Clone BS15214 Report

Search the DGRC for BS15214

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptLysX-RA
Protein status:BS15214.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15214.3prime Sequence

458 bp (458 high quality bases) assembled on 2006-10-24

> BS15214.3prime
ATGGTCTAGAAAGCTTTTACCAAAGCAATCATCGATCGGGGGCAGGTATC
CACTGCAGTAGTGCCAGGTGGACCAGGCTGACCAGCCCTGTTGACCCAGG
ACCTTTAGGGCACATCTTACGGAACTTTTGATGTCATCGGTCAAGAGAGC
GTTGCAACTCACATCGCAGCCATTGTGGGAGAACTTTCCACTGGACGGCT
GGCACCAGTACATGTCGTTGATCTGGAAAATGCCATAGTCGTTGGATCCA
TCGGTGTTGGGAGGCCCCACCACTCCGGTGCGGTAGGAGCTCTCGTGCTC
TGCAATGCACGCCCACTTGGACAACTGGTCACGAGAAACACCCATATTGG
CCATCTCGCGCGCCAGTGAGCAGCGATCCATGGTGCGACCCAGGACAGCT
GGAGTGACTAGTGCCAGGACACAGATTCCTAGGAGGGCTCTCATGTCGAC
TGATAACT

BS15214.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9120-PA 429 LysX-RA 1..424 444..21 2120 100 Minus
CG1165-PA 423 LysS-RA 159..246 286..199 165 87.5 Minus
CG9111-PA 390 LysC-RA 305..342 53..90 140 94.7 Plus
CG1179-PA 423 LysB-RA 352..389 90..53 140 94.7 Minus
CG1180-PA 423 LysE-RA 352..389 90..53 140 94.7 Minus
CG9118-PA 423 LysD-RA 352..389 90..53 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
LysX-RA 564 CG9120-RA 3..431 449..21 2130 99.8 Minus
LysD-RA 480 CG9118-RA 71..438 390..23 625 78.3 Minus
LysB-RB 611 CG1179-RB 75..442 390..23 625 78 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1194872..1195300 21..449 2130 99.8 Plus
3L 28110227 3L 1207445..1207812 390..23 625 78 Minus
3L 28110227 3L 1210759..1211126 23..390 625 78 Plus
3L 28110227 3L 1213003..1213370 390..23 595 77.4 Minus
3L 28110227 3L 1227826..1228190 390..23 560 77.4 Minus
3L 28110227 3L 1210536..1210724 390..202 420 81.5 Minus
Blast to na_te.dros performed on 2015-02-11 17:39:21 has no hits.

BS15214.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:04 Download gff for BS15214.3prime
Subject Subject Range Query Range Percent Splice Strand
LysX-PA 1..429 16..444 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:27 Download gff for BS15214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9120-PA 1..429 16..444 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:54:35 Download gff for BS15214.3prime
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 1..436 16..451 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:21 Download gff for BS15214.3prime
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 1..436 16..451 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:21 Download gff for BS15214.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1194867..1195300 16..449 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:54:35 Download gff for BS15214.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1194867..1195300 16..449 99   Plus

BS15214.5prime Sequence

459 bp (459 high quality bases) assembled on 2006-10-24

> BS15214.5prime
GAAGTTATCAGTCGACATGAGAGCCCTCCTAGGAATCTGTGTCCTGGCAC
TAGTCACTCCAGCTGTCCTGGGTCGCACCATGGATCGCTGCTCACTGGCG
CGCGAGATGGCCAATATGGGTGTTTCTCGTGACCAGTTGTCCAAGTGGGC
GTGCATTGCAGAGCACGAGAGCTCCTACCGCACCGGAGTGGTGGGGCCTC
CCAACACCGATGGATCCAACGACTATGGCATTTTCCAGATCAACGACATG
TACTGGTGCCAGCCGTCCAGTGGAAAGTTCTCCCACAATGGCTGCGATGT
GAGTTGCAACGCTCTCTTGACCGATGACATCAAAAGTTCCGTAAGATGTG
CCCTAAAGGTCCTGGGTCAACAGGGCTGGTCAGCCTGGTCCACCTGGCAC
TACTGCAGTGGATACCTGCCCCCGATCGATGATTGCTTTGTTTAAAAGCT
TTCTAGACC

BS15214.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9120-PA 429 LysX-RA 1..429 17..445 2145 100 Plus
CG1165-PA 423 LysS-RA 159..246 175..262 165 87.5 Plus
CG9111-PA 390 LysC-RA 305..342 408..371 140 94.7 Minus
CG1179-PA 423 LysB-RA 352..389 371..408 140 94.7 Plus
CG1180-PA 423 LysE-RA 352..389 371..408 140 94.7 Plus
CG9118-PA 423 LysD-RA 352..389 371..408 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
LysX-RA 564 CG9120-RA 3..436 12..445 2155 99.8 Plus
LysD-RA 480 CG9118-RA 71..438 71..438 625 78.3 Plus
LysB-RB 611 CG1179-RB 75..442 71..438 625 78 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1194867..1195300 445..12 2155 99.8 Minus
3L 28110227 3L 1207445..1207812 71..438 625 78 Plus
3L 28110227 3L 1210759..1211126 438..71 625 78 Minus
3L 28110227 3L 1213003..1213370 71..438 595 77.4 Plus
3L 28110227 3L 1227826..1228190 71..438 560 77.4 Plus
3L 28110227 3L 1210536..1210724 71..259 420 81.5 Plus
Blast to na_te.dros performed on 2015-02-12 05:55:56 has no hits.

BS15214.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:06 Download gff for BS15214.5prime
Subject Subject Range Query Range Percent Splice Strand
LysX-PA 1..429 17..445 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:28 Download gff for BS15214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9120-PA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:23 Download gff for BS15214.5prime
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 1..436 10..445 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:51:52 Download gff for BS15214.5prime
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 1..436 10..445 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:51:52 Download gff for BS15214.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1194867..1195300 12..445 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:23 Download gff for BS15214.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1194867..1195300 12..445 99   Minus

BS15214.complete Sequence

461 bp assembled on 2006-11-01

GenBank Submission: FJ637891

> BS15214.complete
GAAGTTATCAGTCGACATGAGAGCCCTCCTAGGAATCTGTGTCCTGGCAC
TAGTCACTCCAGCTGTCCTGGGTCGCACCATGGATCGCTGCTCACTGGCG
CGCGAGATGGCCAATATGGGTGTTTCTCGTGACCAGTTGTCCAAGTGGGC
GTGCATTGCAGAGCACGAGAGCTCCTACCGCACCGGAGTGGTGGGGCCTC
CCAACACCGATGGATCCAACGACTATGGCATTTTCCAGATCAACGACATG
TACTGGTGCCAGCCGTCCAGTGGAAAGTTCTCCCACAATGGCTGCGATGT
GAGTTGCAACGCTCTCTTGACCGATGACATCAAAAGTTCCGTAAGATGTG
CCCTAAAGGTCCTGGGTCAACAGGGCTGGTCAGCCTGGTCCACCTGGCAC
TACTGCAGTGGATACCTGCCCCCGATCGATGATTGCTTTGTTTAAAAGCT
TTCTAGACCAT

BS15214.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
LysX-RA 429 CG9120-PA 1..429 17..445 2145 100 Plus
LysD-RA 423 CG9118-PA 52..419 71..438 625 78 Plus
LysB-RB 423 CG1179-PB 52..419 71..438 625 78 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
LysX-RA 564 CG9120-RA 3..436 12..445 2155 99.8 Plus
LysD-RA 480 CG9118-RA 71..438 71..438 625 78 Plus
LysB-RB 611 CG1179-RB 75..442 71..438 625 78 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1194867..1195300 445..12 2155 99.8 Minus
3L 28110227 3L 1207445..1207812 71..438 625 78 Plus
3L 28110227 3L 1210759..1211126 438..71 625 78 Minus
3L 28110227 3L 1213003..1213370 71..438 595 77.4 Plus
3L 28110227 3L 1227826..1228190 71..438 560 77.4 Plus
3L 28110227 3L 1210536..1210724 71..259 420 81.5 Plus
Blast to na_te.dros performed on 2014-11-27 15:11:32 has no hits.

BS15214.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:50 Download gff for BS15214.complete
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:27 Download gff for BS15214.complete
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 1..436 10..445 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:21 Download gff for BS15214.complete
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 8..434 17..443 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:50 Download gff for BS15214.complete
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 1..436 10..445 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:00 Download gff for BS15214.complete
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 8..434 17..443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:00 Download gff for BS15214.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1194869..1195295 17..443 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:21 Download gff for BS15214.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1194869..1195295 17..443 100   Minus

BS15214.pep Sequence

Translation from 16 to 444

> BS15214.pep
MRALLGICVLALVTPAVLGRTMDRCSLAREMANMGVSRDQLSKWACIAEH
ESSYRTGVVGPPNTDGSNDYGIFQINDMYWCQPSSGKFSHNGCDVSCNAL
LTDDIKSSVRCALKVLGQQGWSAWSTWHYCSGYLPPIDDCFV*

BS15214.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
LysX-PA 142 CG9120-PA 1..142 1..142 785 100 Plus
LysB-PB 140 CG1179-PB 1..140 1..141 605 77.3 Plus
LysB-PA 140 CG1179-PA 1..140 1..141 605 77.3 Plus
LysC-PA 140 CG9111-PA 1..140 1..141 599 76.6 Plus
LysD-PA 140 CG9118-PA 1..140 1..141 596 75.9 Plus