Clone Sequence Records
BS15214.3prime Sequence
458 bp (458 high quality bases) assembled on 2006-10-24
> BS15214.3prime
ATGGTCTAGAAAGCTTTTACCAAAGCAATCATCGATCGGGGGCAGGTATC
CACTGCAGTAGTGCCAGGTGGACCAGGCTGACCAGCCCTGTTGACCCAGG
ACCTTTAGGGCACATCTTACGGAACTTTTGATGTCATCGGTCAAGAGAGC
GTTGCAACTCACATCGCAGCCATTGTGGGAGAACTTTCCACTGGACGGCT
GGCACCAGTACATGTCGTTGATCTGGAAAATGCCATAGTCGTTGGATCCA
TCGGTGTTGGGAGGCCCCACCACTCCGGTGCGGTAGGAGCTCTCGTGCTC
TGCAATGCACGCCCACTTGGACAACTGGTCACGAGAAACACCCATATTGG
CCATCTCGCGCGCCAGTGAGCAGCGATCCATGGTGCGACCCAGGACAGCT
GGAGTGACTAGTGCCAGGACACAGATTCCTAGGAGGGCTCTCATGTCGAC
TGATAACT
BS15214.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9120-PA | 429 | LysX-RA | 1..424 | 444..21 | 2120 | 100 | Minus |
CG1165-PA | 423 | LysS-RA | 159..246 | 286..199 | 165 | 87.5 | Minus |
CG9111-PA | 390 | LysC-RA | 305..342 | 53..90 | 140 | 94.7 | Plus |
CG1179-PA | 423 | LysB-RA | 352..389 | 90..53 | 140 | 94.7 | Minus |
CG1180-PA | 423 | LysE-RA | 352..389 | 90..53 | 140 | 94.7 | Minus |
CG9118-PA | 423 | LysD-RA | 352..389 | 90..53 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysX-RA | 564 | CG9120-RA | 3..431 | 449..21 | 2130 | 99.8 | Minus |
LysD-RA | 480 | CG9118-RA | 71..438 | 390..23 | 625 | 78.3 | Minus |
LysB-RB | 611 | CG1179-RB | 75..442 | 390..23 | 625 | 78 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1194872..1195300 | 21..449 | 2130 | 99.8 | Plus |
3L | 28110227 | 3L | 1207445..1207812 | 390..23 | 625 | 78 | Minus |
3L | 28110227 | 3L | 1210759..1211126 | 23..390 | 625 | 78 | Plus |
3L | 28110227 | 3L | 1213003..1213370 | 390..23 | 595 | 77.4 | Minus |
3L | 28110227 | 3L | 1227826..1228190 | 390..23 | 560 | 77.4 | Minus |
3L | 28110227 | 3L | 1210536..1210724 | 390..202 | 420 | 81.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:39:21 has no hits.
BS15214.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:04 Download gff for
BS15214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-PA | 1..429 | 16..444 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:27 Download gff for
BS15214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9120-PA | 1..429 | 16..444 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:54:35 Download gff for
BS15214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 1..436 | 16..451 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:21 Download gff for
BS15214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 1..436 | 16..451 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:21 Download gff for
BS15214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1194867..1195300 | 16..449 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:54:35 Download gff for
BS15214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1194867..1195300 | 16..449 | 99 | | Plus |
BS15214.5prime Sequence
459 bp (459 high quality bases) assembled on 2006-10-24
> BS15214.5prime
GAAGTTATCAGTCGACATGAGAGCCCTCCTAGGAATCTGTGTCCTGGCAC
TAGTCACTCCAGCTGTCCTGGGTCGCACCATGGATCGCTGCTCACTGGCG
CGCGAGATGGCCAATATGGGTGTTTCTCGTGACCAGTTGTCCAAGTGGGC
GTGCATTGCAGAGCACGAGAGCTCCTACCGCACCGGAGTGGTGGGGCCTC
CCAACACCGATGGATCCAACGACTATGGCATTTTCCAGATCAACGACATG
TACTGGTGCCAGCCGTCCAGTGGAAAGTTCTCCCACAATGGCTGCGATGT
GAGTTGCAACGCTCTCTTGACCGATGACATCAAAAGTTCCGTAAGATGTG
CCCTAAAGGTCCTGGGTCAACAGGGCTGGTCAGCCTGGTCCACCTGGCAC
TACTGCAGTGGATACCTGCCCCCGATCGATGATTGCTTTGTTTAAAAGCT
TTCTAGACC
BS15214.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9120-PA | 429 | LysX-RA | 1..429 | 17..445 | 2145 | 100 | Plus |
CG1165-PA | 423 | LysS-RA | 159..246 | 175..262 | 165 | 87.5 | Plus |
CG9111-PA | 390 | LysC-RA | 305..342 | 408..371 | 140 | 94.7 | Minus |
CG1179-PA | 423 | LysB-RA | 352..389 | 371..408 | 140 | 94.7 | Plus |
CG1180-PA | 423 | LysE-RA | 352..389 | 371..408 | 140 | 94.7 | Plus |
CG9118-PA | 423 | LysD-RA | 352..389 | 371..408 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysX-RA | 564 | CG9120-RA | 3..436 | 12..445 | 2155 | 99.8 | Plus |
LysD-RA | 480 | CG9118-RA | 71..438 | 71..438 | 625 | 78.3 | Plus |
LysB-RB | 611 | CG1179-RB | 75..442 | 71..438 | 625 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:55:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1194867..1195300 | 445..12 | 2155 | 99.8 | Minus |
3L | 28110227 | 3L | 1207445..1207812 | 71..438 | 625 | 78 | Plus |
3L | 28110227 | 3L | 1210759..1211126 | 438..71 | 625 | 78 | Minus |
3L | 28110227 | 3L | 1213003..1213370 | 71..438 | 595 | 77.4 | Plus |
3L | 28110227 | 3L | 1227826..1228190 | 71..438 | 560 | 77.4 | Plus |
3L | 28110227 | 3L | 1210536..1210724 | 71..259 | 420 | 81.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:55:56 has no hits.
BS15214.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:06 Download gff for
BS15214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-PA | 1..429 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:28 Download gff for
BS15214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9120-PA | 1..429 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:23 Download gff for
BS15214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 1..436 | 10..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:51:52 Download gff for
BS15214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 1..436 | 10..445 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:51:52 Download gff for
BS15214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1194867..1195300 | 12..445 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:23 Download gff for
BS15214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1194867..1195300 | 12..445 | 99 | | Minus |
BS15214.complete Sequence
461 bp assembled on 2006-11-01
GenBank Submission: FJ637891
> BS15214.complete
GAAGTTATCAGTCGACATGAGAGCCCTCCTAGGAATCTGTGTCCTGGCAC
TAGTCACTCCAGCTGTCCTGGGTCGCACCATGGATCGCTGCTCACTGGCG
CGCGAGATGGCCAATATGGGTGTTTCTCGTGACCAGTTGTCCAAGTGGGC
GTGCATTGCAGAGCACGAGAGCTCCTACCGCACCGGAGTGGTGGGGCCTC
CCAACACCGATGGATCCAACGACTATGGCATTTTCCAGATCAACGACATG
TACTGGTGCCAGCCGTCCAGTGGAAAGTTCTCCCACAATGGCTGCGATGT
GAGTTGCAACGCTCTCTTGACCGATGACATCAAAAGTTCCGTAAGATGTG
CCCTAAAGGTCCTGGGTCAACAGGGCTGGTCAGCCTGGTCCACCTGGCAC
TACTGCAGTGGATACCTGCCCCCGATCGATGATTGCTTTGTTTAAAAGCT
TTCTAGACCAT
BS15214.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysX-RA | 429 | CG9120-PA | 1..429 | 17..445 | 2145 | 100 | Plus |
LysD-RA | 423 | CG9118-PA | 52..419 | 71..438 | 625 | 78 | Plus |
LysB-RB | 423 | CG1179-PB | 52..419 | 71..438 | 625 | 78 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysX-RA | 564 | CG9120-RA | 3..436 | 12..445 | 2155 | 99.8 | Plus |
LysD-RA | 480 | CG9118-RA | 71..438 | 71..438 | 625 | 78 | Plus |
LysB-RB | 611 | CG1179-RB | 75..442 | 71..438 | 625 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1194867..1195300 | 445..12 | 2155 | 99.8 | Minus |
3L | 28110227 | 3L | 1207445..1207812 | 71..438 | 625 | 78 | Plus |
3L | 28110227 | 3L | 1210759..1211126 | 438..71 | 625 | 78 | Minus |
3L | 28110227 | 3L | 1213003..1213370 | 71..438 | 595 | 77.4 | Plus |
3L | 28110227 | 3L | 1227826..1228190 | 71..438 | 560 | 77.4 | Plus |
3L | 28110227 | 3L | 1210536..1210724 | 71..259 | 420 | 81.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:11:32 has no hits.
BS15214.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:50 Download gff for
BS15214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 1..429 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:27 Download gff for
BS15214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 1..436 | 10..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:21 Download gff for
BS15214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 8..434 | 17..443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:50 Download gff for
BS15214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 1..436 | 10..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:00 Download gff for
BS15214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 8..434 | 17..443 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:00 Download gff for
BS15214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1194869..1195295 | 17..443 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:21 Download gff for
BS15214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1194869..1195295 | 17..443 | 100 | | Minus |
BS15214.pep Sequence
Translation from 16 to 444
> BS15214.pep
MRALLGICVLALVTPAVLGRTMDRCSLAREMANMGVSRDQLSKWACIAEH
ESSYRTGVVGPPNTDGSNDYGIFQINDMYWCQPSSGKFSHNGCDVSCNAL
LTDDIKSSVRCALKVLGQQGWSAWSTWHYCSGYLPPIDDCFV*
BS15214.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysX-PA | 142 | CG9120-PA | 1..142 | 1..142 | 785 | 100 | Plus |
LysB-PB | 140 | CG1179-PB | 1..140 | 1..141 | 605 | 77.3 | Plus |
LysB-PA | 140 | CG1179-PA | 1..140 | 1..141 | 605 | 77.3 | Plus |
LysC-PA | 140 | CG9111-PA | 1..140 | 1..141 | 599 | 76.6 | Plus |
LysD-PA | 140 | CG9118-PA | 1..140 | 1..141 | 596 | 75.9 | Plus |