Clone Sequence Records
BS15211.complete Sequence
1586 bp assembled on 2009-12-07
GenBank Submission: KX804275
> BS15211.complete
GAAGTTATCAGTCGACATGGATGATCCCAAAATAATGAACATTATGAACG
GCATGAAGTCGCTGGAAGATCATTGTCAGCTCATAAGCGACGTCAAGGAC
GAGTCGCCCATGCAAATGTTCTACAAGGACAAGGGCGTCTTCCTCACTGG
CGGCACCGGATTCTTTGGCAAAATTATCATCGAGAAATTGCTGCGCGTCA
CGGAGGTGGGACAAATCTATTTGCTGATACGCACCAAGAAGGGCAAGGAT
GCCTTCGCCAGGATCGAGGATCTGTTTAACGATCCGGTCTTTGCCAAGAT
GAAGCAGGTGAATCCCAAGTACCGCTGCCAGATCACCATCATCAGTGGCG
ACTGCTCGCTGCCTGGACTGGGAATCAGTGCCGACGAGCGGGAGACCATC
ATGGAGAACGTCAACATCGTCCTGCACAGTGCGGCCACAGTGCGATTCGA
TGAGAAGCTCAAAATGGCCATCGCCATCAATGTGCACGGCACTAAGGAAA
TCATCAAGCTGGCCAAAGAGATTGTTAACTTGAAGGCTCTCGTCCACGTC
TCTACAGCATTTGCACACTGCAACATGCGGCACATCCAGGAGAGATTCTA
CAGTGGCACCATGTCTGGCGAGAACGCCTTCAAGCTGAGCGAGTGCCTCG
ATGAGCACACCCTGAACACCCTTACGCCGACCATCATCAAGGGATATCCG
AACACATACACCTTCACCAAAGTCCTGGCCGAGAATGTCGTGCAACAGAG
CGCTCAGAATTTGCCAGTTACTATCTTCAGACCCGGCATTGTGATCACCA
CTTACCGCGAACCGGTCACTGGCTGGATCGACAACATGTACGGTCCGTGC
GGAGTGATCGTGGGAATTGGATCCGGAGTGCTGCGGGTTTTCACGGGTGA
CATGGACAACAAGGCACACATTGTTCCCGTGGACATGTGTGTAAATGCTC
TGTTAGCCAGTGCGTGGGATATAGCGCGAAACAAATACGAGACTCCGCCG
ATTTACAACTACGTGCCGGATGCAGAGAACATGGTCACCTGGCGGCGCTA
CATGGAGGATGGCTTCGAGTACGGCTGTGACATCCCGATGCGGAAGTCCA
TCTGGTATCCGCGCTTCACCATCGTGCCGCACATGTGGCAGTACCACATC
CTGTGCTTCCTCTACCACACATTGCCCGCCCTGGTCATGGACGCCATCAT
GGTGATAATTGGCAAGAAACCCAGAATGATGAAGATCTATCGCAAGATCC
ACAAGCTAAGCAATGTCCTCAAGTACTTCAGTTCAAACGAATTTCGATTT
GACAACGATAATGTTAGGAAACTTACGGAAAAGCTAGATGATCGGGATAA
GCGGCTCTTCGCCTTCGATATGCGCGATCTGGACTGGACCAATCTGTTCC
GCGTCAGTCTCTACGGACTGCGTCTGTATGTGGTCAAGGATGATCCCAGC
AACATTCCCGAGTCCATCAAGCGCTACGAGAGATTGAAGGTCCTGCACTA
TACGACACTGGCTGTTTTCTACGCGTTAGCTGCCTGGGCGCTCTATGCCC
TGCTCAAGCTATTCTTATAGAAGCTTTCTAGACCAT
BS15211.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wat-RA | 1554 | CG1443-PA | 1..1554 | 17..1570 | 7770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wat-RA | 2274 | CG1443-RA | 409..1966 | 13..1570 | 7775 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28993432..28993692 | 1482..1222 | 1305 | 100 | Minus |
3R | 32079331 | 3R | 28994603..28994860 | 791..534 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 28994935..28995185 | 536..286 | 1255 | 100 | Minus |
3R | 32079331 | 3R | 28993750..28993993 | 1224..981 | 1205 | 99.6 | Minus |
3R | 32079331 | 3R | 28994055..28994248 | 984..791 | 970 | 100 | Minus |
3R | 32079331 | 3R | 28995260..28995374 | 288..174 | 575 | 100 | Minus |
3R | 32079331 | 3R | 28993285..28993374 | 1570..1481 | 450 | 100 | Minus |
3R | 32079331 | 3R | 28997635..28997720 | 98..13 | 415 | 98.8 | Minus |
3R | 32079331 | 3R | 28995466..28995541 | 173..98 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:54:20 has no hits.
BS15211.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:59 Download gff for
BS15211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1443-RA | 413..1966 | 17..1570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:04 Download gff for
BS15211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1443-RA | 413..1966 | 17..1570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:25 Download gff for
BS15211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1443-RA | 413..1966 | 17..1570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:37 Download gff for
BS15211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wat-RA | 413..1966 | 17..1570 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:37 Download gff for
BS15211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28993285..28993372 | 1483..1570 | 100 | <- | Minus |
3R | 28993432..28993689 | 1225..1482 | 100 | <- | Minus |
3R | 28993750..28993989 | 985..1224 | 100 | <- | Minus |
3R | 28994055..28994247 | 792..984 | 100 | <- | Minus |
3R | 28994603..28994858 | 536..791 | 100 | <- | Minus |
3R | 28994936..28995184 | 287..535 | 100 | <- | Minus |
3R | 28995262..28995374 | 174..286 | 100 | <- | Minus |
3R | 28995466..28995540 | 99..173 | 100 | <- | Minus |
3R | 28997635..28997716 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:04 Download gff for
BS15211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24819777..24819969 | 792..984 | 100 | <- | Minus |
arm_3R | 24820325..24820580 | 536..791 | 100 | <- | Minus |
arm_3R | 24819007..24819094 | 1483..1570 | 100 | <- | Minus |
arm_3R | 24819154..24819411 | 1225..1482 | 100 | <- | Minus |
arm_3R | 24819472..24819711 | 985..1224 | 100 | <- | Minus |
arm_3R | 24820658..24820906 | 287..535 | 100 | <- | Minus |
arm_3R | 24820984..24821096 | 174..286 | 100 | <- | Minus |
arm_3R | 24821188..24821262 | 99..173 | 100 | <- | Minus |
arm_3R | 24823357..24823438 | 17..98 | 100 | | Minus |
BS15211.3prime Sequence
710 bp (618 high quality bases) assembled on 2006-10-24
> BS15211.3prime
ATGGTCTAGAAAGCTTCTATAAGAATAGCTTGAGCAGGGCATAGAGCGCC
CAGGCAGCTAACGCGTAGAAAACAGCCAGTGTCGTATAGTGCAGGACCTT
CAATCTCTCGTAGCGCTTGATGGACTCGGGAATGTTGCTGGGATCATCCT
TGACCACATACAGACGCAGTCCGTAGAGACTGACGCGGAACAGATTGGTC
CAGTCCAGATCGCGCATATCGAAGGCGAAGAGCCGCTTATCCCGATCATC
TAGCTTTTCCGTAAGTTTCCTAACATTATCGTTGTCAAATCGAAATTCGT
TTGAACTGAAGTACTTGAGGACATTGCTTAGCTTGTGGATCTTGCGATAG
ATCTTCATCATTCTGGGTTTCTTGCCAATTATCACCATGATGGCGTCCAT
GACCAGGGCGGGCAATGTGTGGTAGAGGAAGCACAGGATGTGGTACTGCC
ACATGTGCGGCACGATGGTGAAGCGCGGATACCAGATGGACTTCCGCATC
GGGATGTCACAGCCGTACTCGAAGCCATCCTCCATGTAGCGCCGCCAGGT
GACCATGTTCTCTGCATCCGGCACGTAGTTGTAAATCGGCGGAGTCTCGT
ATTTGTTTCGCGCTATATCCCACGCACTGGCTAACAGAGCATTTACACAC
ATGTCCACGGGAACAATGTGGGCCTTGTTGTCCATGTCACCCGTGAAAAC
CCGCAGCACT
BS15211.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1443-PA | 1554 | CG1443-RA | 861..1554 | 710..17 | 3445 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wat-RA | 2274 | CG1443-RA | 1273..1966 | 710..17 | 3455 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:24:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28993432..28993692 | 105..365 | 1305 | 100 | Plus |
3R | 32079331 | 3R | 28993750..28993993 | 363..606 | 1205 | 99.6 | Plus |
3R | 32079331 | 3R | 28994055..28994162 | 603..710 | 525 | 99.1 | Plus |
3R | 32079331 | 3R | 28993285..28993374 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:24:42 has no hits.
BS15211.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:19:59 Download gff for
BS15211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1443-PA | 861..1554 | 17..710 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:20 Download gff for
BS15211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1443-PA | 861..1554 | 17..710 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:21:44 Download gff for
BS15211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1443-RA | 1273..1977 | 4..710 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:51 Download gff for
BS15211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wat-RA | 1273..1977 | 4..710 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:51 Download gff for
BS15211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28993274..28993372 | 4..104 | 95 | <- | Plus |
3R | 28993432..28993689 | 105..362 | 100 | <- | Plus |
3R | 28993750..28993989 | 363..602 | 100 | <- | Plus |
3R | 28994055..28994162 | 603..710 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:21:44 Download gff for
BS15211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24818996..24819094 | 4..104 | 95 | <- | Plus |
arm_3R | 24819154..24819411 | 105..362 | 100 | <- | Plus |
arm_3R | 24819472..24819711 | 363..602 | 100 | <- | Plus |
arm_3R | 24819777..24819884 | 603..710 | 99 | | Plus |
BS15211.5prime Sequence
865 bp (725 high quality bases) assembled on 2006-10-24
> BS15211.5prime
GAAGTTATCAGTCGACATGGATGATCCCAAAATAATGAACATTATGAACG
GCATGAAGTCGCTGGAAGATCATTGTCAGCTCATAAGCGACGTCAAGGAC
GAGTCGCCCATGCAAATGTTCTACAAGGACAAGGGCGTCTTCCTCACTGG
CGGCACCGGATTCTTTGGCAAAATTATCATCGAGAAATTGCTGCGCGTCA
CGGAGGTGGGACAAATCTATTTGCTGATACGCACCAAGAAGGGCAAGGAT
GCCTTCGCCAGGATCGAGGATCTGTTTAACGATCCGGTCTTTGCCAAGAT
GAAGCAGGTGAATCCCAAGTACCGCTGCCAGATCACCATCATCAGTGGCG
ACTGCTCGCTGCCTGGACTGGGAATCAGTGCCGACGAGCGGGAGACCATC
ATGGAGAACGTCAACATCGTCCTGCACAGTGCGGCCACAGTGCGATTCGA
TGAGAAGCTCAAAATGGCCATCGCCATCAATGTGCACGGCACTAAGGAAA
TCATCAAGCTGGCCAAAGAGATTGTTAACTTGAAGGCTCTCGTCCACGTC
TCTACAGCATTTGCACACTGCAACATGCGGCACATCCAGGAGAGATTCTA
CAGTGGCACCATGTCTGGCGAGAACGCCTTCAAGCTGAGCGAGTGCCTCG
ATGAGCACACCCTGAACACCCTTACGCCGACCATCATCAAGGGATATCCG
AACACATACACCTTCACCAAAGTCCTGGCCGAGAATGTCGTGCAACAGAG
CGCTCAGAATTTGCCAGTTACTATCTTCAGACCCGGCATTGTGATCACCA
CTTACCGCGAACCGGTCACTGGCTGGATCGACAACATGTACGGTCCGTGC
GGAGTGATCGTGGGA
BS15211.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1443-PA | 1554 | CG1443-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:56:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wat-RA | 2274 | CG1443-RA | 400..1261 | 5..865 | 4255 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:56:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28994603..28994860 | 791..534 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 28994935..28995185 | 536..286 | 1255 | 100 | Minus |
3R | 32079331 | 3R | 28995260..28995374 | 288..174 | 575 | 100 | Minus |
3R | 32079331 | 3R | 28997635..28997720 | 98..13 | 415 | 98.8 | Minus |
3R | 32079331 | 3R | 28995466..28995541 | 173..98 | 380 | 100 | Minus |
3R | 32079331 | 3R | 28994174..28994248 | 865..791 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:56:28 has no hits.
BS15211.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:00 Download gff for
BS15211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1443-PA | 1..848 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:22 Download gff for
BS15211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1443-PA | 1..848 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:00:11 Download gff for
BS15211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1443-RA | 400..1260 | 5..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:24:22 Download gff for
BS15211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wat-RA | 400..1260 | 5..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:24:22 Download gff for
BS15211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28994175..28994247 | 792..864 | 100 | <- | Minus |
3R | 28994603..28994858 | 536..791 | 100 | <- | Minus |
3R | 28994936..28995184 | 287..535 | 100 | <- | Minus |
3R | 28995262..28995374 | 174..286 | 100 | <- | Minus |
3R | 28995466..28995540 | 99..173 | 100 | <- | Minus |
3R | 28997635..28997729 | 5..98 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:00:11 Download gff for
BS15211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24819897..24819969 | 792..864 | 100 | <- | Minus |
arm_3R | 24820325..24820580 | 536..791 | 100 | <- | Minus |
arm_3R | 24820658..24820906 | 287..535 | 100 | <- | Minus |
arm_3R | 24820984..24821096 | 174..286 | 100 | <- | Minus |
arm_3R | 24821188..24821262 | 99..173 | 100 | <- | Minus |
arm_3R | 24823357..24823451 | 5..98 | 96 | | Minus |
BS15211.pep Sequence
Translation from 16 to 1569
> BS15211.pep
MDDPKIMNIMNGMKSLEDHCQLISDVKDESPMQMFYKDKGVFLTGGTGFF
GKIIIEKLLRVTEVGQIYLLIRTKKGKDAFARIEDLFNDPVFAKMKQVNP
KYRCQITIISGDCSLPGLGISADERETIMENVNIVLHSAATVRFDEKLKM
AIAINVHGTKEIIKLAKEIVNLKALVHVSTAFAHCNMRHIQERFYSGTMS
GENAFKLSECLDEHTLNTLTPTIIKGYPNTYTFTKVLAENVVQQSAQNLP
VTIFRPGIVITTYREPVTGWIDNMYGPCGVIVGIGSGVLRVFTGDMDNKA
HIVPVDMCVNALLASAWDIARNKYETPPIYNYVPDAENMVTWRRYMEDGF
EYGCDIPMRKSIWYPRFTIVPHMWQYHILCFLYHTLPALVMDAIMVIIGK
KPRMMKIYRKIHKLSNVLKYFSSNEFRFDNDNVRKLTEKLDDRDKRLFAF
DMRDLDWTNLFRVSLYGLRLYVVKDDPSNIPESIKRYERLKVLHYTTLAV
FYALAAWALYALLKLFL*
BS15211.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wat-PA | 517 | CG1443-PA | 1..517 | 1..517 | 2725 | 100 | Plus |
CG14893-PB | 510 | CG14893-PB | 6..510 | 22..517 | 1077 | 41.2 | Plus |
CG17560-PA | 499 | CG17560-PA | 2..497 | 29..515 | 1047 | 41.5 | Plus |
CG10096-PD | 502 | CG10096-PD | 5..498 | 32..517 | 1022 | 40.1 | Plus |
CG10096-PB | 502 | CG10096-PB | 5..498 | 32..517 | 1022 | 40.1 | Plus |