Clone Sequence Records
BS15215.3prime Sequence
530 bp (500 high quality bases) assembled on 2006-10-24
> BS15215.3prime
ATGGTCTAAAAAGCTTTTCTATTTTTTCGCCGTACTCTATCGCCTCGTCC
TCCTGCGGGACTTCCGACTCCATCGTGCGCAAATCCTCCTCGGAGGGCGA
GAAATCGTTGGTTATGTGAAAGGTCTGGCGAATCTCCTCCGTCGTGCGGC
CTTTAATCATGTTGGCCACCGTCATGCAGGCGGCGTTCAGCAGATTGGGA
ATGTCCAGGTAGTTGGCCGCCAAGATGAGTTCGAAGAGCGTGCCCTGATC
CATGGACAGGAACTCGGCGTCCCATGGGGTGATCTGCACAGCGACGGACT
TGGCCGCTTCCTCTTCTTTCTCCTCTGCAATGTCCTCGCGATGATGCTTG
GCCCAAATGAGGACCTTCTTCAGGATCGTCGAGTTCACATTGGGCAGCGG
GATAAGAGTGTCGTTCTCCGCTTCCACTGGACAATCCTCCAATAGGGTCT
TAATGGTGCTCGAGCACTTGGCAGTCTCGATGTCGGTCTCGAAAATTTCG
CCATCGGAGGACTGCAATTTGATGACTGGC
BS15215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12227-PA | 516 | skpF-RA | 3..453 | 530..80 | 2205 | 99.5 | Minus |
| CG12227-PA | 516 | skpF-RA | 457..508 | 76..25 | 260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:41:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpF-RA | 695 | CG12227-RA | 76..581 | 530..25 | 2455 | 99 | Minus |
| SkpB-RA | 877 | CG8881-RA | 530..628 | 247..149 | 195 | 79.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23458179..23458684 | 25..530 | 2455 | 99 | Plus |
| 2R | 25286936 | 2R | 12139544..12139642 | 149..247 | 195 | 79.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:41:42 has no hits.
BS15215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:07 Download gff for
BS15215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpF-PA | 3..516 | 17..530 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:29 Download gff for
BS15215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12227-PA | 3..516 | 17..530 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:24:00 Download gff for
BS15215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpF-RA | 76..590 | 16..530 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:06 Download gff for
BS15215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SkpF-RA | 76..590 | 16..530 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:06 Download gff for
BS15215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23458179..23458684 | 25..530 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:24:00 Download gff for
BS15215.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19345702..19346207 | 25..530 | 99 | | Plus |
BS15215.5prime Sequence
546 bp (546 high quality bases) assembled on 2006-10-24
> BS15215.5prime
GAAGTTATCAGTCGACATGCCAGTCATCAAATTGCAGTCCTCCGATGGCG
AAATTTTCGAGACCGACATCGAGACTGCCAAGTGCTCGAGCACCATTAAG
ACCCTATTGGAGGATTGTCCAGTGGAAGCGGAGAACGACACTCTTATCCC
GCTGCCCAATGTGAACTCGACGATCCTGAAGAAGGTCCTCATTTGGGCCA
AGCATCATCGCGAGGACATTGCAGAGGAGAACGAAGAGGAAGCGGCCAAG
TCCGTCGCTGTGCAGATCACCCCCTGGGACGCCGAGTTCCTGTCCATGGA
TCAGGGCACGCTCTTCGAACTCATCTTGGCGGCCAACTACCTGGACATTC
CCAATCTGCTGAACGCCGCCTGCATGACGGTGGCCAACATGATTAAAGGC
CGCACGACGGAGGAGATTCGCCAGACCTTTCACATAACCAACGATTTCTC
GCCCTCCGAGGAGGATTTGATGACGATGGAGTCGGAAGTCCCGCAGGAGG
ACGAGGCGATAGAGTACGGCGAAATTATATAAAAGCTTTCTAGACC
BS15215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12227-PA | 516 | skpF-RA | 1..516 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpF-RA | 695 | CG12227-RA | 73..590 | 16..533 | 2590 | 100 | Plus |
| SkpB-RA | 877 | CG8881-RA | 530..628 | 302..400 | 195 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23458170..23458687 | 533..16 | 2590 | 100 | Minus |
| 2R | 25286936 | 2R | 12139544..12139642 | 400..302 | 195 | 79.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:26:03 has no hits.
BS15215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:08 Download gff for
BS15215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpF-PA | 1..516 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:31 Download gff for
BS15215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12227-PA | 1..516 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:39:58 Download gff for
BS15215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpF-RA | 73..590 | 16..533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:52 Download gff for
BS15215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SkpF-RA | 73..590 | 16..533 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:52 Download gff for
BS15215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23458170..23458687 | 16..533 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:39:58 Download gff for
BS15215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19345693..19346210 | 16..533 | 100 | | Minus |
BS15215.complete Sequence
548 bp assembled on 2006-11-01
GenBank Submission: FJ638866
> BS15215.complete
GAAGTTATCAGTCGACATGCCAGTCATCAAATTGCAGTCCTCCGATGGCG
AAATTTTCGAGACCGACATCGAGACTGCCAAGTGCTCGAGCACCATTAAG
ACCCTATTGGAGGATTGTCCAGTGGAAGCGGAGAACGACACTCTTATCCC
GCTGCCCAATGTGAACTCGACGATCCTGAAGAAGGTCCTCATTTGGGCCA
AGCATCATCGCGAGGACATTGCAGAGGAGAACGAAGAGGAAGCGGCCAAG
TCCGTCGCTGTGCAGATCACCCCCTGGGACGCCGAGTTCCTGTCCATGGA
TCAGGGCACGCTCTTCGAACTCATCTTGGCGGCCAACTACCTGGACATTC
CCAATCTGCTGAACGCCGCCTGCATGACGGTGGCCAACATGATTAAAGGC
CGCACGACGGAGGAGATTCGCCAGACCTTTCACATAACCAACGATTTCTC
GCCCTCCGAGGAGGATTTGATGACGATGGAGTCGGAAGTCCCGCAGGAGG
ACGAGGCGATAGAGTACGGCGAAATTATATAAAAGCTTTCTAGACCAT
BS15215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpF-RA | 516 | CG12227-PA | 1..516 | 17..532 | 2580 | 100 | Plus |
| SkpB-RA | 486 | CG8881-PA | 283..381 | 302..400 | 195 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpF-RA | 695 | CG12227-RA | 73..590 | 16..533 | 2590 | 100 | Plus |
| SkpB-RA | 877 | CG8881-RA | 530..628 | 302..400 | 195 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23458170..23458687 | 533..16 | 2590 | 100 | Minus |
| 2R | 25286936 | 2R | 12139544..12139642 | 400..302 | 195 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:36:29 has no hits.
BS15215.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:06 Download gff for
BS15215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpF-RA | 1..516 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:53 Download gff for
BS15215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpF-RA | 73..590 | 16..533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:06 Download gff for
BS15215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpF-RA | 74..587 | 17..530 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:06 Download gff for
BS15215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpF-RA | 73..590 | 16..533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:05 Download gff for
BS15215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SkpF-RA | 74..587 | 17..530 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:05 Download gff for
BS15215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23458173..23458686 | 17..530 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:06 Download gff for
BS15215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19345696..19346209 | 17..530 | 100 | | Minus |
BS15215.pep Sequence
Translation from 16 to 531
> BS15215.pep
MPVIKLQSSDGEIFETDIETAKCSSTIKTLLEDCPVEAENDTLIPLPNVN
STILKKVLIWAKHHREDIAEENEEEAAKSVAVQITPWDAEFLSMDQGTLF
ELILAANYLDIPNLLNAACMTVANMIKGRTTEEIRQTFHITNDFSPSEED
LMTMESEVPQEDEAIEYGEII*
BS15215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpF-PA | 171 | CG12227-PA | 1..171 | 1..171 | 873 | 100 | Plus |
| SkpA-PI | 162 | CG16983-PI | 1..161 | 1..161 | 506 | 60.2 | Plus |
| SkpA-PH | 162 | CG16983-PH | 1..161 | 1..161 | 506 | 60.2 | Plus |
| SkpA-PA | 162 | CG16983-PA | 1..161 | 1..161 | 506 | 60.2 | Plus |
| SkpA-PD | 162 | CG16983-PD | 1..161 | 1..161 | 506 | 60.2 | Plus |
