Clone BS15233 Report

Search the DGRC for BS15233

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptSeipin-RA
Protein status:BS15233.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15233.3prime Sequence

812 bp (710 high quality bases) assembled on 2006-10-24

> BS15233.3prime
ATGGTCTAGAAAGCTTTCAATGGTCCGCGGTGGTCTTCTTTGTGGGACGC
TTACGCAGCGCATCGGGCGATTCGCGCTTGCCACTGCGGGATTTCTTGAC
CAGCACCAAGTCATCGGCATCGACGTCGCTCAGCGTGTCGCCGCCCACGT
CCGCAATATCGGACTTATCACTGTAGGCAACCAGGTCGTCGTCGTCGTCG
CGCAGGCTGCTCGCTTTGGAGTGTATTACGCCGGGCTCGAGCGACTTCGT
GAGCCGGGCGTACTTGATTTGCACGCTATGCAGCCACTTGGCGTCGGACC
AGTGGTACCAGCTGAGCAGAAAGACGACCAGTATAAAGAACAGATTGGTG
CTAATGGCCACTATGGCCGACAGTACGGGCCAGTTGAACATGATGTACCG
CAGACCGGTAAAATCGGCAACTATGTGCAGGGTGACCGTGTAGAACTGGA
TCTTCTGCGACTGTATCTCCACGTAGACATCCGTTATGGGATGTTGTCGC
TCCTCCAGATACCGTGAGAATATCTCAACTGGCACCTGCTGGAACTCCTC
TTTCCAGCCAAGCACATAGAGCGGACTCAGGACCCACGTGGAGATCATGC
GGATCAGCGGCGAACGATAGCGCATCATGGCAGACCGACAGGAGTGACCC
CTCAGCATCGAGTCGTAGTCCCTCATCTCGGCGCACACCATGAACATGCC
CAGCTCGAGATTTTGCGGCGACTCCGGCATGTCGATGTTCCCGATCACCT
TGTACGCCTGGCCAACCATCAGGAGTTGCTGCTTCTTCGTCAGCGAAACG
TGCGCGTGCGGA

BS15233.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9904-PA 1113 CG9904-RA 318..1113 812..17 3830 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
Seipin-RA 2045 CG9904-RA 829..1626 812..15 3900 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2620858..2621312 812..358 2200 98.9 Minus
X 23542271 X 2621378..2621721 358..15 1705 99.7 Minus
Blast to na_te.dros performed on 2015-02-10 22:21:06 has no hits.

BS15233.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:43 Download gff for BS15233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9904-PA 319..1113 17..811 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:20 Download gff for BS15233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9904-PA 319..1113 17..811 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:21:11 Download gff for BS15233.3prime
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 830..1626 15..811 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:57 Download gff for BS15233.3prime
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 830..1626 15..811 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:57 Download gff for BS15233.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2620859..2621312 358..811 98 -> Minus
X 2621379..2621721 15..357 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:21:11 Download gff for BS15233.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2514892..2515345 358..811 98 -> Minus
arm_X 2515412..2515754 15..357 99   Minus

BS15233.5prime Sequence

808 bp (705 high quality bases) assembled on 2006-10-24

> BS15233.5prime
GAAGTTATCAGTCGACATGAACATCCTGCTGCGCTTAATCGTCTTCGCCC
TGGATCCTCTGGGTCTGGGCCGACGTTTCCTCATCCGGCCTGCCGTGAAT
CTGGGCTGGAACGTCTACGATCGCGTGCGCAGCAAGGCGGACGAGAAGGT
GGGCACGGTGCGAGAGCTGGTCCTCCGGCTGGGCCTCATCGCCTTCGCCG
TGGTGCTCATCATCTGGCTGGCGGTCTTCATGTACGCCGCCTTCTACTAC
GTCTACATGCCGGCCATATCGCACACCCGACCCGTTCACATGCAGTTCAA
AACCTGCCTGGAGACCAGCACGCCCTGCACCTTTCCGCACGCGCACGTCT
CGCTGACGAAGAAGCAGCAACTCCTGATGGTTGGCCAGGCGTACAAGGTG
ATCGTGAACATCGACATGCCGGAGTCGCCGCAAAATCTCGAGCTGGGCAT
GTTCATGGTGTGCGCCGAGATGAGGGACTACGACTCGATGCTGAGGGGTC
ACTCCTGTCGGTCTGCCATGATGCGCTATCGTTCGCCGCTGATCCGCATG
ATCTCCACGTGGGTCCTGAGTCCGCTCTATGTGCTTGGCTGGAAAGAGGA
GTTCCAGCAGGTGCCAGTTGAGATATTCTCACGGTATCTGGAGGAGCGAC
AACATCCCATAACGGATGTCTACGTGGAGATACAGTCGCAGAAGATCCAG
TTCTACACGGTCACCCTGCACATAGTTGCCGATTTTACCGGTCTGCGGTA
CATCATGTTCAACTGGCCCGTACTTGTCGGCCATAGTGGCCATTAGCACC
AATCTGTT

BS15233.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9904-PA 1113 CG9904-RA 1..756 17..772 3655 99.3 Plus
CG9904-PA 1113 CG9904-RA 757..791 774..808 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Seipin-RA 2045 CG9904-RA 511..1302 16..808 3865 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2620825..2621312 301..789 2365 99.4 Plus
X 23542271 X 2620309..2620593 16..300 1380 98.9 Plus
Blast to na_te.dros performed on 2015-02-10 22:18:54 has no hits.

BS15233.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:43 Download gff for BS15233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9904-PA 1..791 17..808 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:22 Download gff for BS15233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9904-PA 1..791 17..808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:20:52 Download gff for BS15233.5prime
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 511..1302 16..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:41 Download gff for BS15233.5prime
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 511..1302 16..808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:41 Download gff for BS15233.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2620309..2620593 16..300 98 -> Plus
X 2620825..2621312 301..789 99 -> Plus
X 2621379..2621397 790..808 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:20:52 Download gff for BS15233.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2514342..2514626 16..300 98 -> Plus
arm_X 2514858..2515345 301..789 99 -> Plus
arm_X 2515412..2515430 790..808 100   Plus

BS15233.complete Sequence

1145 bp assembled on 2006-11-01

GenBank Submission: FJ637896

> BS15233.complete
GAAGTTATCAGTCGACATGAACATCCTGCTGCGCTTAATCGTCTTCGCCC
TGGATCCTCTGGGTCTGGGCCGACGTTTCCTCATCCGGCCTGCCGTGAAT
CTGGGCTGGAACGTCTACGATCGCGTGCGCAGCAAGGCGGACGAGAAGGT
GGGCACGGTGCGAGAGCTGGTCCTCCGGCTGGGCCTCATCGCCTTCGCCG
TGGTGCTCATCATCTGGCTGGCGGTCTTCATGTACGCCGCCTTCTACTAC
GTCTACATGCCGGCCATATCGCACACCCGACCCGTTCACATGCAGTTCAA
AACCTGCCTGGAGACCAGCACGCCCTGCACCTTTCCGCACGCGCACGTCT
CGCTGACGAAGAAGCAGCAACTCCTGATGGTTGGCCAGGCGTACAAGGTG
ATCGTGAACATCGACATGCCGGAGTCGCCGCAAAATCTCGAGCTGGGCAT
GTTCATGGTGTGCGCCGAGATGAGGGACTACGACTCGATGCTGAGGGGTC
ACTCCTGTCGGTCTGCCATGATGCGCTATCGTTCGCCGCTGATCCGCATG
ATCTCCACGTGGGTCCTGAGTCCGCTCTATGTGCTTGGCTGGAAAGAGGA
GTTCCAGCAGGTGCCAGTTGAGATATTCTCACGGTATCTGGAGGAGCGAC
AACATCCCATAACGGATGTCTACGTGGAGATACAGTCGCAGAAGATCCAG
TTCTACACGGTCACCCTGCACATAGTTGCCGATTTTACCGGTCTGCGGTA
CATCATGTTCAACTGGCCCGTACTGTCGGCCATAGTGGCCATTAGCACCA
ATCTGTTCTTTATACTGGTCGTCTTTCTGCTCAGCTGGTACCACTGGTCC
GACGCCAAGTGGCTGCATAGCGTGCAAATCAAGTACGCCCGGCTCACGAA
GTCGCTCGAGCCCGGCGTAATACACTCCAAAGCGAGCAGCCTGCGCGACG
ACGACGACGACCTGGTTGCCTACAGTGATAAGTCCGATATTGCGGACGTG
GGCGGCGACACGCTGAGCGACGTCGATGCCGATGACTTGGTGCTGGTCAA
GAAATCCCGCAGTGGCAAGCGCGAATCGCCCGATGCGCTGCGTAAGCGTC
CCACAAAGAAGACCACCGCGGACCATTGAAAGCTTTCTAGACCAT

BS15233.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Seipin-RA 1113 CG9904-PA 1..1113 17..1129 5460 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
Seipin-RA 2045 CG9904-RA 511..1626 16..1131 5475 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2620825..2621312 301..788 2395 99.4 Plus
X 23542271 X 2621378..2621721 788..1131 1705 99.7 Plus
X 23542271 X 2620309..2620593 16..300 1380 98.9 Plus
Blast to na_te.dros performed on 2014-11-27 16:55:57 has no hits.

BS15233.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:21 Download gff for BS15233.complete
Subject Subject Range Query Range Percent Splice Strand
CG9904-RA 1..1113 17..1129 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:00 Download gff for BS15233.complete
Subject Subject Range Query Range Percent Splice Strand
CG9904-RA 510..1625 16..1131 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:46 Download gff for BS15233.complete
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 512..1623 17..1128 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:21 Download gff for BS15233.complete
Subject Subject Range Query Range Percent Splice Strand
CG9904-RA 510..1625 16..1131 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:20 Download gff for BS15233.complete
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 512..1623 17..1128 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:20 Download gff for BS15233.complete
Subject Subject Range Query Range Percent Splice Strand
X 2620310..2620593 17..300 98 -> Plus
X 2620825..2621312 301..788 99 -> Plus
X 2621379..2621718 789..1128 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:46 Download gff for BS15233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2514343..2514626 17..300 98 -> Plus
arm_X 2514858..2515345 301..788 99 -> Plus
arm_X 2515412..2515751 789..1128 99   Plus

BS15233.pep Sequence

Translation from 16 to 1128

> BS15233.pep
MNILLRLIVFALDPLGLGRRFLIRPAVNLGWNVYDRVRSKADEKVGTVRE
LVLRLGLIAFAVVLIIWLAVFMYAAFYYVYMPAISHTRPVHMQFKTCLET
STPCTFPHAHVSLTKKQQLLMVGQAYKVIVNIDMPESPQNLELGMFMVCA
EMRDYDSMLRGHSCRSAMMRYRSPLIRMISTWVLSPLYVLGWKEEFQQVP
VEIFSRYLEERQHPITDVYVEIQSQKIQFYTVTLHIVADFTGLRYIMFNW
PVLSAIVAISTNLFFILVVFLLSWYHWSDAKWLHSVQIKYARLTKSLEPG
VIHSKASSLRDDDDDLVAYSDKSDIADVGGDTLSDVDADDLVLVKKSRSG
KRESPDALRKRPTKKTTADH*

BS15233.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Seipin-PA 370 CG9904-PA 1..370 1..370 1919 100 Plus