGATTGACAAAATCTGGGCAATGCTGCGTGCCCTGCAGCCGACTGGCCCA
CTGGTCAACTCGGAGTTCTATCCCGGCTGGCTAACGCATTGGCAGGAGCA
GAACCAAAGGCGTGATGGCCAGGAGGTAGCCAATGCACTAAGGACAATTC
TGAGCTACAACGCTAGTGTTAACCTCTATATGTTCTTTGGCGGCACAAAC
TTTGGGTTCACTGCTGGTGCCAACTATAATCTGGACGGTGGCATCGGATA
TGCGGCAGACATAACCAGCTACGACTACGATGCAGTGATGGACGAGGCCG
GTGGCGTCACCACTAAGTACAACCTTGTCAAGGCTGTGATTGGAGAATTC
CTTCCGCTGCCGGAAATCACCTTGAATCCCGCTAAGCGTCTGGCCTACGG
AAGGGTGGAGCTGACACCCAAGCTGACACTGCTCTCGACGGAAGGACGTG
CTGCGCTCTCCAAGGGTGATCCCGTCGAATCGATCAAGCCGAAAACCTTC
GAGGAACTAGACTTGTACTCGGGCCTCGTCCTGTACGAGACCGAGCTGCC
CAGCATGGATCTAGACCCAGCCTTGCTGAAAATAGATCAAATTAACGATC
GAGCACACGTATTCGTAGACCAGGAACTGGTGGGCACACTCTCCCGCGAG
GCACAGATCTACTCGCTGCCGCTTAGCAAGGGTTGGGGCAGCACACTGCA
GCTGCTGGTGGAGAACCAAGGACGCGTCAACTTCTACATCTCCAACGACA
CGAAGGGCATCTTTGGTGAGGTGAGCCTGCAGCTGCACAATGGTGGTTAC
CTCCCGCTGGAGAACTGGCGGAGCACCGCTTTCCCGCTGGAGCAATCCGC
CGTCGAGCTCTGGCGGCGCGAACACACTGACGAGAAGGCCTTGGACCCGT
TGCTGGCAAGGCAACGCATTCTTCGAAACGGACCAATACTCTACACTGGC
AGCCTGACAGTGACGGAGGTGGGCGACACCTATTTGAACATGGCCGGTTG
GGGCAAGGGCGTGGCCTATGTGAACGGTTTTAATTTGGGACGCTACTGGC
CTGTGGCAGGTCCACAGGTCACCTTATATGTGCCCAACGAGATACTGAAA
GTGGGTGAAAACTCTCTGGTGATCCTTGAGTACCAACGAGCGAATAAGAC
AGCAACTGGCGAGGATCTACCTGCAGTGCAGTTCGACGCAGTTGCTCAGC
TGGACGGAGAGTCTGGTGATGTTCCACTTAAATGAAAGCTTTCTAGACCA
T

BS15208.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Gal-RA 2019 CG9092-PA 1..2019 17..2035 10095 100 Plus
Gal-RB 2013 CG9092-PB 1..2013 17..2035 9970 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
Gal-RA 2345 CG9092-RA 139..2157 17..2035 10095 100 Plus
Gal-RB 2339 CG9092-RB 139..2151 17..2035 9970 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6003762..6004856 2035..941 5475 100 Minus
2L 23513712 2L 6005213..6005552 794..455 1700 100 Minus
2L 23513712 2L 6005904..6006069 303..138 830 100 Minus
2L 23513712 2L 6005685..6005836 455..304 760 100 Minus
2L 23513712 2L 6005005..6005153 943..795 745 100 Minus
2L 23513712 2L 6006566..6006689 140..17 620 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:59:55 has no hits.

BS15208.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:11 Download gff for BS15208.complete
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 103..2120 17..2034 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:15 Download gff for BS15208.complete
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 139..2156 17..2034 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:26 Download gff for BS15208.complete
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 103..2120 17..2034 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:35 Download gff for BS15208.complete
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 139..2156 17..2034 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:35 Download gff for BS15208.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6005006..6005153 795..942 100 <- Minus
2L 6005904..6006067 140..303 100 <- Minus
2L 6006567..6006689 17..139 100   Minus
2L 6003763..6004854 943..2034 100 <- Minus
2L 6005213..6005552 455..794 100 <- Minus
2L 6005686..6005836 304..454 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:15 Download gff for BS15208.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6003763..6004854 943..2034 100 <- Minus
arm_2L 6005006..6005153 795..942 100 <- Minus
arm_2L 6005213..6005552 455..794 100 <- Minus
arm_2L 6005686..6005836 304..454 100 <- Minus
arm_2L 6005904..6006067 140..303 100 <- Minus
arm_2L 6006567..6006689 17..139 100   Minus

BS15208.3prime Sequence

591 bp (487 high quality bases) assembled on 2006-10-24

> BS15208.3prime
ATGGTCTAGAAAGCTTTCATTTAAGTGGAACATCACCAGACTCTCCGTCC
AGCTGAGCAACTGCGTCGAACTGCACTGCAGGTAGATCCTCGCCAGTTGC
TGTCTTATTCGCTCGTTGGTACTCAAGGATCACCAGAGAGTTTTCACCCA
CTTTCAGTATCTCGTTGGGCACATATAAGGTGACCTGTGGACCTGCCACA
GGCCAGTAGCGTCCCAAATTAAAACCGTTCACATAGGCCACGCCCTTGCC
CCAACCGGCCATGTTCAAATAGGTGTCGCCCACCTCCGTCACTGTCAGGC
TGCCAGTGTAGAGTATTGGTCCGTTTCGAAGAATGCGTTGCCTTGCCAGC
AACGGGTCCAAGGCCTTCTCGTCAGTGTGTTCGCGCCGCCAGAGCTCGAC
GGCGGATTGCTCCAGCGGGAAAGCGGTGCTCCGCCAGTTCTCCAGCGGGA
GGTAACCACCATTGTGCAGCTGCAGGCTCACCTCACCAAAAATGCCCTTC
GTGTCGTTGGAGATGTAAAAGTTGACGCGTCCTTGGATCTCCACCAGCAG
CTGCAGTGTGCTGCCCCCAACCCTTGCTAAGCGGCAGCGAG

BS15208.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9092-PA 2019 Gal-RA 1469..2019 567..17 2680 99.4 Minus
CG9092-PA 2019 Gal-RA 1446..1472 591..565 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Gal-RB 2339 CG9092-RB 1578..2151 591..17 2805 99.3 Minus
Gal-RA 2345 CG9092-RA 1584..2157 591..17 2805 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6003762..6004335 17..591 2780 99.3 Plus
Blast to na_te.dros performed on 2015-02-13 05:54:16 has no hits.

BS15208.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:52 Download gff for BS15208.3prime
Subject Subject Range Query Range Percent Splice Strand
Gal-PA 1446..2019 17..591 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:11 Download gff for BS15208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9092-PA 1446..2019 17..591 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:54:13 Download gff for BS15208.3prime
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 1584..2168 7..591 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:10 Download gff for BS15208.3prime
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 1584..2168 7..591 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:10 Download gff for BS15208.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6003751..6004335 7..591 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:54:13 Download gff for BS15208.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6003751..6004335 7..591 98   Plus

BS15208.5prime Sequence

731 bp (719 high quality bases) assembled on 2006-10-24

> BS15208.5prime
GAAGTTATCAGTCGACATGAGCGGTTGTCGTCGCAATCGAAAGCTGACGA
TGGCCGTAAGTGGATGTCTGATAATTGCTGTGATGGCCCTCACCGTTGGG
CTTTGTGTGGGACTGAGCGGTGACACCGACGCCCCCGAGGAACAGCCAAG
GTTTACGATCGACCATGAGGCCAACACCTTCATGCTGGATGGCCAGCCCT
TCCGGTACGTCTCTGGATCGTTTCACTATTTCCGCGCTGTACCCGAGTCC
TGGCGAAGTCGGTTGCGCACCATGCGAGCATCTGGTCTTAATGCTCTGGA
TACCTATGTTGAATGGTCGCTCCACAATCCGCACGATGGAGAATACAACT
GGGAGGGCATTGCGGATGTTGTCAAGTTTCTGGAGATTGCTCAGGAGGAA
GACTTCTACATCATTCTCCGCCCAGGTCCCTACATTTGTGCTGAGCGAGA
TAATGGTGGTCTTCCTCACTGGTTGTTTACCAAATACCCGTCCATCAAGA
TGCGGACCAATGACCCCAACTACATCTCAGAGGTGGGCAAGTGGTATGCG
GAGCTGATGCCACGCCTCCAGCACCTGTTCGTAGGCAACGGCGGCAAGAT
CATAATGGTGCAGGTGGAGAACGAGTACGGTGACTATGCCTGCGATCACG
ACTACCTCAACTGGCTGCGAGACGAGACGGAGAAGTATGTGTCCGGCAAG
GCGCTGCTCTTCACGGTGGACATACCCAACG

BS15208.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9092-PA 2019 Gal-RA 1..715 17..731 3575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Gal-RA 2345 CG9092-RA 139..853 17..731 3575 100 Plus
Gal-RB 2339 CG9092-RB 139..847 17..731 3475 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6005276..6005552 731..455 1385 100 Minus
2L 23513712 2L 6005904..6006069 303..138 830 100 Minus
2L 23513712 2L 6005685..6005836 455..304 760 100 Minus
2L 23513712 2L 6006566..6006689 140..17 620 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:48:12 has no hits.

BS15208.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:53 Download gff for BS15208.5prime
Subject Subject Range Query Range Percent Splice Strand
Gal-PA 1..715 17..731 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:12 Download gff for BS15208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9092-PA 1..715 17..731 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:43 Download gff for BS15208.5prime
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 131..853 8..731 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:55 Download gff for BS15208.5prime
Subject Subject Range Query Range Percent Splice Strand
Gal-RA 131..853 8..731 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:55 Download gff for BS15208.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6005276..6005552 455..731 100 <- Minus
2L 6005686..6005836 304..454 100 <- Minus
2L 6005904..6006067 140..303 100 <- Minus
2L 6006567..6006697 8..139 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:43 Download gff for BS15208.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6005276..6005552 455..731 100 <- Minus
arm_2L 6005686..6005836 304..454 100 <- Minus
arm_2L 6005904..6006067 140..303 100 <- Minus
arm_2L 6006567..6006697 8..139 96   Minus

BS15208.pep Sequence

Translation from 16 to 2034

> BS15208.pep
MSGCRRNRKLTMAVSGCLIIAVMALTVGLCVGLSGDTDAPEEQPRFTIDH
EANTFMLDGQPFRYVSGSFHYFRAVPESWRSRLRTMRASGLNALDTYVEW
SLHNPHDGEYNWEGIADVVKFLEIAQEEDFYIILRPGPYICAERDNGGLP
HWLFTKYPSIKMRTNDPNYISEVGKWYAELMPRLQHLFVGNGGKIIMVQV
ENEYGDYACDHDYLNWLRDETEKYVSGKALLFTVDIPNEKMSCGKIENVF
ATTDFGIDRINEIDKIWAMLRALQPTGPLVNSEFYPGWLTHWQEQNQRRD
GQEVANALRTILSYNASVNLYMFFGGTNFGFTAGANYNLDGGIGYAADIT
SYDYDAVMDEAGGVTTKYNLVKAVIGEFLPLPEITLNPAKRLAYGRVELT
PKLTLLSTEGRAALSKGDPVESIKPKTFEELDLYSGLVLYETELPSMDLD
PALLKIDQINDRAHVFVDQELVGTLSREAQIYSLPLSKGWGSTLQLLVEN
QGRVNFYISNDTKGIFGEVSLQLHNGGYLPLENWRSTAFPLEQSAVELWR
REHTDEKALDPLLARQRILRNGPILYTGSLTVTEVGDTYLNMAGWGKGVA
YVNGFNLGRYWPVAGPQVTLYVPNEILKVGENSLVILEYQRANKTATGED
LPAVQFDAVAQLDGESGDVPLK*

BS15208.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Gal-PA 672 CG9092-PA 1..672 1..672 3561 100 Plus
Gal-PB 670 CG9092-PB 1..670 1..672 3538 99.7 Plus
Ect3-PA 637 CG3132-PA 1..617 23..641 1624 52 Plus