Clone Sequence Records
BS15226.complete Sequence
959 bp assembled on 2010-02-09
GenBank Submission: KX801359
> BS15226.complete
GAAGTTATCAGTCGACATGGCTAAAGTCTGGGCCATACTGGCCATAGCGC
TATTTCTAGGAGCACTGGCCTCCGGCGAAAGTCTTTCAAGCGAAACGGCT
GGAAAGATAGAGCCGAAGATCGTGGGCGGCTATGATGCGTCCATAGAACA
GGTATCGTACCAGGTGTCCATTCGCCTCACCGCCAACGACAAGAAGAGCT
ATGGATCTGGTCACCTATGCGGTGGGGTGGTCATTTCCCAACGTTTGGTG
GCCACCGCCGCCCACTGCTGTTACATCACCGACAAGAAGAAGTACCGAAC
TGCTGGCGAATTTGTCCTGGTCATGGGCAGCACCTACCTGACGAGCTCCA
CCGATCGCACTTTGATGTACTACCTGCAGCAGCTAATTACGCACGAGAAT
TATAATCCGGACGCGTTGACCAACGACATTGCCCTGATGTTCATCAATGG
ATATATACCCTGGAATTGGCCAACTGTAACGGCCCTGGCGTTGAACAGCC
AACTTGTGGCCACAAACACCGATTGCCTGATCTCCGGATGGGGTCTGCTC
CAGCAGAACGGAACATTTAGTAGTAATACTCTGCAGGCCGCGACGGTGCC
CATAGTGTCGTATACAACCTGTCGCATTTCATACAATTCGATTCCGGTTT
CCCAGGTGTGCGCCGGCTATTTGAGTGGCGGAGTGGACGCCTGCCAGGGC
GACTCCGGCGGACCCATGAGCTGCAACGGAATGTTGGCCGGAATCGTTTC
GTACGGCGCTGGATGCGCAGCACCTGGTTATCCGGGTGTCTACACAAATG
TGTCGTACTATTACGATTGGATTGTTCAAAAGAATAGCTCCCTCAACTAT
ACCATCTATCATAATGGAGGAGTGCGGCAGGGATCGAGTTGGTCCTACCT
GGGCATTCTTCCACTCCTTGTGGCCTTCCTCTTGGAACTCTGAAAGCTTT
CTAGACCAT
BS15226.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6041-RA | 927 | CG6041-PA | 1..927 | 17..943 | 4635 | 100 | Plus |
CG32755-RA | 948 | CG32755-PA | 640..799 | 650..809 | 185 | 74.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6041-RA | 1109 | CG6041-RA | 90..1017 | 17..944 | 4640 | 100 | Plus |
CG32756-RB | 2397 | CG32756-RB | 2293..2358 | 17..82 | 330 | 100 | Plus |
CG32755-RA | 1347 | CG32755-RA | 765..924 | 650..809 | 185 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:27:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5949726..5950116 | 554..944 | 1955 | 100 | Plus |
X | 23542271 | X | 5949351..5949630 | 277..556 | 1400 | 100 | Plus |
X | 23542271 | X | 5949090..5949285 | 81..276 | 980 | 100 | Plus |
X | 23542271 | X | 5948249..5948314 | 17..82 | 330 | 100 | Plus |
X | 23542271 | X | 5951129..5951288 | 650..809 | 185 | 74.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:27:25 has no hits.
BS15226.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:23 Download gff for
BS15226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6041-RA | 60..985 | 17..942 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:39 Download gff for
BS15226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6041-RA | 90..1015 | 17..942 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:48 Download gff for
BS15226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6041-RA | 60..985 | 17..942 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:09 Download gff for
BS15226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6041-RA | 90..1015 | 17..942 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:09 Download gff for
BS15226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5948249..5948312 | 17..80 | 100 | -> | Plus |
X | 5949090..5949285 | 81..276 | 100 | -> | Plus |
X | 5949351..5949630 | 277..556 | 100 | -> | Plus |
X | 5949729..5950114 | 557..942 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:39 Download gff for
BS15226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5842282..5842345 | 17..80 | 100 | -> | Plus |
arm_X | 5843123..5843318 | 81..276 | 100 | -> | Plus |
arm_X | 5843384..5843663 | 277..556 | 100 | -> | Plus |
arm_X | 5843762..5844147 | 557..942 | 100 | | Plus |
BS15226.3prime Sequence
827 bp (791 high quality bases) assembled on 2006-10-24
> BS15226.3prime
ATGGTCTAGAAAGCTTTCCCACTTTCCGGGAGGAAGGCCACAAGGAGTGG
AAGAATGCCCAGGTAGGACCAACTCGATCCCTGCCGCACTCCTCCACTAT
GAGAGATGGTATAGTTGAGGGAGCTATTCTTTTGAACAATCCAATCGTAA
TAGTACGACACATTTGTGTAGACACCCGGATAACCAGGTGCTGCGCATCC
AGCGCCGTACGAAACGATTCCGGCCAACATTCCGTTGCAGCTCATGGGTC
CGCCGGAGTCGCCCTGGCAGGCGTCCACTCCGCCACTCAAATAGCCGGCG
CACACCTGGGAAACCGGAATCGAATTGTATGAAATGCGACAGGTTGTATA
CGACACTATGGGCACCGTCGCGGCCTGCAGAGTATTACTACTAAATGTTC
CGTTCTGCTGGAGCAGACCCCATCCGGAGATCAGGCAATCGGTGTTTGTG
GCCACAAGTTGGCTGTTCAACGCCAGGGCCGTTACAGTTGGCCAATTCCA
GGGTATATATCCATTGATGAACATCAGGGCAATGTCGTTGGTCAACGCGT
CCGGATTATAATTCTCGTGCGTAATTAGCTGCTGCAGGTAGTACATCAAA
GTGCGATCGGTGGAGCTCGTCAGGTAGGTGCTGCCCATGACCAGGACAAA
TTCGCCAGCAGTTCGGTACTTCTTCTTGTCGGTGATGTAACAGCAGTGGG
CGGCGGTGGCCACCAAACGTTGGGAAATGACCACCCCACCGCATAGGTGA
CCAGATCCATAGCTCTTCTTGTCGTTGGCGGTGAGGCGAATGGACACCTG
GTACGATACCTGTTCTATGGACGCATC
BS15226.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6041-PA | 927 | CG6041-RA | 118..915 | 827..30 | 3940 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6041-RA | 1109 | CG6041-RA | 207..1004 | 827..30 | 3960 | 99.7 | Minus |
CG32755-RA | 1347 | CG32755-RA | 765..924 | 311..152 | 185 | 75.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:29:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5949726..5950103 | 407..30 | 1860 | 99.5 | Minus |
X | 23542271 | X | 5949351..5949630 | 684..405 | 1400 | 100 | Minus |
X | 23542271 | X | 5949143..5949285 | 827..685 | 715 | 100 | Minus |
X | 23542271 | X | 5951129..5951288 | 311..152 | 185 | 74.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:29:31 has no hits.
BS15226.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:27 Download gff for
BS15226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6041-PA | 118..921 | 24..827 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:54:58 Download gff for
BS15226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6041-PA | 118..921 | 24..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:55:06 Download gff for
BS15226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6041-RA | 207..1010 | 24..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:59:37 Download gff for
BS15226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6041-RA | 207..1010 | 24..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:59:37 Download gff for
BS15226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5949143..5949285 | 685..827 | 100 | -> | Minus |
X | 5949351..5949630 | 405..684 | 100 | -> | Minus |
X | 5949729..5950102 | 31..404 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:55:06 Download gff for
BS15226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5843762..5844135 | 31..404 | 99 | -> | Minus |
arm_X | 5843176..5843318 | 685..827 | 100 | -> | Minus |
arm_X | 5843384..5843663 | 405..684 | 100 | -> | Minus |
BS15226.5prime Sequence
868 bp (774 high quality bases) assembled on 2006-10-24
> BS15226.5prime
GAAGTTATCAGTCGACATGGCTAAAGTCTGGGCCATACTGGCCATAGCGC
TATTTCTAGGAGCACTGGCCTCCGGCGAAAGTCTTTCAAGCGAAACGGCT
GGAAAGATAGAGCCGAAGATCGTGGGCGGCTATGATGCGTCCATAGAACA
GGTATCGTACCAGGTGTCCATTCGCCTCACCGCCAACGACAAGAAGAGCT
ATGGATCTGGTCACCTATGCGGTGGGGTGGTCATTTCCCAACGTTTGGTG
GCCACCGCCGCCCACTGCTGTTACATCACCGACAAGAAGAAGTACCGAAC
TGCTGGCGAATTTGTCCTGGTCATGGGCAGCACCTACCTGACGAGCTCCA
CCGATCGCACTTTGATGTACTACCTGCAGCAGCTAATTACGCACGAGAAT
TATAATCCGGACGCGTTGACCAACGACATTGCCCTGATGTTCATCAATGG
ATATATACCCTGGAATTGGCCAACTGTAACGGCCCTGGCGTTGAACAGCC
AACTTGTGGCCACAAACACCGATTGCCTGATCTCCGGATGGGGTCTGCTC
CAGCAGAACGGAACATTTAGTAGTAATACTCTGCAGGCCGCGACGGTGCC
CATAGTGTCGTATACAACCTGTCGCATTTCATACAATTCGATTCCGGTTT
CCCAGGTGTGCGCCGGCTATTTGAGTGGCGGAGTGGACGCCTGCCAGGGC
GACTCCGGCGGACCCATGAGCTGCAACGGAATGTTGGCCGGAATCGTTTC
GTACGGCGCTGGATGCGCAGCACCTGGTTATCCGGGTGTCTACACAAATG
TGTCGTACTATTACGATTGGATTGTTCAAAAGAATAGCTCCCTCAACTAT
ACCATCTATCATAATGGA
BS15226.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6041-PA | 927 | CG6041-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6041-RA | 1109 | CG6041-RA | 90..941 | 17..868 | 4260 | 100 | Plus |
CG32756-RB | 2397 | CG32756-RB | 2293..2358 | 17..82 | 330 | 100 | Plus |
CG32755-RA | 1347 | CG32755-RA | 765..924 | 650..809 | 185 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5949726..5950040 | 554..868 | 1575 | 100 | Plus |
X | 23542271 | X | 5949351..5949630 | 277..556 | 1400 | 100 | Plus |
X | 23542271 | X | 5949090..5949285 | 81..276 | 980 | 100 | Plus |
X | 23542271 | X | 5948249..5948314 | 17..82 | 330 | 100 | Plus |
X | 23542271 | X | 5951129..5951288 | 650..809 | 185 | 74.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:55:06 has no hits.
BS15226.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:28 Download gff for
BS15226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6041-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:00 Download gff for
BS15226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6041-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:13 Download gff for
BS15226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6041-RA | 74..940 | 2..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:49:53 Download gff for
BS15226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6041-RA | 74..940 | 2..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:49:53 Download gff for
BS15226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5948233..5948312 | 2..80 | 93 | -> | Plus |
X | 5949090..5949285 | 81..276 | 100 | -> | Plus |
X | 5949351..5949630 | 277..556 | 100 | -> | Plus |
X | 5949729..5950039 | 557..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:13 Download gff for
BS15226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5842266..5842345 | 2..80 | 93 | -> | Plus |
arm_X | 5843123..5843318 | 81..276 | 100 | -> | Plus |
arm_X | 5843384..5843663 | 277..556 | 100 | -> | Plus |
arm_X | 5843762..5844072 | 557..867 | 100 | | Plus |
BS15226.pep Sequence
Translation from 16 to 942
> BS15226.pep
MAKVWAILAIALFLGALASGESLSSETAGKIEPKIVGGYDASIEQVSYQV
SIRLTANDKKSYGSGHLCGGVVISQRLVATAAHCCYITDKKKYRTAGEFV
LVMGSTYLTSSTDRTLMYYLQQLITHENYNPDALTNDIALMFINGYIPWN
WPTVTALALNSQLVATNTDCLISGWGLLQQNGTFSSNTLQAATVPIVSYT
TCRISYNSIPVSQVCAGYLSGGVDACQGDSGGPMSCNGMLAGIVSYGAGC
AAPGYPGVYTNVSYYYDWIVQKNSSLNYTIYHNGGVRQGSSWSYLGILPL
LVAFLLEL*
BS15226.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6041-PA | 308 | CG6041-PA | 1..308 | 1..308 | 1618 | 100 | Plus |
CG32755-PA | 315 | CG32755-PA | 1..315 | 1..308 | 663 | 45 | Plus |
CG14780-PA | 302 | CG14780-PA | 30..270 | 32..269 | 467 | 38.1 | Plus |
etaTry-PA | 262 | CG12386-PA | 8..260 | 7..275 | 451 | 39.7 | Plus |
CG6048-PA | 362 | CG6048-PA | 7..286 | 7..271 | 426 | 36.2 | Plus |