Clone BS15211 Report

Search the DGRC for BS15211

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:11
Vector:pDNR-Dual
Associated Gene/Transcriptwat-RA
Protein status:BS15211.pep: full length peptide match
Sequenced Size:1586

Clone Sequence Records

BS15211.complete Sequence

1586 bp assembled on 2009-12-07

GenBank Submission: KX804275

> BS15211.complete
GAAGTTATCAGTCGACATGGATGATCCCAAAATAATGAACATTATGAACG
GCATGAAGTCGCTGGAAGATCATTGTCAGCTCATAAGCGACGTCAAGGAC
GAGTCGCCCATGCAAATGTTCTACAAGGACAAGGGCGTCTTCCTCACTGG
CGGCACCGGATTCTTTGGCAAAATTATCATCGAGAAATTGCTGCGCGTCA
CGGAGGTGGGACAAATCTATTTGCTGATACGCACCAAGAAGGGCAAGGAT
GCCTTCGCCAGGATCGAGGATCTGTTTAACGATCCGGTCTTTGCCAAGAT
GAAGCAGGTGAATCCCAAGTACCGCTGCCAGATCACCATCATCAGTGGCG
ACTGCTCGCTGCCTGGACTGGGAATCAGTGCCGACGAGCGGGAGACCATC
ATGGAGAACGTCAACATCGTCCTGCACAGTGCGGCCACAGTGCGATTCGA
TGAGAAGCTCAAAATGGCCATCGCCATCAATGTGCACGGCACTAAGGAAA
TCATCAAGCTGGCCAAAGAGATTGTTAACTTGAAGGCTCTCGTCCACGTC
TCTACAGCATTTGCACACTGCAACATGCGGCACATCCAGGAGAGATTCTA
CAGTGGCACCATGTCTGGCGAGAACGCCTTCAAGCTGAGCGAGTGCCTCG
ATGAGCACACCCTGAACACCCTTACGCCGACCATCATCAAGGGATATCCG
AACACATACACCTTCACCAAAGTCCTGGCCGAGAATGTCGTGCAACAGAG
CGCTCAGAATTTGCCAGTTACTATCTTCAGACCCGGCATTGTGATCACCA
CTTACCGCGAACCGGTCACTGGCTGGATCGACAACATGTACGGTCCGTGC
GGAGTGATCGTGGGAATTGGATCCGGAGTGCTGCGGGTTTTCACGGGTGA
CATGGACAACAAGGCACACATTGTTCCCGTGGACATGTGTGTAAATGCTC
TGTTAGCCAGTGCGTGGGATATAGCGCGAAACAAATACGAGACTCCGCCG
ATTTACAACTACGTGCCGGATGCAGAGAACATGGTCACCTGGCGGCGCTA
CATGGAGGATGGCTTCGAGTACGGCTGTGACATCCCGATGCGGAAGTCCA
TCTGGTATCCGCGCTTCACCATCGTGCCGCACATGTGGCAGTACCACATC
CTGTGCTTCCTCTACCACACATTGCCCGCCCTGGTCATGGACGCCATCAT
GGTGATAATTGGCAAGAAACCCAGAATGATGAAGATCTATCGCAAGATCC
ACAAGCTAAGCAATGTCCTCAAGTACTTCAGTTCAAACGAATTTCGATTT
GACAACGATAATGTTAGGAAACTTACGGAAAAGCTAGATGATCGGGATAA
GCGGCTCTTCGCCTTCGATATGCGCGATCTGGACTGGACCAATCTGTTCC
GCGTCAGTCTCTACGGACTGCGTCTGTATGTGGTCAAGGATGATCCCAGC
AACATTCCCGAGTCCATCAAGCGCTACGAGAGATTGAAGGTCCTGCACTA
TACGACACTGGCTGTTTTCTACGCGTTAGCTGCCTGGGCGCTCTATGCCC
TGCTCAAGCTATTCTTATAGAAGCTTTCTAGACCAT

BS15211.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
wat-RA 1554 CG1443-PA 1..1554 17..1570 7770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
wat-RA 2274 CG1443-RA 409..1966 13..1570 7775 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28993432..28993692 1482..1222 1305 100 Minus
3R 32079331 3R 28994603..28994860 791..534 1290 100 Minus
3R 32079331 3R 28994935..28995185 536..286 1255 100 Minus
3R 32079331 3R 28993750..28993993 1224..981 1205 99.6 Minus
3R 32079331 3R 28994055..28994248 984..791 970 100 Minus
3R 32079331 3R 28995260..28995374 288..174 575 100 Minus
3R 32079331 3R 28993285..28993374 1570..1481 450 100 Minus
3R 32079331 3R 28997635..28997720 98..13 415 98.8 Minus
3R 32079331 3R 28995466..28995541 173..98 380 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:54:20 has no hits.

BS15211.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:59 Download gff for BS15211.complete
Subject Subject Range Query Range Percent Splice Strand
CG1443-RA 413..1966 17..1570 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:04 Download gff for BS15211.complete
Subject Subject Range Query Range Percent Splice Strand
CG1443-RA 413..1966 17..1570 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:25 Download gff for BS15211.complete
Subject Subject Range Query Range Percent Splice Strand
CG1443-RA 413..1966 17..1570 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:37 Download gff for BS15211.complete
Subject Subject Range Query Range Percent Splice Strand
wat-RA 413..1966 17..1570 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:37 Download gff for BS15211.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28993285..28993372 1483..1570 100 <- Minus
3R 28993432..28993689 1225..1482 100 <- Minus
3R 28993750..28993989 985..1224 100 <- Minus
3R 28994055..28994247 792..984 100 <- Minus
3R 28994603..28994858 536..791 100 <- Minus
3R 28994936..28995184 287..535 100 <- Minus
3R 28995262..28995374 174..286 100 <- Minus
3R 28995466..28995540 99..173 100 <- Minus
3R 28997635..28997716 17..98 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:04 Download gff for BS15211.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24819777..24819969 792..984 100 <- Minus
arm_3R 24820325..24820580 536..791 100 <- Minus
arm_3R 24819007..24819094 1483..1570 100 <- Minus
arm_3R 24819154..24819411 1225..1482 100 <- Minus
arm_3R 24819472..24819711 985..1224 100 <- Minus
arm_3R 24820658..24820906 287..535 100 <- Minus
arm_3R 24820984..24821096 174..286 100 <- Minus
arm_3R 24821188..24821262 99..173 100 <- Minus
arm_3R 24823357..24823438 17..98 100   Minus

BS15211.3prime Sequence

710 bp (618 high quality bases) assembled on 2006-10-24

> BS15211.3prime
ATGGTCTAGAAAGCTTCTATAAGAATAGCTTGAGCAGGGCATAGAGCGCC
CAGGCAGCTAACGCGTAGAAAACAGCCAGTGTCGTATAGTGCAGGACCTT
CAATCTCTCGTAGCGCTTGATGGACTCGGGAATGTTGCTGGGATCATCCT
TGACCACATACAGACGCAGTCCGTAGAGACTGACGCGGAACAGATTGGTC
CAGTCCAGATCGCGCATATCGAAGGCGAAGAGCCGCTTATCCCGATCATC
TAGCTTTTCCGTAAGTTTCCTAACATTATCGTTGTCAAATCGAAATTCGT
TTGAACTGAAGTACTTGAGGACATTGCTTAGCTTGTGGATCTTGCGATAG
ATCTTCATCATTCTGGGTTTCTTGCCAATTATCACCATGATGGCGTCCAT
GACCAGGGCGGGCAATGTGTGGTAGAGGAAGCACAGGATGTGGTACTGCC
ACATGTGCGGCACGATGGTGAAGCGCGGATACCAGATGGACTTCCGCATC
GGGATGTCACAGCCGTACTCGAAGCCATCCTCCATGTAGCGCCGCCAGGT
GACCATGTTCTCTGCATCCGGCACGTAGTTGTAAATCGGCGGAGTCTCGT
ATTTGTTTCGCGCTATATCCCACGCACTGGCTAACAGAGCATTTACACAC
ATGTCCACGGGAACAATGTGGGCCTTGTTGTCCATGTCACCCGTGAAAAC
CCGCAGCACT

BS15211.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1443-PA 1554 CG1443-RA 861..1554 710..17 3445 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
wat-RA 2274 CG1443-RA 1273..1966 710..17 3455 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28993432..28993692 105..365 1305 100 Plus
3R 32079331 3R 28993750..28993993 363..606 1205 99.6 Plus
3R 32079331 3R 28994055..28994162 603..710 525 99.1 Plus
3R 32079331 3R 28993285..28993374 17..106 450 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:24:42 has no hits.

BS15211.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:59 Download gff for BS15211.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1443-PA 861..1554 17..710 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:20 Download gff for BS15211.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1443-PA 861..1554 17..710 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:21:44 Download gff for BS15211.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1443-RA 1273..1977 4..710 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:51 Download gff for BS15211.3prime
Subject Subject Range Query Range Percent Splice Strand
wat-RA 1273..1977 4..710 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:51 Download gff for BS15211.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28993274..28993372 4..104 95 <- Plus
3R 28993432..28993689 105..362 100 <- Plus
3R 28993750..28993989 363..602 100 <- Plus
3R 28994055..28994162 603..710 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:21:44 Download gff for BS15211.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24818996..24819094 4..104 95 <- Plus
arm_3R 24819154..24819411 105..362 100 <- Plus
arm_3R 24819472..24819711 363..602 100 <- Plus
arm_3R 24819777..24819884 603..710 99   Plus

BS15211.5prime Sequence

865 bp (725 high quality bases) assembled on 2006-10-24

> BS15211.5prime
GAAGTTATCAGTCGACATGGATGATCCCAAAATAATGAACATTATGAACG
GCATGAAGTCGCTGGAAGATCATTGTCAGCTCATAAGCGACGTCAAGGAC
GAGTCGCCCATGCAAATGTTCTACAAGGACAAGGGCGTCTTCCTCACTGG
CGGCACCGGATTCTTTGGCAAAATTATCATCGAGAAATTGCTGCGCGTCA
CGGAGGTGGGACAAATCTATTTGCTGATACGCACCAAGAAGGGCAAGGAT
GCCTTCGCCAGGATCGAGGATCTGTTTAACGATCCGGTCTTTGCCAAGAT
GAAGCAGGTGAATCCCAAGTACCGCTGCCAGATCACCATCATCAGTGGCG
ACTGCTCGCTGCCTGGACTGGGAATCAGTGCCGACGAGCGGGAGACCATC
ATGGAGAACGTCAACATCGTCCTGCACAGTGCGGCCACAGTGCGATTCGA
TGAGAAGCTCAAAATGGCCATCGCCATCAATGTGCACGGCACTAAGGAAA
TCATCAAGCTGGCCAAAGAGATTGTTAACTTGAAGGCTCTCGTCCACGTC
TCTACAGCATTTGCACACTGCAACATGCGGCACATCCAGGAGAGATTCTA
CAGTGGCACCATGTCTGGCGAGAACGCCTTCAAGCTGAGCGAGTGCCTCG
ATGAGCACACCCTGAACACCCTTACGCCGACCATCATCAAGGGATATCCG
AACACATACACCTTCACCAAAGTCCTGGCCGAGAATGTCGTGCAACAGAG
CGCTCAGAATTTGCCAGTTACTATCTTCAGACCCGGCATTGTGATCACCA
CTTACCGCGAACCGGTCACTGGCTGGATCGACAACATGTACGGTCCGTGC
GGAGTGATCGTGGGA

BS15211.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1443-PA 1554 CG1443-RA 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
wat-RA 2274 CG1443-RA 400..1261 5..865 4255 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28994603..28994860 791..534 1290 100 Minus
3R 32079331 3R 28994935..28995185 536..286 1255 100 Minus
3R 32079331 3R 28995260..28995374 288..174 575 100 Minus
3R 32079331 3R 28997635..28997720 98..13 415 98.8 Minus
3R 32079331 3R 28995466..28995541 173..98 380 100 Minus
3R 32079331 3R 28994174..28994248 865..791 375 100 Minus
Blast to na_te.dros performed on 2015-01-30 16:56:28 has no hits.

BS15211.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:00 Download gff for BS15211.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1443-PA 1..848 17..864 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:22 Download gff for BS15211.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1443-PA 1..848 17..864 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:00:11 Download gff for BS15211.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1443-RA 400..1260 5..864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:24:22 Download gff for BS15211.5prime
Subject Subject Range Query Range Percent Splice Strand
wat-RA 400..1260 5..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:24:22 Download gff for BS15211.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28994175..28994247 792..864 100 <- Minus
3R 28994603..28994858 536..791 100 <- Minus
3R 28994936..28995184 287..535 100 <- Minus
3R 28995262..28995374 174..286 100 <- Minus
3R 28995466..28995540 99..173 100 <- Minus
3R 28997635..28997729 5..98 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:00:11 Download gff for BS15211.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24819897..24819969 792..864 100 <- Minus
arm_3R 24820325..24820580 536..791 100 <- Minus
arm_3R 24820658..24820906 287..535 100 <- Minus
arm_3R 24820984..24821096 174..286 100 <- Minus
arm_3R 24821188..24821262 99..173 100 <- Minus
arm_3R 24823357..24823451 5..98 96   Minus

BS15211.pep Sequence

Translation from 16 to 1569

> BS15211.pep
MDDPKIMNIMNGMKSLEDHCQLISDVKDESPMQMFYKDKGVFLTGGTGFF
GKIIIEKLLRVTEVGQIYLLIRTKKGKDAFARIEDLFNDPVFAKMKQVNP
KYRCQITIISGDCSLPGLGISADERETIMENVNIVLHSAATVRFDEKLKM
AIAINVHGTKEIIKLAKEIVNLKALVHVSTAFAHCNMRHIQERFYSGTMS
GENAFKLSECLDEHTLNTLTPTIIKGYPNTYTFTKVLAENVVQQSAQNLP
VTIFRPGIVITTYREPVTGWIDNMYGPCGVIVGIGSGVLRVFTGDMDNKA
HIVPVDMCVNALLASAWDIARNKYETPPIYNYVPDAENMVTWRRYMEDGF
EYGCDIPMRKSIWYPRFTIVPHMWQYHILCFLYHTLPALVMDAIMVIIGK
KPRMMKIYRKIHKLSNVLKYFSSNEFRFDNDNVRKLTEKLDDRDKRLFAF
DMRDLDWTNLFRVSLYGLRLYVVKDDPSNIPESIKRYERLKVLHYTTLAV
FYALAAWALYALLKLFL*

BS15211.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
wat-PA 517 CG1443-PA 1..517 1..517 2725 100 Plus
CG14893-PB 510 CG14893-PB 6..510 22..517 1077 41.2 Plus
CG17560-PA 499 CG17560-PA 2..497 29..515 1047 41.5 Plus
CG10096-PD 502 CG10096-PD 5..498 32..517 1022 40.1 Plus
CG10096-PB 502 CG10096-PB 5..498 32..517 1022 40.1 Plus