Clone Sequence Records
BS15230.3prime Sequence
832 bp (712 high quality bases) assembled on 2006-10-24
> BS15230.3prime
ATGGTCTAGAAAGCTTCTAATATTTCTCAGTCGTCACTTCGCTCGGCGGC
GGCGACTCATTTGTTCGATTTTGAACATCGGTCACGGTGGTGAGGTCAGA
GCTCGAGGATTCCCTCGAATGCCTGTAAAACACATAGTGCTGCAGCATGA
AGAACACATCGAAGAGCACGGAAAACAGACCCAGTCCGAATTTGGTGGGA
TCACCGAAAATCGACACCCAATCATCGTAATTATGAGCATTCAGAATCAT
TTGCAGCATGCTCAGCGTTCCTCCCGTGAAATCCAGCAGAATGTTGCCGA
TGCTCCAGCCGGAGGTGCTCTTCCGGCGATAGTTCATCAGAGCTTGCGGC
ACGTACTTGATGATGGTAATGGTTAGCTTGACGTAACTGCAGTAGTACAG
AAAGTCCAGCCAATGGATGACGGATCCTCCGGCCAAACCGGCAGACACGA
CGACCACCACGGCGAAGATGGCCAATATTCCGTAGGCAATGAACGACACC
CTTTGCTGTGCTCTCTGATAGAAAAAGCACTGAAGGATCGTAATGCAGGT
GGCGAACATGGCATGCAGTGAGAAGACCACGTCGTTGAGCATCACAGGAT
TCACTCCCAGCGGATATCGCACCTCGTACTCGTTCTGCAGATCCTCGATG
AAATAGAGGCCGCAGTTGAACATGCTGTACAGGGTGAAGCCCACGATATT
GAGGGCCAGGAAATCAAAGTTCAGTCCCTCGACGGACTTGCGGCGATAGT
TGCTCCAGATCTGCGGATAGAAGGACACCGACCAGGCCACAAAGTAAACC
CAGCCAAAGATGATGGAGGTGTAAATCAAAGC
BS15230.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17119-PA | 1194 | CG17119-RA | 379..1194 | 832..17 | 4055 | 99.8 | Minus |
CG17119-PB | 1092 | CG17119-RB | 379..1089 | 832..122 | 3530 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17119-RC | 1455 | CG17119-RC | 527..1343 | 832..16 | 4070 | 99.9 | Minus |
CG17119-RA | 1495 | CG17119-RA | 567..1383 | 832..16 | 4070 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23055363..23055680 | 515..832 | 1575 | 99.7 | Plus |
3R | 32079331 | 3R | 23054888..23055179 | 226..517 | 1460 | 100 | Plus |
3R | 32079331 | 3R | 23054522..23054631 | 16..125 | 550 | 100 | Plus |
3R | 32079331 | 3R | 23054728..23054832 | 122..226 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:07:49 has no hits.
BS15230.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:36 Download gff for
BS15230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-PA | 379..1194 | 17..832 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:11 Download gff for
BS15230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-PA | 379..1194 | 17..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:50:49 Download gff for
BS15230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 567..1386 | 12..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:14 Download gff for
BS15230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 567..1386 | 12..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:14 Download gff for
BS15230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23054888..23055176 | 226..514 | 100 | <- | Plus |
3R | 23054519..23054628 | 12..122 | 99 | <- | Plus |
3R | 23054729..23054831 | 123..225 | 100 | <- | Plus |
3R | 23055363..23055680 | 515..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:50:49 Download gff for
BS15230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18880241..18880350 | 12..122 | 99 | <- | Plus |
arm_3R | 18880451..18880553 | 123..225 | 100 | <- | Plus |
arm_3R | 18880610..18880898 | 226..514 | 100 | <- | Plus |
arm_3R | 18881085..18881402 | 515..832 | 99 | | Plus |
BS15230.5prime Sequence
806 bp (709 high quality bases) assembled on 2006-10-24
> BS15230.5prime
GAAGTTATCAGTCGACATGGATTTCAGCACACACCGCCTGACCACTTTGC
TGCTCCTCCTCCTGGCCACAGTTGCCCTGGGAAATGCCCAAAGCAGTCAG
CTCACCGTCGATTCCCATGACATCACCGTTCTGCTGAACAGCAACGAGAC
TTTTCTGGTGTTCGCCAACGGATTGCTAGACAGCGACGTGGAAGTTGCGC
TGGGAACAGATTCGGAGGATCATTTGCTCCTCGATCCCGCAACGTTTGTG
TATCCAGCGGGCAGTACTCGAAATCAGTCGGTGGTGATAACTGGCCTCAA
AGCCGGCAACGTCAAAGTGGTCGCAGATAGCGATGATGCGAACAAAGAGA
TTGTGAAGGATGTGTTCGTACGCGTGACTGTGGCCAAATCGAGAGCTTTG
ATCTACACCTCCATCATCTTTGGCTGGGTTTACTTTGTGGCCTGGTCGGT
GTCCTTCTATCCGCAGATCTGGAGCAACTATCGCCGCAAGTCCGTCGAGG
GACTGAACTTTGATTTCCTGGCCCTCAATATCGTGGGCTTCACCCTGTAC
AGCATGTTCAACTGCGGCCTCTATTTCATCGAGGATCTGCAGAACGAGTA
CGAGGTGCGATATCCGCTGGGAGTGAATCCTGTGATGCTCAACGACGTGG
TCTTCTCACTGCATGCCATGTTCGCCACCTGCATTACGATCCTTCAGTGC
TTTTTCTATCAGAGAGCACAGCAAAGGGTGTCGTTCATTGCCTACGGAAA
ATTGGCCATCTTCGCCGTGGTGGTCGTCGTGTCTGCCGGTTTGGCCGGAG
GATCCG
BS15230.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17119-PA | 1194 | CG17119-RA | 1..790 | 17..806 | 3925 | 99.8 | Plus |
CG17119-PB | 1092 | CG17119-RB | 1..790 | 17..806 | 3925 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17119-RC | 1455 | CG17119-RC | 149..938 | 17..806 | 3935 | 99.9 | Plus |
CG17119-RA | 1495 | CG17119-RA | 189..978 | 17..806 | 3935 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23055363..23055723 | 712..352 | 1805 | 100 | Minus |
3R | 32079331 | 3R | 23055789..23055971 | 351..169 | 915 | 100 | Minus |
3R | 32079331 | 3R | 23056042..23056151 | 168..59 | 535 | 99.1 | Minus |
3R | 32079331 | 3R | 23055083..23055179 | 806..710 | 470 | 99 | Minus |
3R | 32079331 | 3R | 23056199..23056253 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:14:55 has no hits.
BS15230.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:37 Download gff for
BS15230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-PB | 1..790 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:12 Download gff for
BS15230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-PB | 1..790 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:32 Download gff for
BS15230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 183..978 | 10..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:04 Download gff for
BS15230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 183..978 | 10..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:04 Download gff for
BS15230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23056042..23056138 | 72..168 | 100 | <- | Minus |
3R | 23056199..23056259 | 10..71 | 95 | | Minus |
3R | 23055363..23055723 | 352..712 | 100 | <- | Minus |
3R | 23055083..23055176 | 713..806 | 98 | <- | Minus |
3R | 23055789..23055971 | 169..351 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:32 Download gff for
BS15230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18880805..18880898 | 713..806 | 98 | <- | Minus |
arm_3R | 18881085..18881445 | 352..712 | 100 | <- | Minus |
arm_3R | 18881511..18881693 | 169..351 | 100 | <- | Minus |
arm_3R | 18881764..18881860 | 72..168 | 100 | <- | Minus |
arm_3R | 18881921..18881981 | 10..71 | 95 | | Minus |
BS15230.complete Sequence
1226 bp assembled on 2006-11-01
GenBank Submission: FJ637895
> BS15230.complete
GAAGTTATCAGTCGACATGGATTTCAGCACACACCGCCTGACCACTTTGC
TGCTCCTCCTCCTGGCCACAGTTGCCCTGGGAAATGCCCAAAGCAGTCAG
CTCACCGTCGATTCCCATGACATCACCGTTCTGCTGAACAGCAACGAGAC
TTTTCTGGTGTTCGCCAACGGATTGCTAGACAGCGACGTGGAAGTTGCGC
TGGGAACAGATTCGGAGGATCATTTGCTCCTCGATCCCGCAACGTTTGTG
TATCCAGCGGGCAGTACTCGAAATCAGTCGGTGGTGATAACTGGCCTCAA
AGCCGGCAACGTCAAAGTGGTCGCAGATAGCGATGATGCGAACAAAGAGA
TTGTGAAGGATGTGTTCGTACGCGTGACTGTGGCCAAATCGAGAGCTTTG
ATCTACACCTCCATCATCTTTGGCTGGGTTTACTTTGTGGCCTGGTCGGT
GTCCTTCTATCCGCAGATCTGGAGCAACTATCGCCGCAAGTCCGTCGAGG
GACTGAACTTTGATTTCCTGGCCCTCAATATCGTGGGCTTCACCCTGTAC
AGCATGTTCAACTGCGGCCTCTATTTCATCGAGGATCTGCAGAACGAGTA
CGAGGTGCGATATCCGCTGGGAGTGAATCCTGTGATGCTCAACGACGTGG
TCTTCTCACTGCATGCCATGTTCGCCACCTGCATTACGATCCTTCAGTGC
TTTTTCTATCAGAGAGCACAGCAAAGGGTGTCGTTCATTGCCTACGGAAT
ATTGGCCATCTTCGCCGTGGTGGTCGTCGTGTCTGCCGGTTTGGCCGGAG
GATCCGTCATCCATTGGCTGGACTTTCTGTACTACTGCAGTTACGTCAAG
CTAACCATTACCATCATCAAGTACGTGCCGCAAGCTCTGATGAACTATCG
CCGGAAGAGCACCTCCGGCTGGAGCATCGGCAACATTCTGCTGGATTTCA
CGGGAGGAACGCTGAGCATGCTGCAAATGATTCTGAATGCTCATAATTAC
GATGATTGGGTGTCGATTTTCGGTGATCCCACCAAATTCGGACTGGGTCT
GTTTTCCGTGCTCTTCGATGTGTTCTTCATGCTGCAGCACTATGTGTTTT
ACAGGCATTCGAGGGAATCCTCGAGCTCTGACCTCACCACCGTGACCGAT
GTTCAAAATCGAACAAATGAGTCGCCGCCGCCGAGCGAAGTGACGACTGA
GAAATATTAGAAGCTTTCTAGACCAT
BS15230.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17119-RC | 1194 | CG17119-PC | 1..1194 | 17..1210 | 5970 | 100 | Plus |
CG17119-RA | 1194 | CG17119-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17119-RC | 1455 | CG17119-RC | 149..1343 | 17..1211 | 5975 | 100 | Plus |
CG17119-RA | 1495 | CG17119-RA | 189..1383 | 17..1211 | 5975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23055363..23055723 | 712..352 | 1805 | 100 | Minus |
3R | 32079331 | 3R | 23054888..23055179 | 1001..710 | 1460 | 100 | Minus |
3R | 32079331 | 3R | 23055789..23055971 | 351..169 | 915 | 100 | Minus |
3R | 32079331 | 3R | 23054522..23054631 | 1211..1102 | 550 | 100 | Minus |
3R | 32079331 | 3R | 23056042..23056151 | 168..59 | 535 | 99.1 | Minus |
3R | 32079331 | 3R | 23054728..23054832 | 1105..1001 | 525 | 100 | Minus |
3R | 32079331 | 3R | 23056199..23056253 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:01:53 has no hits.
BS15230.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:18 Download gff for
BS15230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 1..1194 | 17..1210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:59 Download gff for
BS15230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 182..1385 | 10..1215 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:54 Download gff for
BS15230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 189..1382 | 17..1210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:18 Download gff for
BS15230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 182..1385 | 10..1215 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:40 Download gff for
BS15230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 189..1382 | 17..1210 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:40 Download gff for
BS15230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23054523..23054628 | 1105..1210 | 100 | <- | Minus |
3R | 23054729..23054831 | 1002..1104 | 100 | <- | Minus |
3R | 23054888..23055176 | 713..1001 | 100 | <- | Minus |
3R | 23055363..23055723 | 352..712 | 100 | <- | Minus |
3R | 23055789..23055971 | 169..351 | 100 | <- | Minus |
3R | 23056042..23056138 | 72..168 | 100 | <- | Minus |
3R | 23056199..23056253 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:54 Download gff for
BS15230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18880245..18880350 | 1105..1210 | 100 | <- | Minus |
arm_3R | 18880451..18880553 | 1002..1104 | 100 | <- | Minus |
arm_3R | 18880610..18880898 | 713..1001 | 100 | <- | Minus |
arm_3R | 18881085..18881445 | 352..712 | 100 | <- | Minus |
arm_3R | 18881511..18881693 | 169..351 | 100 | <- | Minus |
arm_3R | 18881764..18881860 | 72..168 | 100 | <- | Minus |
arm_3R | 18881921..18881975 | 17..71 | 100 | | Minus |
BS15230.pep Sequence
Translation from 16 to 1209
> BS15230.pep
MDFSTHRLTTLLLLLLATVALGNAQSSQLTVDSHDITVLLNSNETFLVFA
NGLLDSDVEVALGTDSEDHLLLDPATFVYPAGSTRNQSVVITGLKAGNVK
VVADSDDANKEIVKDVFVRVTVAKSRALIYTSIIFGWVYFVAWSVSFYPQ
IWSNYRRKSVEGLNFDFLALNIVGFTLYSMFNCGLYFIEDLQNEYEVRYP
LGVNPVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAIFA
VVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTS
GWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLF
DVFFMLQHYVFYRHSRESSSSDLTTVTDVQNRTNESPPPSEVTTEKY*
BS15230.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17119-PC | 397 | CG17119-PC | 1..397 | 1..397 | 2044 | 100 | Plus |
CG17119-PA | 397 | CG17119-PA | 1..397 | 1..397 | 2044 | 100 | Plus |