Clone BS15218 Report

Search the DGRC for BS15218

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG4025-RA
Protein status:BS15218.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15218.3prime Sequence

772 bp (693 high quality bases) assembled on 2006-10-24

> BS15218.3prime
ATGGTCTAGAAAGCTTCTACATGGTGGTCGAATAGGACATCAGGGCAATC
TGGGGATGCGACAGCGACACGTCGCGGAACTCATTCGTGAAGGAGAGGAT
AAAGAAGCTGAAGACGGTGGCGATGACCCACTCTGAAATAGAGCTGACCA
CGTGGAAGTACCAGCCGCCGTCCGAGGGATACCACTTTCGAGGATTCTGT
CCTTTGAAGAGGATGTGCGACATCACGCCGGTGACCGCCAGCAGGATGAA
CAGGATCGTGCAGACAACGGACATGCCCAGCCGCAAGTGAGCGTTAATGC
GGGTACCCGACATGGGGAAGATCAGATACGAGATGAGCGCCTGCATCCAA
AAGTACAAGGTGCCGCAGCCGAAGCAGCAGAAGGCTCCGATGAAGTGGAC
AATCCGCACGTTCGTCTCCTGAAAGTTGCCCACGAAGCTAATGCCCAGGC
AGGACACCAGTCCGAACCACAAGGCTAGTCGGTTCTGGCGCAGCACCGAC
CCGTCCAAATCCGGATGGTGTTCATAAAGCTGCAGCACCTGACGGTAGCG
TACGTAGATGGTAATTCCAAGCAGAACGCTGCCTATGTTGATAAGCTGCC
CGAACACACAGCTTTCCGGCGAGTAGGTGGCCGCATCGCTGATGTAGGGA
ACCGTGGGCACCACATGCCCCTCCAGCACGGCGAAGATGTACGTGCCAAG
AAAGGTGACCTGAAATATCAGGAACGTGAGCACCGGCAGCAAAGTAAACC
TGTGACTTGTCGACTGATAACT

BS15218.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4025-PA 741 CG4025-RA 16..737 742..21 3585 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4025-RA 1240 CG4025-RA 120..859 756..16 3650 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2077452..2077841 570..181 1950 100 Minus
X 23542271 X 2077907..2078074 183..16 825 99.4 Minus
X 23542271 X 2077218..2077339 692..571 610 100 Minus
X 23542271 X 2077085..2077150 756..690 270 97 Minus
Blast to na_te.dros performed on 2015-02-11 04:40:19 has no hits.

BS15218.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:12 Download gff for BS15218.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4025-PA 1..741 17..757 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:37 Download gff for BS15218.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4025-PA 1..741 17..757 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:39 Download gff for BS15218.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 112..863 11..765 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:36 Download gff for BS15218.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 112..863 11..765 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:36 Download gff for BS15218.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2077452..2077839 183..570 100 -> Minus
X 2077077..2077147 693..765 91 -> Minus
X 2077218..2077339 571..692 100 -> Minus
X 2077908..2078078 11..182 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:39 Download gff for BS15218.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1971110..1971180 693..765 91 -> Minus
arm_X 1971251..1971372 571..692 100 -> Minus
arm_X 1971485..1971872 183..570 100 -> Minus
arm_X 1971941..1972111 11..182 98   Minus

BS15218.5prime Sequence

772 bp (720 high quality bases) assembled on 2006-10-24

> BS15218.5prime
GAAGTTATCAGTCGACATGTCACAGGTTTACTTGCTGCCGGTGCTCACGT
TCCTGATATTCCAGGTCACCTTTCTTGGCACGTACATCTTCGCCGTGCTG
GAGGGGCATGTGGTGCCCACGGTTCCCTACATCAGCGATGCGGCCACCTA
CTCGCCGGAAAGCTGTGTGTTCGGGCAGCTTATCAACATAGGCAGCGTTC
TGCTTGGAATTACCATCTACGTACGCTACCGTCAGGTGCTGCAGCTTTAT
GAACACCATCCGGATTTGGACGGGTCGGTGCTGCGCCAGAACCGACTAGC
CTTGTGGTTCGGACTGGTGTCCTGCCTGGGCATTAGCTTCGTGGGCAACT
TTCAGGAGACGAACGTGCGGATTGTCCACTTCATCGGAGCCTTCTGCTGC
TTCGGCTGCGGCACCTTGTACTTTTGGATGCAGGCGCTCATCTCGTATCT
GATCTTCCCCATGTCGGGTACCCGCATTAACGCTCACTTGCGGCTGGGCA
TGTCCGTTGTCTGCACGATCCTGTTCATCCTGCTGGCGGTCACCGGCGTG
ATGTCGCACATCCTCTTCAAAGGACAGAATCCTCGAAAGTGGTATCCCTC
GGACGGCGGCTGGTACTTCCACGTGGTCAGCTCTATTTCAGAGTGGGTCA
TCGCCACCGTCTTCAGCTTCTTTATCCTCTCCTTCACGAATGAGTTCCGC
GACGTGTCGCTGTCGCATCCCCAGATTGCCCTGATGTCCTATTCGACCAC
CATCTAGAAACTTTCTAGACCA

BS15218.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4025-PA 741 CG4025-RA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4025-RA 1240 CG4025-RA 118..859 17..758 3710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2077452..2077841 204..593 1950 100 Plus
X 23542271 X 2077907..2078074 591..758 840 100 Plus
X 23542271 X 2077218..2077339 82..203 610 100 Plus
X 23542271 X 2077083..2077150 17..84 340 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:32:56 has no hits.

BS15218.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:13 Download gff for BS15218.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4025-PA 1..741 17..757 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:39 Download gff for BS15218.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4025-PA 1..741 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:29:50 Download gff for BS15218.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 112..863 10..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:02 Download gff for BS15218.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 112..863 10..763 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:02 Download gff for BS15218.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2077077..2077147 10..81 95 -> Plus
X 2077218..2077339 82..203 100 -> Plus
X 2077452..2077839 204..591 100 -> Plus
X 2077908..2078078 592..763 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:29:50 Download gff for BS15218.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1971110..1971180 10..81 95 -> Plus
arm_X 1971251..1971372 82..203 100 -> Plus
arm_X 1971485..1971872 204..591 100 -> Plus
arm_X 1971941..1972111 592..763 98   Plus

BS15218.complete Sequence

773 bp assembled on 2006-11-01

GenBank Submission: FJ637892

> BS15218.complete
GAAGTTATCAGTCGACATGTCACAGGTTTACTTGCTGCCGGTGCTCACGT
TCCTGATATTCCAGGTCACCTTTCTTGGCACGTACATCTTCGCCGTGCTG
GAGGGGCATGTGGTGCCCACGGTTCCCTACATCAGCGATGCGGCCACCTA
CTCGCCGGAAAGCTGTGTGTTCGGGCAGCTTATCAACATAGGCAGCGTTC
TGCTTGGAATTACCATCTACGTACGCTACCGTCAGGTGCTGCAGCTTTAT
GAACACCATCCGGATTTGGACGGGTCGGTGCTGCGCCAGAACCGACTAGC
CTTGTGGTTCGGACTGGTGTCCTGCCTGGGCATTAGCTTCGTGGGCAACT
TTCAGGAGACGAACGTGCGGATTGTCCACTTCATCGGAGCCTTCTGCTGC
TTCGGCTGCGGCACCTTGTACTTTTGGATGCAGGCGCTCATCTCGTATCT
GATCTTCCCCATGTCGGGTACCCGCATTAACGCTCACTTGCGGCTGGGCA
TGTCCGTTGTCTGCACGATCCTGTTCATCCTGCTGGCGGTCACCGGCGTG
ATGTCGCACATCCTCTTCAAAGGACAGAATCCTCGAAAGTGGTATCCCTC
GGACGGCGGCTGGTACTTCCACGTGGTCAGCTCTATTTCAGAGTGGGTCA
TCGCCACCGTCTTCAGCTTCTTTATCCTCTCCTTCACGAATGAGTTCCGC
GACGTGTCGCTGTCGCATCCCCAGATTGCCCTGATGTCCTATTCGACCAC
CATCTAGAAGCTTTCTAGACCAT

BS15218.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4025-RA 741 CG4025-PA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4025-RA 1240 CG4025-RA 118..859 17..758 3710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2077452..2077841 204..593 1950 100 Plus
X 23542271 X 2077907..2078074 591..758 840 100 Plus
X 23542271 X 2077218..2077339 82..203 610 100 Plus
X 23542271 X 2077083..2077150 17..84 340 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:52:03 has no hits.

BS15218.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:23 Download gff for BS15218.complete
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 1..741 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:43 Download gff for BS15218.complete
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 96..847 10..763 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:25 Download gff for BS15218.complete
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 118..858 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:23 Download gff for BS15218.complete
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 96..847 10..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:58 Download gff for BS15218.complete
Subject Subject Range Query Range Percent Splice Strand
CG4025-RA 118..858 17..757 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:58 Download gff for BS15218.complete
Subject Subject Range Query Range Percent Splice Strand
X 2077083..2077147 17..81 100 -> Plus
X 2077218..2077339 82..203 100 -> Plus
X 2077452..2077839 204..591 100 -> Plus
X 2077908..2078073 592..757 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:25 Download gff for BS15218.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1971116..1971180 17..81 100 -> Plus
arm_X 1971251..1971372 82..203 100 -> Plus
arm_X 1971941..1972106 592..757 100   Plus
arm_X 1971485..1971872 204..591 100 -> Plus

BS15218.pep Sequence

Translation from 16 to 756

> BS15218.pep
MSQVYLLPVLTFLIFQVTFLGTYIFAVLEGHVVPTVPYISDAATYSPESC
VFGQLINIGSVLLGITIYVRYRQVLQLYEHHPDLDGSVLRQNRLALWFGL
VSCLGISFVGNFQETNVRIVHFIGAFCCFGCGTLYFWMQALISYLIFPMS
GTRINAHLRLGMSVVCTILFILLAVTGVMSHILFKGQNPRKWYPSDGGWY
FHVVSSISEWVIATVFSFFILSFTNEFRDVSLSHPQIALMSYSTTI*

BS15218.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4025-PA 246 CG4025-PA 1..246 1..246 1294 100 Plus