Clone Sequence Records
BS15217.5prime Sequence
687 bp (630 high quality bases) assembled on 2006-10-24
> BS15217.5prime
GAAGTTATCAGTCGACATGCTGTCCTACATAAAGCGCAAGCTCTCCGAAT
CCGACAGCGGCGTCAGTTCGGTCGCAACTGTGACGTCGTCGTGCGGCGGC
GATAGTGGGAGAGCGGGCGGAACGGGCAGCAGTGAAAGCGGTACGGGCAG
CAGCAGCGCCAGTATCAGCGGACGCAGCCAGAACGCCGACGAGTTAGTGC
GCAAAACGAGCCAGATGTCGATGGATGATGAGGCCATTGCCTTCGGGGAG
GACGCACTGCTCCATGAACTGGGCTACAAGAATCAGACGGAACTGCAGGA
AACCATCTACGATCTGTTGCGCGGCATTCGCGATCCCGAGAAGCCGTGCA
CTTTGGAGGACCTCAACGTTGTCTACGAGGATGGAATCTTTGTGATGCCG
CCCACGCGCTCCAATGTCTCAGTTGTTCGCATCGAGTTTAACCCCACAGT
GCCACATTGCTCGTTGGCCACGCTTATTGGACTCTGTATACGCGTGAAAG
TAGAACGCGGACTTCCGCACAACATAAAGCTAGACATATACATCAAGAAG
GGAGCGCATCAAACCGAGGAAGAGATTAACAAGCAAATCAATGACAAGGA
GCGCATCGCTGCGGCCATGGAGAACCCCAATCTGAGGGATTTGGTCGAGA
ACTGCATCAAGGATGAGGAGTAGAAGCTTTCTAGACC
BS15217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30152-PA | 657 | CG30152-RA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30152-RC | 1473 | CG30152-RC | 698..1356 | 15..673 | 3295 | 100 | Plus |
CG30152-RB | 1895 | CG30152-RB | 179..837 | 15..673 | 3295 | 100 | Plus |
CG30152-RA | 954 | CG30152-RA | 179..837 | 15..673 | 3295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20671382..20671678 | 15..311 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 20672119..20672273 | 425..579 | 760 | 99.4 | Plus |
2R | 25286936 | 2R | 20671745..20671860 | 311..426 | 580 | 100 | Plus |
2R | 25286936 | 2R | 20672340..20672437 | 576..673 | 490 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 21:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 660..724 | 188..125 | 151 | 72.3 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 631..693 | 169..107 | 125 | 70.3 | Minus |
BS15217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:11 Download gff for
BS15217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-PA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:36 Download gff for
BS15217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-PA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:42:04 Download gff for
BS15217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 175..843 | 9..682 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:41 Download gff for
BS15217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 175..843 | 9..682 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:41 Download gff for
BS15217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20672340..20672443 | 576..682 | 96 | | Plus |
2R | 20671378..20671678 | 9..311 | 99 | -> | Plus |
2R | 20671746..20671858 | 312..424 | 100 | -> | Plus |
2R | 20672119..20672269 | 425..575 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:42:04 Download gff for
BS15217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16559845..16559948 | 576..682 | 96 | | Plus |
arm_2R | 16558883..16559183 | 9..311 | 99 | -> | Plus |
arm_2R | 16559251..16559363 | 312..424 | 100 | -> | Plus |
arm_2R | 16559624..16559774 | 425..575 | 100 | -> | Plus |
BS15217.complete Sequence
689 bp assembled on 2010-02-09
GenBank Submission: KX801280
> BS15217.complete
GAAGTTATCAGTCGACATGCTGTCCTACATAAAGCGCAAGCTCTCCGAAT
CCGACAGCGGCGTCAGTTCGGTCGCAACTGTGACGTCGTCGTGCGGCGGC
GATAGTGGGAGAGCGGGCGGAACGGGCAGCAGTGAAAGCGGTACGGGCAG
CAGCAGCGCCAGTATCAGCGGACGCAGCCAGAACGCCGACGAGTTAGTGC
GCAAAACGAGCCAGATGTCGATGGATGATGAGGCCATTGCCTTCGGGGAG
GACGCACTGCTCCATGAACTGGGCTACAAGAATCAGACGGAACTGCAGGA
AACCATCTACGATCTGTTGCGCGGCATTCGCGATCCCGAGAAGCCGTGCA
CTTTGGAGGACCTCAACGTTGTCTACGAGGATGGAATCTTTGTGATGCCG
CCCACGCGCTCCAATGTCTCAGTTGTTCGCATCGAGTTTAACCCCACAGT
GCCACATTGCTCGTTGGCCACGCTTATTGGACTCTGTATACGCGTGAAAG
TAGAACGCGGACTTCCGCACAACATAAAGCTAGACATATACATCAAGAAG
GGAGCGCATCAAACCGAGGAAGAGATTAACAAGCAAATCAATGACAAGGA
GCGCATCGCTGCGGCCATGGAGAACCCCAATCTGAGGGATTTGGTCGAGA
ACTGCATCAAGGATGAGGAGTAGAAGCTTTCTAGACCAT
BS15217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30152-RC | 657 | CG30152-PC | 1..657 | 17..673 | 3285 | 100 | Plus |
CG30152-RB | 657 | CG30152-PB | 1..657 | 17..673 | 3285 | 100 | Plus |
CG30152-RA | 657 | CG30152-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30152-RC | 1473 | CG30152-RC | 698..1356 | 15..673 | 3295 | 100 | Plus |
CG30152-RB | 1895 | CG30152-RB | 179..837 | 15..673 | 3295 | 100 | Plus |
CG30152-RA | 954 | CG30152-RA | 179..837 | 15..673 | 3295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20671382..20671678 | 15..311 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 20672119..20672273 | 425..579 | 760 | 99.4 | Plus |
2R | 25286936 | 2R | 20671745..20671860 | 311..426 | 580 | 100 | Plus |
2R | 25286936 | 2R | 20672340..20672437 | 576..673 | 490 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:56:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 660..724 | 188..125 | 151 | 72.3 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 631..693 | 169..107 | 125 | 70.3 | Minus |
BS15217.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:52 Download gff for
BS15217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:29 Download gff for
BS15217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 182..838 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:41 Download gff for
BS15217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 181..837 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:05 Download gff for
BS15217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 182..838 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:41 Download gff for
BS15217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 181..837 | 17..673 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:41 Download gff for
BS15217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20671746..20671858 | 312..424 | 100 | -> | Plus |
2R | 20672119..20672269 | 425..575 | 100 | -> | Plus |
2R | 20672340..20672437 | 576..673 | 100 | | Plus |
2R | 20671384..20671678 | 17..311 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:41 Download gff for
BS15217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16559845..16559942 | 576..673 | 100 | | Plus |
arm_2R | 16559624..16559774 | 425..575 | 100 | -> | Plus |
arm_2R | 16558889..16559183 | 17..311 | 100 | -> | Plus |
arm_2R | 16559251..16559363 | 312..424 | 100 | -> | Plus |
BS15217.pep Sequence
Translation from 16 to 672
> BS15217.pep
MLSYIKRKLSESDSGVSSVATVTSSCGGDSGRAGGTGSSESGTGSSSASI
SGRSQNADELVRKTSQMSMDDEAIAFGEDALLHELGYKNQTELQETIYDL
LRGIRDPEKPCTLEDLNVVYEDGIFVMPPTRSNVSVVRIEFNPTVPHCSL
ATLIGLCIRVKVERGLPHNIKLDIYIKKGAHQTEEEINKQINDKERIAAA
MENPNLRDLVENCIKDEE*
BS15217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30152-PC | 218 | CG30152-PC | 1..218 | 1..218 | 1110 | 100 | Plus |
CG30152-PB | 218 | CG30152-PB | 1..218 | 1..218 | 1110 | 100 | Plus |
CG30152-PA | 218 | CG30152-PA | 1..218 | 1..218 | 1110 | 100 | Plus |
CG30152-PD | 152 | CG30152-PD | 1..152 | 67..218 | 792 | 100 | Plus |
CG7949-PA | 156 | CG7949-PA | 39..152 | 97..214 | 301 | 51.7 | Plus |