Clone BS15230 Report

Search the DGRC for BS15230

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG17119-RA
Protein status:BS15230.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15230.3prime Sequence

832 bp (712 high quality bases) assembled on 2006-10-24

> BS15230.3prime
ATGGTCTAGAAAGCTTCTAATATTTCTCAGTCGTCACTTCGCTCGGCGGC
GGCGACTCATTTGTTCGATTTTGAACATCGGTCACGGTGGTGAGGTCAGA
GCTCGAGGATTCCCTCGAATGCCTGTAAAACACATAGTGCTGCAGCATGA
AGAACACATCGAAGAGCACGGAAAACAGACCCAGTCCGAATTTGGTGGGA
TCACCGAAAATCGACACCCAATCATCGTAATTATGAGCATTCAGAATCAT
TTGCAGCATGCTCAGCGTTCCTCCCGTGAAATCCAGCAGAATGTTGCCGA
TGCTCCAGCCGGAGGTGCTCTTCCGGCGATAGTTCATCAGAGCTTGCGGC
ACGTACTTGATGATGGTAATGGTTAGCTTGACGTAACTGCAGTAGTACAG
AAAGTCCAGCCAATGGATGACGGATCCTCCGGCCAAACCGGCAGACACGA
CGACCACCACGGCGAAGATGGCCAATATTCCGTAGGCAATGAACGACACC
CTTTGCTGTGCTCTCTGATAGAAAAAGCACTGAAGGATCGTAATGCAGGT
GGCGAACATGGCATGCAGTGAGAAGACCACGTCGTTGAGCATCACAGGAT
TCACTCCCAGCGGATATCGCACCTCGTACTCGTTCTGCAGATCCTCGATG
AAATAGAGGCCGCAGTTGAACATGCTGTACAGGGTGAAGCCCACGATATT
GAGGGCCAGGAAATCAAAGTTCAGTCCCTCGACGGACTTGCGGCGATAGT
TGCTCCAGATCTGCGGATAGAAGGACACCGACCAGGCCACAAAGTAAACC
CAGCCAAAGATGATGGAGGTGTAAATCAAAGC

BS15230.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-PA 1194 CG17119-RA 379..1194 832..17 4055 99.8 Minus
CG17119-PB 1092 CG17119-RB 379..1089 832..122 3530 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-RC 1455 CG17119-RC 527..1343 832..16 4070 99.9 Minus
CG17119-RA 1495 CG17119-RA 567..1383 832..16 4070 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23055363..23055680 515..832 1575 99.7 Plus
3R 32079331 3R 23054888..23055179 226..517 1460 100 Plus
3R 32079331 3R 23054522..23054631 16..125 550 100 Plus
3R 32079331 3R 23054728..23054832 122..226 525 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:07:49 has no hits.

BS15230.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:36 Download gff for BS15230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-PA 379..1194 17..832 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:11 Download gff for BS15230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-PA 379..1194 17..832 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:50:49 Download gff for BS15230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 567..1386 12..832 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:14 Download gff for BS15230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 567..1386 12..832 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:14 Download gff for BS15230.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23054888..23055176 226..514 100 <- Plus
3R 23054519..23054628 12..122 99 <- Plus
3R 23054729..23054831 123..225 100 <- Plus
3R 23055363..23055680 515..832 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:50:49 Download gff for BS15230.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18880241..18880350 12..122 99 <- Plus
arm_3R 18880451..18880553 123..225 100 <- Plus
arm_3R 18880610..18880898 226..514 100 <- Plus
arm_3R 18881085..18881402 515..832 99   Plus

BS15230.5prime Sequence

806 bp (709 high quality bases) assembled on 2006-10-24

> BS15230.5prime
GAAGTTATCAGTCGACATGGATTTCAGCACACACCGCCTGACCACTTTGC
TGCTCCTCCTCCTGGCCACAGTTGCCCTGGGAAATGCCCAAAGCAGTCAG
CTCACCGTCGATTCCCATGACATCACCGTTCTGCTGAACAGCAACGAGAC
TTTTCTGGTGTTCGCCAACGGATTGCTAGACAGCGACGTGGAAGTTGCGC
TGGGAACAGATTCGGAGGATCATTTGCTCCTCGATCCCGCAACGTTTGTG
TATCCAGCGGGCAGTACTCGAAATCAGTCGGTGGTGATAACTGGCCTCAA
AGCCGGCAACGTCAAAGTGGTCGCAGATAGCGATGATGCGAACAAAGAGA
TTGTGAAGGATGTGTTCGTACGCGTGACTGTGGCCAAATCGAGAGCTTTG
ATCTACACCTCCATCATCTTTGGCTGGGTTTACTTTGTGGCCTGGTCGGT
GTCCTTCTATCCGCAGATCTGGAGCAACTATCGCCGCAAGTCCGTCGAGG
GACTGAACTTTGATTTCCTGGCCCTCAATATCGTGGGCTTCACCCTGTAC
AGCATGTTCAACTGCGGCCTCTATTTCATCGAGGATCTGCAGAACGAGTA
CGAGGTGCGATATCCGCTGGGAGTGAATCCTGTGATGCTCAACGACGTGG
TCTTCTCACTGCATGCCATGTTCGCCACCTGCATTACGATCCTTCAGTGC
TTTTTCTATCAGAGAGCACAGCAAAGGGTGTCGTTCATTGCCTACGGAAA
ATTGGCCATCTTCGCCGTGGTGGTCGTCGTGTCTGCCGGTTTGGCCGGAG
GATCCG

BS15230.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-PA 1194 CG17119-RA 1..790 17..806 3925 99.8 Plus
CG17119-PB 1092 CG17119-RB 1..790 17..806 3925 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-RC 1455 CG17119-RC 149..938 17..806 3935 99.9 Plus
CG17119-RA 1495 CG17119-RA 189..978 17..806 3935 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23055363..23055723 712..352 1805 100 Minus
3R 32079331 3R 23055789..23055971 351..169 915 100 Minus
3R 32079331 3R 23056042..23056151 168..59 535 99.1 Minus
3R 32079331 3R 23055083..23055179 806..710 470 99 Minus
3R 32079331 3R 23056199..23056253 71..17 275 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:14:55 has no hits.

BS15230.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:37 Download gff for BS15230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-PB 1..790 17..806 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:12 Download gff for BS15230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-PB 1..790 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:32 Download gff for BS15230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 183..978 10..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:04 Download gff for BS15230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 183..978 10..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:04 Download gff for BS15230.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23056042..23056138 72..168 100 <- Minus
3R 23056199..23056259 10..71 95   Minus
3R 23055363..23055723 352..712 100 <- Minus
3R 23055083..23055176 713..806 98 <- Minus
3R 23055789..23055971 169..351 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:32 Download gff for BS15230.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18880805..18880898 713..806 98 <- Minus
arm_3R 18881085..18881445 352..712 100 <- Minus
arm_3R 18881511..18881693 169..351 100 <- Minus
arm_3R 18881764..18881860 72..168 100 <- Minus
arm_3R 18881921..18881981 10..71 95   Minus

BS15230.complete Sequence

1226 bp assembled on 2006-11-01

GenBank Submission: FJ637895

> BS15230.complete
GAAGTTATCAGTCGACATGGATTTCAGCACACACCGCCTGACCACTTTGC
TGCTCCTCCTCCTGGCCACAGTTGCCCTGGGAAATGCCCAAAGCAGTCAG
CTCACCGTCGATTCCCATGACATCACCGTTCTGCTGAACAGCAACGAGAC
TTTTCTGGTGTTCGCCAACGGATTGCTAGACAGCGACGTGGAAGTTGCGC
TGGGAACAGATTCGGAGGATCATTTGCTCCTCGATCCCGCAACGTTTGTG
TATCCAGCGGGCAGTACTCGAAATCAGTCGGTGGTGATAACTGGCCTCAA
AGCCGGCAACGTCAAAGTGGTCGCAGATAGCGATGATGCGAACAAAGAGA
TTGTGAAGGATGTGTTCGTACGCGTGACTGTGGCCAAATCGAGAGCTTTG
ATCTACACCTCCATCATCTTTGGCTGGGTTTACTTTGTGGCCTGGTCGGT
GTCCTTCTATCCGCAGATCTGGAGCAACTATCGCCGCAAGTCCGTCGAGG
GACTGAACTTTGATTTCCTGGCCCTCAATATCGTGGGCTTCACCCTGTAC
AGCATGTTCAACTGCGGCCTCTATTTCATCGAGGATCTGCAGAACGAGTA
CGAGGTGCGATATCCGCTGGGAGTGAATCCTGTGATGCTCAACGACGTGG
TCTTCTCACTGCATGCCATGTTCGCCACCTGCATTACGATCCTTCAGTGC
TTTTTCTATCAGAGAGCACAGCAAAGGGTGTCGTTCATTGCCTACGGAAT
ATTGGCCATCTTCGCCGTGGTGGTCGTCGTGTCTGCCGGTTTGGCCGGAG
GATCCGTCATCCATTGGCTGGACTTTCTGTACTACTGCAGTTACGTCAAG
CTAACCATTACCATCATCAAGTACGTGCCGCAAGCTCTGATGAACTATCG
CCGGAAGAGCACCTCCGGCTGGAGCATCGGCAACATTCTGCTGGATTTCA
CGGGAGGAACGCTGAGCATGCTGCAAATGATTCTGAATGCTCATAATTAC
GATGATTGGGTGTCGATTTTCGGTGATCCCACCAAATTCGGACTGGGTCT
GTTTTCCGTGCTCTTCGATGTGTTCTTCATGCTGCAGCACTATGTGTTTT
ACAGGCATTCGAGGGAATCCTCGAGCTCTGACCTCACCACCGTGACCGAT
GTTCAAAATCGAACAAATGAGTCGCCGCCGCCGAGCGAAGTGACGACTGA
GAAATATTAGAAGCTTTCTAGACCAT

BS15230.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-RC 1194 CG17119-PC 1..1194 17..1210 5970 100 Plus
CG17119-RA 1194 CG17119-PA 1..1194 17..1210 5970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-RC 1455 CG17119-RC 149..1343 17..1211 5975 100 Plus
CG17119-RA 1495 CG17119-RA 189..1383 17..1211 5975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23055363..23055723 712..352 1805 100 Minus
3R 32079331 3R 23054888..23055179 1001..710 1460 100 Minus
3R 32079331 3R 23055789..23055971 351..169 915 100 Minus
3R 32079331 3R 23054522..23054631 1211..1102 550 100 Minus
3R 32079331 3R 23056042..23056151 168..59 535 99.1 Minus
3R 32079331 3R 23054728..23054832 1105..1001 525 100 Minus
3R 32079331 3R 23056199..23056253 71..17 275 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:01:53 has no hits.

BS15230.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:18 Download gff for BS15230.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 1..1194 17..1210 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:59 Download gff for BS15230.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 182..1385 10..1215 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:54 Download gff for BS15230.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 189..1382 17..1210 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:18 Download gff for BS15230.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 182..1385 10..1215 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:40 Download gff for BS15230.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 189..1382 17..1210 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:40 Download gff for BS15230.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23054523..23054628 1105..1210 100 <- Minus
3R 23054729..23054831 1002..1104 100 <- Minus
3R 23054888..23055176 713..1001 100 <- Minus
3R 23055363..23055723 352..712 100 <- Minus
3R 23055789..23055971 169..351 100 <- Minus
3R 23056042..23056138 72..168 100 <- Minus
3R 23056199..23056253 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:54 Download gff for BS15230.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18880245..18880350 1105..1210 100 <- Minus
arm_3R 18880451..18880553 1002..1104 100 <- Minus
arm_3R 18880610..18880898 713..1001 100 <- Minus
arm_3R 18881085..18881445 352..712 100 <- Minus
arm_3R 18881511..18881693 169..351 100 <- Minus
arm_3R 18881764..18881860 72..168 100 <- Minus
arm_3R 18881921..18881975 17..71 100   Minus

BS15230.pep Sequence

Translation from 16 to 1209

> BS15230.pep
MDFSTHRLTTLLLLLLATVALGNAQSSQLTVDSHDITVLLNSNETFLVFA
NGLLDSDVEVALGTDSEDHLLLDPATFVYPAGSTRNQSVVITGLKAGNVK
VVADSDDANKEIVKDVFVRVTVAKSRALIYTSIIFGWVYFVAWSVSFYPQ
IWSNYRRKSVEGLNFDFLALNIVGFTLYSMFNCGLYFIEDLQNEYEVRYP
LGVNPVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAIFA
VVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTS
GWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLF
DVFFMLQHYVFYRHSRESSSSDLTTVTDVQNRTNESPPPSEVTTEKY*

BS15230.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-PC 397 CG17119-PC 1..397 1..397 2044 100 Plus
CG17119-PA 397 CG17119-PA 1..397 1..397 2044 100 Plus