Clone BS15217 Report

Search the DGRC for BS15217

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG30152-RA
Protein status:BS15217.pep: full length peptide match
Sequenced Size:689

Clone Sequence Records

BS15217.5prime Sequence

687 bp (630 high quality bases) assembled on 2006-10-24

> BS15217.5prime
GAAGTTATCAGTCGACATGCTGTCCTACATAAAGCGCAAGCTCTCCGAAT
CCGACAGCGGCGTCAGTTCGGTCGCAACTGTGACGTCGTCGTGCGGCGGC
GATAGTGGGAGAGCGGGCGGAACGGGCAGCAGTGAAAGCGGTACGGGCAG
CAGCAGCGCCAGTATCAGCGGACGCAGCCAGAACGCCGACGAGTTAGTGC
GCAAAACGAGCCAGATGTCGATGGATGATGAGGCCATTGCCTTCGGGGAG
GACGCACTGCTCCATGAACTGGGCTACAAGAATCAGACGGAACTGCAGGA
AACCATCTACGATCTGTTGCGCGGCATTCGCGATCCCGAGAAGCCGTGCA
CTTTGGAGGACCTCAACGTTGTCTACGAGGATGGAATCTTTGTGATGCCG
CCCACGCGCTCCAATGTCTCAGTTGTTCGCATCGAGTTTAACCCCACAGT
GCCACATTGCTCGTTGGCCACGCTTATTGGACTCTGTATACGCGTGAAAG
TAGAACGCGGACTTCCGCACAACATAAAGCTAGACATATACATCAAGAAG
GGAGCGCATCAAACCGAGGAAGAGATTAACAAGCAAATCAATGACAAGGA
GCGCATCGCTGCGGCCATGGAGAACCCCAATCTGAGGGATTTGGTCGAGA
ACTGCATCAAGGATGAGGAGTAGAAGCTTTCTAGACC

BS15217.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG30152-PA 657 CG30152-RA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG30152-RC 1473 CG30152-RC 698..1356 15..673 3295 100 Plus
CG30152-RB 1895 CG30152-RB 179..837 15..673 3295 100 Plus
CG30152-RA 954 CG30152-RA 179..837 15..673 3295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20671382..20671678 15..311 1485 100 Plus
2R 25286936 2R 20672119..20672273 425..579 760 99.4 Plus
2R 25286936 2R 20671745..20671860 311..426 580 100 Plus
2R 25286936 2R 20672340..20672437 576..673 490 100 Plus
Blast to na_te.dros performed 2015-02-04 21:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 660..724 188..125 151 72.3 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 631..693 169..107 125 70.3 Minus

BS15217.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:11 Download gff for BS15217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30152-PA 1..657 17..673 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:36 Download gff for BS15217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30152-PA 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:42:04 Download gff for BS15217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30152-RA 175..843 9..682 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:41 Download gff for BS15217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30152-RA 175..843 9..682 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:41 Download gff for BS15217.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20672340..20672443 576..682 96   Plus
2R 20671378..20671678 9..311 99 -> Plus
2R 20671746..20671858 312..424 100 -> Plus
2R 20672119..20672269 425..575 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:42:04 Download gff for BS15217.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16559845..16559948 576..682 96   Plus
arm_2R 16558883..16559183 9..311 99 -> Plus
arm_2R 16559251..16559363 312..424 100 -> Plus
arm_2R 16559624..16559774 425..575 100 -> Plus

BS15217.complete Sequence

689 bp assembled on 2010-02-09

GenBank Submission: KX801280

> BS15217.complete
GAAGTTATCAGTCGACATGCTGTCCTACATAAAGCGCAAGCTCTCCGAAT
CCGACAGCGGCGTCAGTTCGGTCGCAACTGTGACGTCGTCGTGCGGCGGC
GATAGTGGGAGAGCGGGCGGAACGGGCAGCAGTGAAAGCGGTACGGGCAG
CAGCAGCGCCAGTATCAGCGGACGCAGCCAGAACGCCGACGAGTTAGTGC
GCAAAACGAGCCAGATGTCGATGGATGATGAGGCCATTGCCTTCGGGGAG
GACGCACTGCTCCATGAACTGGGCTACAAGAATCAGACGGAACTGCAGGA
AACCATCTACGATCTGTTGCGCGGCATTCGCGATCCCGAGAAGCCGTGCA
CTTTGGAGGACCTCAACGTTGTCTACGAGGATGGAATCTTTGTGATGCCG
CCCACGCGCTCCAATGTCTCAGTTGTTCGCATCGAGTTTAACCCCACAGT
GCCACATTGCTCGTTGGCCACGCTTATTGGACTCTGTATACGCGTGAAAG
TAGAACGCGGACTTCCGCACAACATAAAGCTAGACATATACATCAAGAAG
GGAGCGCATCAAACCGAGGAAGAGATTAACAAGCAAATCAATGACAAGGA
GCGCATCGCTGCGGCCATGGAGAACCCCAATCTGAGGGATTTGGTCGAGA
ACTGCATCAAGGATGAGGAGTAGAAGCTTTCTAGACCAT

BS15217.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG30152-RC 657 CG30152-PC 1..657 17..673 3285 100 Plus
CG30152-RB 657 CG30152-PB 1..657 17..673 3285 100 Plus
CG30152-RA 657 CG30152-PA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG30152-RC 1473 CG30152-RC 698..1356 15..673 3295 100 Plus
CG30152-RB 1895 CG30152-RB 179..837 15..673 3295 100 Plus
CG30152-RA 954 CG30152-RA 179..837 15..673 3295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20671382..20671678 15..311 1485 100 Plus
2R 25286936 2R 20672119..20672273 425..579 760 99.4 Plus
2R 25286936 2R 20671745..20671860 311..426 580 100 Plus
2R 25286936 2R 20672340..20672437 576..673 490 100 Plus
Blast to na_te.dros performed 2014-11-27 10:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 660..724 188..125 151 72.3 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 631..693 169..107 125 70.3 Minus

BS15217.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:52 Download gff for BS15217.complete
Subject Subject Range Query Range Percent Splice Strand
CG30152-RA 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:29 Download gff for BS15217.complete
Subject Subject Range Query Range Percent Splice Strand
CG30152-RA 182..838 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:41 Download gff for BS15217.complete
Subject Subject Range Query Range Percent Splice Strand
CG30152-RA 181..837 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:05 Download gff for BS15217.complete
Subject Subject Range Query Range Percent Splice Strand
CG30152-RA 182..838 17..673 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:41 Download gff for BS15217.complete
Subject Subject Range Query Range Percent Splice Strand
CG30152-RA 181..837 17..673 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:41 Download gff for BS15217.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20671746..20671858 312..424 100 -> Plus
2R 20672119..20672269 425..575 100 -> Plus
2R 20672340..20672437 576..673 100   Plus
2R 20671384..20671678 17..311 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:41 Download gff for BS15217.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16559845..16559942 576..673 100   Plus
arm_2R 16559624..16559774 425..575 100 -> Plus
arm_2R 16558889..16559183 17..311 100 -> Plus
arm_2R 16559251..16559363 312..424 100 -> Plus

BS15217.pep Sequence

Translation from 16 to 672

> BS15217.pep
MLSYIKRKLSESDSGVSSVATVTSSCGGDSGRAGGTGSSESGTGSSSASI
SGRSQNADELVRKTSQMSMDDEAIAFGEDALLHELGYKNQTELQETIYDL
LRGIRDPEKPCTLEDLNVVYEDGIFVMPPTRSNVSVVRIEFNPTVPHCSL
ATLIGLCIRVKVERGLPHNIKLDIYIKKGAHQTEEEINKQINDKERIAAA
MENPNLRDLVENCIKDEE*

BS15217.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG30152-PC 218 CG30152-PC 1..218 1..218 1110 100 Plus
CG30152-PB 218 CG30152-PB 1..218 1..218 1110 100 Plus
CG30152-PA 218 CG30152-PA 1..218 1..218 1110 100 Plus
CG30152-PD 152 CG30152-PD 1..152 67..218 792 100 Plus
CG7949-PA 156 CG7949-PA 39..152 97..214 301 51.7 Plus