Clone Sequence Records
BS15229.3prime Sequence
561 bp (561 high quality bases) assembled on 2006-10-24
> BS15229.3prime
ATGGTCTAGAAAGCTTTTCCCTGACGGTCTCGATGAGGGTCTTCACGTAG
TCATCGTATTGGGCCTGGAAGAAGTTGCCGGCCACGGGACCGCCGAAGCT
GTACTTCTGGATGTAGTCGCGGGCCTTGACGTTGATGCGGCCAGTGCGGC
TGGTCTTGGACACGAACTTCTCGGTGGTGATCTTGTCGTTCTGCTTGAAC
ACCAGGAAGACGTAGCGGTGCAGGCCGGTTCCCTCGCGGGGTCCAGCACC
GATGTACTCGGCGATGGTCTGGCCCTCGGACACCTTGTTGCCGGGAATGT
TGATCACCAGCCAGTGGAGCAGCTCACGGAACTTGGGGTCCTCGCGGCTG
GGTGCGTCGGGGTCCACCAACAGGATGGTGTACAGGGAGTTGGGCTCGGC
ATCGAAGACGACAGTGGGCTGGTCCTTCACCTGAGTGGGAGTCAGCTCCT
TGCCCAGCTCAACCTGAACGCCGGAAGGATAGGTGATGGTGGCCTTGGAG
GCGGGCTTGACGTCGATGATGTCGGGAATAATGCCGGCGGTGTCCATGTC
GACTGATAACT
BS15229.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18594-PA | 531 | CG18594-RA | 1..521 | 547..27 | 2605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pebp1-RA | 646 | CG18594-RA | 56..582 | 549..23 | 2620 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22466089..22466615 | 549..23 | 2620 | 99.8 | Minus |
| 3R | 32079331 | 3R | 6344653..6344827 | 365..191 | 215 | 74.9 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:20:45 has no hits.
BS15229.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:34 Download gff for
BS15229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18594-PA | 1..531 | 17..547 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:08 Download gff for
BS15229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18594-PA | 1..531 | 17..547 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:42:12 Download gff for
BS15229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pebp1-RA | 47..588 | 17..558 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:47 Download gff for
BS15229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pebp1-RA | 47..588 | 17..558 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:47 Download gff for
BS15229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22466080..22466621 | 17..558 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:42:12 Download gff for
BS15229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18291802..18292343 | 17..558 | 98 | | Minus |
BS15229.5prime Sequence
561 bp (561 high quality bases) assembled on 2006-10-24
> BS15229.5prime
GAAGTTATCAGTCGACATGGACACCGCCGGCATTATTCCCGACATCATCG
ACGTCAAGCCCGCCTCCAAGGCCACCATCACCTATCCTTCCGGCGTTCAG
GTTGAGCTGGGCAAGGAGCTGACTCCCACTCAGGTGAAGGACCAGCCCAC
TGTCGTCTTCGATGCCGAGCCCAACTCCCTGTACACCATCCTGTTGGTGG
ACCCCGACGCACCCAGCCGCGAGGACCCCAAGTTCCGTGAGCTGCTCCAC
TGGCTGGTGATCAACATTCCCGGCAACAAGGTGTCCGAGGGCCAGACCAT
CGCCGAGTACATCGGTGCTGGACCCCGCGAGGGAACCGGCCTGCACCGCT
ACGTCTTCCTGGTGTTCAAGCAGAACGACAAGATCACCACCGAGAAGTTC
GTGTCCAAGACCAGCCGCACTGGCCGCATCAACGTCAAGGCCCGCGACTA
CATCCAGAAGTACAGCTTCGGCGGTCCCGTGGCCGGCAACTTCTTCCAGG
CCCAATACGATGACTACGTGAAGACCCTCATCGAGACGGTCCAGTAAAAG
CTTTCTAGACC
BS15229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18594-PA | 531 | CG18594-RA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pebp1-RA | 646 | CG18594-RA | 56..588 | 15..547 | 2665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22466089..22466621 | 15..547 | 2665 | 100 | Plus |
| 3R | 32079331 | 3R | 6344653..6344827 | 199..373 | 215 | 74.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:52:13 has no hits.
BS15229.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:35 Download gff for
BS15229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18594-PA | 1..531 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:09 Download gff for
BS15229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18594-PA | 1..531 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:54 Download gff for
BS15229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pebp1-RA | 47..591 | 6..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:37 Download gff for
BS15229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pebp1-RA | 47..591 | 6..552 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:37 Download gff for
BS15229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22466080..22466624 | 6..552 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:54 Download gff for
BS15229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18291802..18292346 | 6..552 | 98 | | Plus |
BS15229.complete Sequence
563 bp assembled on 2006-11-01
GenBank Submission: FJ637894
> BS15229.complete
GAAGTTATCAGTCGACATGGACACCGCCGGCATTATTCCCGACATCATCG
ACGTCAAGCCCGCCTCCAAGGCCACCATCACCTATCCTTCCGGCGTTCAG
GTTGAGCTGGGCAAGGAGCTGACTCCCACTCAGGTGAAGGACCAGCCCAC
TGTCGTCTTCGATGCCGAGCCCAACTCCCTGTACACCATCCTGTTGGTGG
ACCCCGACGCACCCAGCCGCGAGGACCCCAAGTTCCGTGAGCTGCTCCAC
TGGCTGGTGATCAACATTCCCGGCAACAAGGTGTCCGAGGGCCAGACCAT
CGCCGAGTACATCGGTGCTGGACCCCGCGAGGGAACCGGCCTGCACCGCT
ACGTCTTCCTGGTGTTCAAGCAGAACGACAAGATCACCACCGAGAAGTTC
GTGTCCAAGACCAGCCGCACTGGCCGCATCAACGTCAAGGCCCGCGACTA
CATCCAGAAGTACAGCTTCGGCGGTCCCGTGGCCGGCAACTTCTTCCAGG
CCCAATACGATGACTACGTGAAGACCCTCATCGAGACGGTCCAGTAAAAG
CTTTCTAGACCAT
BS15229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pebp1-RA | 531 | CG18594-PA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pebp1-RA | 646 | CG18594-RA | 56..588 | 15..547 | 2665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22466089..22466621 | 15..547 | 2665 | 100 | Plus |
| 3R | 32079331 | 3R | 6344653..6344827 | 199..373 | 215 | 74.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:35:42 has no hits.
BS15229.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:04 Download gff for
BS15229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18594-RA | 1..531 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:50 Download gff for
BS15229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18594-RA | 1..534 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:21 Download gff for
BS15229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pebp1-RA | 58..586 | 17..545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:04 Download gff for
BS15229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18594-RA | 1..534 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:10 Download gff for
BS15229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pebp1-RA | 58..586 | 17..545 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:10 Download gff for
BS15229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22466091..22466619 | 17..545 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:21 Download gff for
BS15229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18291813..18292341 | 17..545 | 100 | | Plus |
BS15229.pep Sequence
Translation from 16 to 546
> BS15229.pep
MDTAGIIPDIIDVKPASKATITYPSGVQVELGKELTPTQVKDQPTVVFDA
EPNSLYTILLVDPDAPSREDPKFRELLHWLVINIPGNKVSEGQTIAEYIG
AGPREGTGLHRYVFLVFKQNDKITTEKFVSKTSRTGRINVKARDYIQKYS
FGGPVAGNFFQAQYDDYVKTLIETVQ*
BS15229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pebp1-PA | 176 | CG18594-PA | 1..176 | 1..176 | 912 | 100 | Plus |
| CG10298-PA | 187 | CG10298-PA | 13..179 | 6..171 | 525 | 58.7 | Plus |
| CG7054-PA | 179 | CG7054-PA | 4..177 | 6..175 | 477 | 49.4 | Plus |
| CG6180-PA | 257 | CG6180-PA | 80..251 | 1..171 | 469 | 50 | Plus |
| CG17919-PA | 202 | CG17919-PA | 29..195 | 6..171 | 465 | 51.5 | Plus |
