Clone Sequence Records
BS15218.3prime Sequence
772 bp (693 high quality bases) assembled on 2006-10-24
> BS15218.3prime
ATGGTCTAGAAAGCTTCTACATGGTGGTCGAATAGGACATCAGGGCAATC
TGGGGATGCGACAGCGACACGTCGCGGAACTCATTCGTGAAGGAGAGGAT
AAAGAAGCTGAAGACGGTGGCGATGACCCACTCTGAAATAGAGCTGACCA
CGTGGAAGTACCAGCCGCCGTCCGAGGGATACCACTTTCGAGGATTCTGT
CCTTTGAAGAGGATGTGCGACATCACGCCGGTGACCGCCAGCAGGATGAA
CAGGATCGTGCAGACAACGGACATGCCCAGCCGCAAGTGAGCGTTAATGC
GGGTACCCGACATGGGGAAGATCAGATACGAGATGAGCGCCTGCATCCAA
AAGTACAAGGTGCCGCAGCCGAAGCAGCAGAAGGCTCCGATGAAGTGGAC
AATCCGCACGTTCGTCTCCTGAAAGTTGCCCACGAAGCTAATGCCCAGGC
AGGACACCAGTCCGAACCACAAGGCTAGTCGGTTCTGGCGCAGCACCGAC
CCGTCCAAATCCGGATGGTGTTCATAAAGCTGCAGCACCTGACGGTAGCG
TACGTAGATGGTAATTCCAAGCAGAACGCTGCCTATGTTGATAAGCTGCC
CGAACACACAGCTTTCCGGCGAGTAGGTGGCCGCATCGCTGATGTAGGGA
ACCGTGGGCACCACATGCCCCTCCAGCACGGCGAAGATGTACGTGCCAAG
AAAGGTGACCTGAAATATCAGGAACGTGAGCACCGGCAGCAAAGTAAACC
TGTGACTTGTCGACTGATAACT
BS15218.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4025-PA | 741 | CG4025-RA | 16..737 | 742..21 | 3585 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4025-RA | 1240 | CG4025-RA | 120..859 | 756..16 | 3650 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2077452..2077841 | 570..181 | 1950 | 100 | Minus |
X | 23542271 | X | 2077907..2078074 | 183..16 | 825 | 99.4 | Minus |
X | 23542271 | X | 2077218..2077339 | 692..571 | 610 | 100 | Minus |
X | 23542271 | X | 2077085..2077150 | 756..690 | 270 | 97 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:40:19 has no hits.
BS15218.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:12 Download gff for
BS15218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-PA | 1..741 | 17..757 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:37 Download gff for
BS15218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-PA | 1..741 | 17..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:39 Download gff for
BS15218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 112..863 | 11..765 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:36 Download gff for
BS15218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 112..863 | 11..765 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:36 Download gff for
BS15218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2077452..2077839 | 183..570 | 100 | -> | Minus |
X | 2077077..2077147 | 693..765 | 91 | -> | Minus |
X | 2077218..2077339 | 571..692 | 100 | -> | Minus |
X | 2077908..2078078 | 11..182 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:39 Download gff for
BS15218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1971110..1971180 | 693..765 | 91 | -> | Minus |
arm_X | 1971251..1971372 | 571..692 | 100 | -> | Minus |
arm_X | 1971485..1971872 | 183..570 | 100 | -> | Minus |
arm_X | 1971941..1972111 | 11..182 | 98 | | Minus |
BS15218.5prime Sequence
772 bp (720 high quality bases) assembled on 2006-10-24
> BS15218.5prime
GAAGTTATCAGTCGACATGTCACAGGTTTACTTGCTGCCGGTGCTCACGT
TCCTGATATTCCAGGTCACCTTTCTTGGCACGTACATCTTCGCCGTGCTG
GAGGGGCATGTGGTGCCCACGGTTCCCTACATCAGCGATGCGGCCACCTA
CTCGCCGGAAAGCTGTGTGTTCGGGCAGCTTATCAACATAGGCAGCGTTC
TGCTTGGAATTACCATCTACGTACGCTACCGTCAGGTGCTGCAGCTTTAT
GAACACCATCCGGATTTGGACGGGTCGGTGCTGCGCCAGAACCGACTAGC
CTTGTGGTTCGGACTGGTGTCCTGCCTGGGCATTAGCTTCGTGGGCAACT
TTCAGGAGACGAACGTGCGGATTGTCCACTTCATCGGAGCCTTCTGCTGC
TTCGGCTGCGGCACCTTGTACTTTTGGATGCAGGCGCTCATCTCGTATCT
GATCTTCCCCATGTCGGGTACCCGCATTAACGCTCACTTGCGGCTGGGCA
TGTCCGTTGTCTGCACGATCCTGTTCATCCTGCTGGCGGTCACCGGCGTG
ATGTCGCACATCCTCTTCAAAGGACAGAATCCTCGAAAGTGGTATCCCTC
GGACGGCGGCTGGTACTTCCACGTGGTCAGCTCTATTTCAGAGTGGGTCA
TCGCCACCGTCTTCAGCTTCTTTATCCTCTCCTTCACGAATGAGTTCCGC
GACGTGTCGCTGTCGCATCCCCAGATTGCCCTGATGTCCTATTCGACCAC
CATCTAGAAACTTTCTAGACCA
BS15218.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4025-PA | 741 | CG4025-RA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4025-RA | 1240 | CG4025-RA | 118..859 | 17..758 | 3710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2077452..2077841 | 204..593 | 1950 | 100 | Plus |
X | 23542271 | X | 2077907..2078074 | 591..758 | 840 | 100 | Plus |
X | 23542271 | X | 2077218..2077339 | 82..203 | 610 | 100 | Plus |
X | 23542271 | X | 2077083..2077150 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:32:56 has no hits.
BS15218.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:13 Download gff for
BS15218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-PA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:39 Download gff for
BS15218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-PA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:29:50 Download gff for
BS15218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 112..863 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:02 Download gff for
BS15218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 112..863 | 10..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:02 Download gff for
BS15218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2077077..2077147 | 10..81 | 95 | -> | Plus |
X | 2077218..2077339 | 82..203 | 100 | -> | Plus |
X | 2077452..2077839 | 204..591 | 100 | -> | Plus |
X | 2077908..2078078 | 592..763 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:29:50 Download gff for
BS15218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1971110..1971180 | 10..81 | 95 | -> | Plus |
arm_X | 1971251..1971372 | 82..203 | 100 | -> | Plus |
arm_X | 1971485..1971872 | 204..591 | 100 | -> | Plus |
arm_X | 1971941..1972111 | 592..763 | 98 | | Plus |
BS15218.complete Sequence
773 bp assembled on 2006-11-01
GenBank Submission: FJ637892
> BS15218.complete
GAAGTTATCAGTCGACATGTCACAGGTTTACTTGCTGCCGGTGCTCACGT
TCCTGATATTCCAGGTCACCTTTCTTGGCACGTACATCTTCGCCGTGCTG
GAGGGGCATGTGGTGCCCACGGTTCCCTACATCAGCGATGCGGCCACCTA
CTCGCCGGAAAGCTGTGTGTTCGGGCAGCTTATCAACATAGGCAGCGTTC
TGCTTGGAATTACCATCTACGTACGCTACCGTCAGGTGCTGCAGCTTTAT
GAACACCATCCGGATTTGGACGGGTCGGTGCTGCGCCAGAACCGACTAGC
CTTGTGGTTCGGACTGGTGTCCTGCCTGGGCATTAGCTTCGTGGGCAACT
TTCAGGAGACGAACGTGCGGATTGTCCACTTCATCGGAGCCTTCTGCTGC
TTCGGCTGCGGCACCTTGTACTTTTGGATGCAGGCGCTCATCTCGTATCT
GATCTTCCCCATGTCGGGTACCCGCATTAACGCTCACTTGCGGCTGGGCA
TGTCCGTTGTCTGCACGATCCTGTTCATCCTGCTGGCGGTCACCGGCGTG
ATGTCGCACATCCTCTTCAAAGGACAGAATCCTCGAAAGTGGTATCCCTC
GGACGGCGGCTGGTACTTCCACGTGGTCAGCTCTATTTCAGAGTGGGTCA
TCGCCACCGTCTTCAGCTTCTTTATCCTCTCCTTCACGAATGAGTTCCGC
GACGTGTCGCTGTCGCATCCCCAGATTGCCCTGATGTCCTATTCGACCAC
CATCTAGAAGCTTTCTAGACCAT
BS15218.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4025-RA | 741 | CG4025-PA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4025-RA | 1240 | CG4025-RA | 118..859 | 17..758 | 3710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2077452..2077841 | 204..593 | 1950 | 100 | Plus |
X | 23542271 | X | 2077907..2078074 | 591..758 | 840 | 100 | Plus |
X | 23542271 | X | 2077218..2077339 | 82..203 | 610 | 100 | Plus |
X | 23542271 | X | 2077083..2077150 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:52:03 has no hits.
BS15218.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:23 Download gff for
BS15218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:43 Download gff for
BS15218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 96..847 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:25 Download gff for
BS15218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 118..858 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:23 Download gff for
BS15218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 96..847 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:58 Download gff for
BS15218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 118..858 | 17..757 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:58 Download gff for
BS15218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2077083..2077147 | 17..81 | 100 | -> | Plus |
X | 2077218..2077339 | 82..203 | 100 | -> | Plus |
X | 2077452..2077839 | 204..591 | 100 | -> | Plus |
X | 2077908..2078073 | 592..757 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:25 Download gff for
BS15218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1971116..1971180 | 17..81 | 100 | -> | Plus |
arm_X | 1971251..1971372 | 82..203 | 100 | -> | Plus |
arm_X | 1971941..1972106 | 592..757 | 100 | | Plus |
arm_X | 1971485..1971872 | 204..591 | 100 | -> | Plus |
BS15218.pep Sequence
Translation from 16 to 756
> BS15218.pep
MSQVYLLPVLTFLIFQVTFLGTYIFAVLEGHVVPTVPYISDAATYSPESC
VFGQLINIGSVLLGITIYVRYRQVLQLYEHHPDLDGSVLRQNRLALWFGL
VSCLGISFVGNFQETNVRIVHFIGAFCCFGCGTLYFWMQALISYLIFPMS
GTRINAHLRLGMSVVCTILFILLAVTGVMSHILFKGQNPRKWYPSDGGWY
FHVVSSISEWVIATVFSFFILSFTNEFRDVSLSHPQIALMSYSTTI*
BS15218.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4025-PA | 246 | CG4025-PA | 1..246 | 1..246 | 1294 | 100 | Plus |