Clone Sequence Records
BS15233.3prime Sequence
812 bp (710 high quality bases) assembled on 2006-10-24
> BS15233.3prime
ATGGTCTAGAAAGCTTTCAATGGTCCGCGGTGGTCTTCTTTGTGGGACGC
TTACGCAGCGCATCGGGCGATTCGCGCTTGCCACTGCGGGATTTCTTGAC
CAGCACCAAGTCATCGGCATCGACGTCGCTCAGCGTGTCGCCGCCCACGT
CCGCAATATCGGACTTATCACTGTAGGCAACCAGGTCGTCGTCGTCGTCG
CGCAGGCTGCTCGCTTTGGAGTGTATTACGCCGGGCTCGAGCGACTTCGT
GAGCCGGGCGTACTTGATTTGCACGCTATGCAGCCACTTGGCGTCGGACC
AGTGGTACCAGCTGAGCAGAAAGACGACCAGTATAAAGAACAGATTGGTG
CTAATGGCCACTATGGCCGACAGTACGGGCCAGTTGAACATGATGTACCG
CAGACCGGTAAAATCGGCAACTATGTGCAGGGTGACCGTGTAGAACTGGA
TCTTCTGCGACTGTATCTCCACGTAGACATCCGTTATGGGATGTTGTCGC
TCCTCCAGATACCGTGAGAATATCTCAACTGGCACCTGCTGGAACTCCTC
TTTCCAGCCAAGCACATAGAGCGGACTCAGGACCCACGTGGAGATCATGC
GGATCAGCGGCGAACGATAGCGCATCATGGCAGACCGACAGGAGTGACCC
CTCAGCATCGAGTCGTAGTCCCTCATCTCGGCGCACACCATGAACATGCC
CAGCTCGAGATTTTGCGGCGACTCCGGCATGTCGATGTTCCCGATCACCT
TGTACGCCTGGCCAACCATCAGGAGTTGCTGCTTCTTCGTCAGCGAAACG
TGCGCGTGCGGA
BS15233.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9904-PA | 1113 | CG9904-RA | 318..1113 | 812..17 | 3830 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Seipin-RA | 2045 | CG9904-RA | 829..1626 | 812..15 | 3900 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2620858..2621312 | 812..358 | 2200 | 98.9 | Minus |
X | 23542271 | X | 2621378..2621721 | 358..15 | 1705 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:21:06 has no hits.
BS15233.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:43 Download gff for
BS15233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9904-PA | 319..1113 | 17..811 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:20 Download gff for
BS15233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9904-PA | 319..1113 | 17..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:21:11 Download gff for
BS15233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Seipin-RA | 830..1626 | 15..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:57 Download gff for
BS15233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Seipin-RA | 830..1626 | 15..811 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:57 Download gff for
BS15233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2620859..2621312 | 358..811 | 98 | -> | Minus |
X | 2621379..2621721 | 15..357 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:21:11 Download gff for
BS15233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2514892..2515345 | 358..811 | 98 | -> | Minus |
arm_X | 2515412..2515754 | 15..357 | 99 | | Minus |
BS15233.5prime Sequence
808 bp (705 high quality bases) assembled on 2006-10-24
> BS15233.5prime
GAAGTTATCAGTCGACATGAACATCCTGCTGCGCTTAATCGTCTTCGCCC
TGGATCCTCTGGGTCTGGGCCGACGTTTCCTCATCCGGCCTGCCGTGAAT
CTGGGCTGGAACGTCTACGATCGCGTGCGCAGCAAGGCGGACGAGAAGGT
GGGCACGGTGCGAGAGCTGGTCCTCCGGCTGGGCCTCATCGCCTTCGCCG
TGGTGCTCATCATCTGGCTGGCGGTCTTCATGTACGCCGCCTTCTACTAC
GTCTACATGCCGGCCATATCGCACACCCGACCCGTTCACATGCAGTTCAA
AACCTGCCTGGAGACCAGCACGCCCTGCACCTTTCCGCACGCGCACGTCT
CGCTGACGAAGAAGCAGCAACTCCTGATGGTTGGCCAGGCGTACAAGGTG
ATCGTGAACATCGACATGCCGGAGTCGCCGCAAAATCTCGAGCTGGGCAT
GTTCATGGTGTGCGCCGAGATGAGGGACTACGACTCGATGCTGAGGGGTC
ACTCCTGTCGGTCTGCCATGATGCGCTATCGTTCGCCGCTGATCCGCATG
ATCTCCACGTGGGTCCTGAGTCCGCTCTATGTGCTTGGCTGGAAAGAGGA
GTTCCAGCAGGTGCCAGTTGAGATATTCTCACGGTATCTGGAGGAGCGAC
AACATCCCATAACGGATGTCTACGTGGAGATACAGTCGCAGAAGATCCAG
TTCTACACGGTCACCCTGCACATAGTTGCCGATTTTACCGGTCTGCGGTA
CATCATGTTCAACTGGCCCGTACTTGTCGGCCATAGTGGCCATTAGCACC
AATCTGTT
BS15233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9904-PA | 1113 | CG9904-RA | 1..756 | 17..772 | 3655 | 99.3 | Plus |
CG9904-PA | 1113 | CG9904-RA | 757..791 | 774..808 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Seipin-RA | 2045 | CG9904-RA | 511..1302 | 16..808 | 3865 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2620825..2621312 | 301..789 | 2365 | 99.4 | Plus |
X | 23542271 | X | 2620309..2620593 | 16..300 | 1380 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:18:54 has no hits.
BS15233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:43 Download gff for
BS15233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9904-PA | 1..791 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:22 Download gff for
BS15233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9904-PA | 1..791 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:20:52 Download gff for
BS15233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Seipin-RA | 511..1302 | 16..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:41 Download gff for
BS15233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Seipin-RA | 511..1302 | 16..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:41 Download gff for
BS15233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2620309..2620593 | 16..300 | 98 | -> | Plus |
X | 2620825..2621312 | 301..789 | 99 | -> | Plus |
X | 2621379..2621397 | 790..808 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:20:52 Download gff for
BS15233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2514342..2514626 | 16..300 | 98 | -> | Plus |
arm_X | 2514858..2515345 | 301..789 | 99 | -> | Plus |
arm_X | 2515412..2515430 | 790..808 | 100 | | Plus |
BS15233.complete Sequence
1145 bp assembled on 2006-11-01
GenBank Submission: FJ637896
> BS15233.complete
GAAGTTATCAGTCGACATGAACATCCTGCTGCGCTTAATCGTCTTCGCCC
TGGATCCTCTGGGTCTGGGCCGACGTTTCCTCATCCGGCCTGCCGTGAAT
CTGGGCTGGAACGTCTACGATCGCGTGCGCAGCAAGGCGGACGAGAAGGT
GGGCACGGTGCGAGAGCTGGTCCTCCGGCTGGGCCTCATCGCCTTCGCCG
TGGTGCTCATCATCTGGCTGGCGGTCTTCATGTACGCCGCCTTCTACTAC
GTCTACATGCCGGCCATATCGCACACCCGACCCGTTCACATGCAGTTCAA
AACCTGCCTGGAGACCAGCACGCCCTGCACCTTTCCGCACGCGCACGTCT
CGCTGACGAAGAAGCAGCAACTCCTGATGGTTGGCCAGGCGTACAAGGTG
ATCGTGAACATCGACATGCCGGAGTCGCCGCAAAATCTCGAGCTGGGCAT
GTTCATGGTGTGCGCCGAGATGAGGGACTACGACTCGATGCTGAGGGGTC
ACTCCTGTCGGTCTGCCATGATGCGCTATCGTTCGCCGCTGATCCGCATG
ATCTCCACGTGGGTCCTGAGTCCGCTCTATGTGCTTGGCTGGAAAGAGGA
GTTCCAGCAGGTGCCAGTTGAGATATTCTCACGGTATCTGGAGGAGCGAC
AACATCCCATAACGGATGTCTACGTGGAGATACAGTCGCAGAAGATCCAG
TTCTACACGGTCACCCTGCACATAGTTGCCGATTTTACCGGTCTGCGGTA
CATCATGTTCAACTGGCCCGTACTGTCGGCCATAGTGGCCATTAGCACCA
ATCTGTTCTTTATACTGGTCGTCTTTCTGCTCAGCTGGTACCACTGGTCC
GACGCCAAGTGGCTGCATAGCGTGCAAATCAAGTACGCCCGGCTCACGAA
GTCGCTCGAGCCCGGCGTAATACACTCCAAAGCGAGCAGCCTGCGCGACG
ACGACGACGACCTGGTTGCCTACAGTGATAAGTCCGATATTGCGGACGTG
GGCGGCGACACGCTGAGCGACGTCGATGCCGATGACTTGGTGCTGGTCAA
GAAATCCCGCAGTGGCAAGCGCGAATCGCCCGATGCGCTGCGTAAGCGTC
CCACAAAGAAGACCACCGCGGACCATTGAAAGCTTTCTAGACCAT
BS15233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Seipin-RA | 1113 | CG9904-PA | 1..1113 | 17..1129 | 5460 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Seipin-RA | 2045 | CG9904-RA | 511..1626 | 16..1131 | 5475 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2620825..2621312 | 301..788 | 2395 | 99.4 | Plus |
X | 23542271 | X | 2621378..2621721 | 788..1131 | 1705 | 99.7 | Plus |
X | 23542271 | X | 2620309..2620593 | 16..300 | 1380 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:55:57 has no hits.
BS15233.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:21 Download gff for
BS15233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9904-RA | 1..1113 | 17..1129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:00 Download gff for
BS15233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9904-RA | 510..1625 | 16..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:46 Download gff for
BS15233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Seipin-RA | 512..1623 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:21 Download gff for
BS15233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9904-RA | 510..1625 | 16..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:20 Download gff for
BS15233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Seipin-RA | 512..1623 | 17..1128 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:20 Download gff for
BS15233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2620310..2620593 | 17..300 | 98 | -> | Plus |
X | 2620825..2621312 | 301..788 | 99 | -> | Plus |
X | 2621379..2621718 | 789..1128 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:46 Download gff for
BS15233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2514343..2514626 | 17..300 | 98 | -> | Plus |
arm_X | 2514858..2515345 | 301..788 | 99 | -> | Plus |
arm_X | 2515412..2515751 | 789..1128 | 99 | | Plus |
BS15233.pep Sequence
Translation from 16 to 1128
> BS15233.pep
MNILLRLIVFALDPLGLGRRFLIRPAVNLGWNVYDRVRSKADEKVGTVRE
LVLRLGLIAFAVVLIIWLAVFMYAAFYYVYMPAISHTRPVHMQFKTCLET
STPCTFPHAHVSLTKKQQLLMVGQAYKVIVNIDMPESPQNLELGMFMVCA
EMRDYDSMLRGHSCRSAMMRYRSPLIRMISTWVLSPLYVLGWKEEFQQVP
VEIFSRYLEERQHPITDVYVEIQSQKIQFYTVTLHIVADFTGLRYIMFNW
PVLSAIVAISTNLFFILVVFLLSWYHWSDAKWLHSVQIKYARLTKSLEPG
VIHSKASSLRDDDDDLVAYSDKSDIADVGGDTLSDVDADDLVLVKKSRSG
KRESPDALRKRPTKKTTADH*
BS15233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Seipin-PA | 370 | CG9904-PA | 1..370 | 1..370 | 1919 | 100 | Plus |