Clone Sequence Records
BS15235.3prime Sequence
724 bp (687 high quality bases) assembled on 2006-10-24
> BS15235.3prime
ATGGTCTAGAAAGCTTTTACCTGCGAGGCTTCTTTGGGGGATGATTGTGC
TCCGGCTGGGTCAGATATACTTTGTAGCTACCGTTCTTGAGCTTCTTGGT
GGAAAACCGGGCCTTGCACGCAGGCCTTCCATTGCGACGACTTCGGCAGT
GCCAGTAGGTTGTGGTATCGTGCTCGTTGGTCTTCGAGTAGGCATATTTT
TTAAACATCAGCTTTATGGTCTTCCGCTGACTTCGGATGACGCGAATGTT
GGGTATGAAGTCCATCTGTTTGCCGTCCGCATCAAATATGGCCTCAACTG
GGAGATGGCGCAATGTCGAAAGATGTCCTTGAGCCTCTGTGTTGCCCTGA
TCCCCGCTGGTGTCGACAAACGATGATTCACTGTAGTTCTGGGACTGTTG
CTTGACCACAGCCTTGGAAGTGGTCGCCGTCACTCCGCCACCGCTCGTAT
TTGCCGCAGTCTGGTTGCCAGCATCCTCGTTTTCAGTGAAGTAGCTGTCG
TCGTAGCGCATGTCTCCGTAAGTATCGTCCTCCACATAGGTGCCCTCGGC
ATCGCCGGCGGCGTCGCCATGGTCCTCAGAGTAGTCAGGTTCAGATTTCG
TGGGCAATTCCATGGGGAGATCAATGTACTCGGCTTCCTCCTGTCGAACC
TGCTGCGGCGATTGCTGGTGGAGCTTTGCTTCTGCCGCAGAGACCACAGA
GGTTTGCACGGTGATCTGTTGCGG
BS15235.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32491-PQ | 1293 | mod(mdg4)-RQ | 811..1209 | 724..326 | 1995 | 100 | Minus |
| CG32491-PJ | 1422 | mod(mdg4)-RJ | 811..1208 | 724..327 | 1990 | 100 | Minus |
| CG32491-PK | 1533 | mod(mdg4)-RK | 811..1208 | 724..327 | 1990 | 100 | Minus |
| CG32491-PR | 1428 | mod(mdg4)-RR | 811..1208 | 724..327 | 1990 | 100 | Minus |
| CG32491-PS | 1521 | mod(mdg4)-RS | 811..1208 | 724..327 | 1990 | 100 | Minus |
| CG32491-PG | 1494 | mod(mdg4)-RG | 811..1207 | 724..328 | 1985 | 100 | Minus |
| CG32491-PH | 1545 | mod(mdg4)-RH | 811..1207 | 724..328 | 1985 | 100 | Minus |
| CG32491-PI | 1626 | mod(mdg4)-RI | 811..1207 | 724..328 | 1985 | 100 | Minus |
| CG32491-PL | 1431 | mod(mdg4)-RL | 811..1207 | 724..328 | 1985 | 100 | Minus |
| CG32491-PM | 1512 | mod(mdg4)-RM | 811..1207 | 724..328 | 1985 | 100 | Minus |
| CG32491-PN | 1743 | mod(mdg4)-RN | 811..1207 | 724..328 | 1985 | 100 | Minus |
| CG32491-PO | 1638 | mod(mdg4)-RO | 811..1207 | 724..328 | 1985 | 100 | Minus |
| CG32491-PP | 1620 | mod(mdg4)-RP | 811..1207 | 724..328 | 1985 | 100 | Minus |
| CG32491-PT | 1410 | mod(mdg4)-RT | 660..1056 | 724..328 | 1985 | 100 | Minus |
| CG32491-PU | 1741 | mod(mdg4)-RU | 991..1387 | 724..328 | 1985 | 100 | Minus |
| CG32491-PV | 1397 | mod(mdg4)-RV | 647..1043 | 724..328 | 1985 | 100 | Minus |
| CG32491-PW | 1229 | mod(mdg4)-RW | 479..875 | 724..328 | 1985 | 100 | Minus |
| CG32491-PX | 1240 | mod(mdg4)-RX | 490..886 | 724..328 | 1985 | 100 | Minus |
| CG32491-PY | 1250 | mod(mdg4)-RY | 500..896 | 724..328 | 1985 | 100 | Minus |
| CG32491-PZ | 1519 | mod(mdg4)-RZ | 769..1165 | 724..328 | 1985 | 100 | Minus |
| CG32491-PA | 1458 | mod(mdg4)-RA | 811..1207 | 724..328 | 1985 | 100 | Minus |
| CG32491-PB | 1497 | mod(mdg4)-RB | 811..1207 | 724..328 | 1985 | 100 | Minus |
| CG32491-PC | 1605 | mod(mdg4)-RC | 811..1207 | 724..328 | 1985 | 100 | Minus |
| CG32491-PD | 1563 | mod(mdg4)-RD | 811..1207 | 724..328 | 1985 | 100 | Minus |
| CG32491-PE | 1812 | mod(mdg4)-RE | 811..1207 | 724..328 | 1985 | 100 | Minus |
| CG32491-PF | 1611 | mod(mdg4)-RF | 811..1207 | 724..328 | 1985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod(mdg4)-RW | 1692 | CG32491-RW | 967..1668 | 724..23 | 3495 | 99.9 | Minus |
| mod(mdg4)-RAB | 1722 | CG32491-RAB | 969..1366 | 724..327 | 1990 | 100 | Minus |
| mod(mdg4)-RB | 2251 | CG32491-RB | 969..1371 | 724..323 | 1990 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21375059..21375456 | 327..724 | 1990 | 100 | Plus |
| 3R | 32079331 | 3R | 21367908..21368214 | 329..23 | 1520 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:34:39 has no hits.
BS15235.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:47 Download gff for
BS15235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32491-PQ | 811..1209 | 326..724 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:26 Download gff for
BS15235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32491-PQ | 811..1209 | 326..724 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:30:13 Download gff for
BS15235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RW | 967..1674 | 17..724 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:47 Download gff for
BS15235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RW | 967..1674 | 17..724 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:47 Download gff for
BS15235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21375059..21375456 | 327..724 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:30:13 Download gff for
BS15235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17200781..17201178 | 327..724 | 100 | | Plus |
BS15235.5prime Sequence
772 bp (709 high quality bases) assembled on 2006-10-24
> BS15235.5prime
GAAGTTATCAGTCGACATGGCGGACGACGAGCAATTCAGCTTGTGCTGGA
ACAACTTCAACACGAATTTGTCGGCCGGCTTCCACGAGTCACTATGCCGC
GGCGACCTGGTGGACGTCTCGCTGGCCGCCGAGGGCCAAATAGTGAAGGC
CCACCGATTGGTGTTATCCGTCTGCTCGCCCTTCTTCCGCAAGATGTTCA
CTCAGATGCCGTCGAACACCCACGCTATCGTATTCCTGAACAACGTCAGC
CACTCGGCGCTGAAGGACCTCATCCAATTCATGTACTGCGGCGAGGTCAA
CGTGAAGCAGGACGCCCTGCCCGCGTTTATTAGCACCGCGGAATCGCTGC
AAATCAAGGGGCTAACGGATAACGATCCTGCGCCTCAGCCGCCGCAGGAA
TCCAGCCCGCCGCCAGCAGCACCTCATGTACAACAACAGCAAATACCGGC
TCAGCGGGTGCAGCGCCAGCAGCCTCGCGCCTCCGCCCGCTACAAGATCG
AGACCGTGGACGACGGCCTGGGCGACGAGAAACAGAGCACCACCCAGATT
GTCATCCAGACCACGGCCGCACCCCAAGCCACCATTGTACAACAGCAGCA
ACCGCAGCAGGCGGCGCAACAGATCCAATCGCAGCAGCTGCAGACGGGAA
CCACGACGACGGCGACGCTGGTGTCGACAAACAAACGCTCTGCCCAGCGC
TCCTCCCTGACCCCCGCCTCCTCGAGCGCCGGCGTGAAGCGCTCCAAGAA
AAGCACCTCCGCAAATGTTATG
BS15235.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32491-PG | 1494 | mod(mdg4)-RG | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PH | 1545 | mod(mdg4)-RH | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PI | 1626 | mod(mdg4)-RI | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PJ | 1422 | mod(mdg4)-RJ | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PK | 1533 | mod(mdg4)-RK | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PL | 1431 | mod(mdg4)-RL | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PM | 1512 | mod(mdg4)-RM | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PN | 1743 | mod(mdg4)-RN | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PO | 1638 | mod(mdg4)-RO | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PP | 1620 | mod(mdg4)-RP | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PQ | 1293 | mod(mdg4)-RQ | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PR | 1428 | mod(mdg4)-RR | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PS | 1521 | mod(mdg4)-RS | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PA | 1458 | mod(mdg4)-RA | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PB | 1497 | mod(mdg4)-RB | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PC | 1605 | mod(mdg4)-RC | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PD | 1563 | mod(mdg4)-RD | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PE | 1812 | mod(mdg4)-RE | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PF | 1611 | mod(mdg4)-RF | 1..756 | 17..772 | 3655 | 99.3 | Plus |
| CG32491-PT | 1410 | mod(mdg4)-RT | 202..605 | 369..772 | 1920 | 99 | Plus |
| CG32491-PU | 1741 | mod(mdg4)-RU | 534..936 | 370..772 | 1915 | 99 | Plus |
| CG32491-PW | 1229 | mod(mdg4)-RW | 22..424 | 370..772 | 1915 | 99 | Plus |
| CG32491-PV | 1397 | mod(mdg4)-RV | 191..592 | 371..772 | 1910 | 99 | Plus |
| CG32491-PX | 1240 | mod(mdg4)-RX | 34..435 | 371..772 | 1910 | 99 | Plus |
| CG32491-PY | 1250 | mod(mdg4)-RY | 44..445 | 371..772 | 1910 | 99 | Plus |
| CG32491-PZ | 1519 | mod(mdg4)-RZ | 313..714 | 371..772 | 1910 | 99 | Plus |
| CG32491-PT | 1410 | mod(mdg4)-RT | 1197..1410 | 17..230 | 1045 | 99.5 | Plus |
| CG32491-PU | 1741 | mod(mdg4)-RU | 1528..1741 | 17..230 | 1045 | 99.5 | Plus |
| CG32491-PW | 1229 | mod(mdg4)-RW | 1016..1229 | 17..230 | 1045 | 99.5 | Plus |
| CG32491-PV | 1397 | mod(mdg4)-RV | 1184..1397 | 17..230 | 1045 | 99.5 | Plus |
| CG32491-PX | 1240 | mod(mdg4)-RX | 1027..1240 | 17..230 | 1045 | 99.5 | Plus |
| CG32491-PY | 1250 | mod(mdg4)-RY | 1037..1250 | 17..230 | 1045 | 99.5 | Plus |
| CG32491-PZ | 1519 | mod(mdg4)-RZ | 1306..1519 | 17..230 | 1045 | 99.5 | Plus |
| CG32491-PT | 1410 | mod(mdg4)-RT | 1056..1197 | 230..371 | 710 | 100 | Plus |
| CG32491-PU | 1741 | mod(mdg4)-RU | 1387..1528 | 230..371 | 710 | 100 | Plus |
| CG32491-PW | 1229 | mod(mdg4)-RW | 875..1016 | 230..371 | 710 | 100 | Plus |
| CG32491-PV | 1397 | mod(mdg4)-RV | 1043..1184 | 230..371 | 710 | 100 | Plus |
| CG32491-PX | 1240 | mod(mdg4)-RX | 886..1027 | 230..371 | 710 | 100 | Plus |
| CG32491-PY | 1250 | mod(mdg4)-RY | 896..1037 | 230..371 | 710 | 100 | Plus |
| CG32491-PZ | 1519 | mod(mdg4)-RZ | 1165..1306 | 230..371 | 710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod(mdg4)-RAF | 1839 | CG32491-RF | 159..914 | 17..772 | 3705 | 99.3 | Plus |
| mod(mdg4)-RAE | 1596 | CG32491-RAE | 157..912 | 17..772 | 3705 | 99.3 | Plus |
| mod(mdg4)-RAD | 1689 | CG32491-RAD | 157..912 | 17..772 | 3705 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21375511..21375912 | 772..371 | 1950 | 99 | Minus |
| 3R | 32079331 | 3R | 21376819..21377032 | 230..17 | 1055 | 99.5 | Minus |
| 3R | 32079331 | 3R | 21376602..21376742 | 370..230 | 705 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 07:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6698..6922 | 411..643 | 163 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2883 | 560..666 | 147 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2421 | 589..666 | 125 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2397 | 589..660 | 121 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2430 | 590..660 | 120 | 67.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1078..1157 | 589..660 | 120 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6843 | 589..642 | 119 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6841..6917 | 589..666 | 117 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6809 | 589..666 | 116 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1471..1602 | 528..656 | 113 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6848 | 530..663 | 112 | 58.4 | Plus |
BS15235.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:48 Download gff for
BS15235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32491-PP | 1..756 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:28 Download gff for
BS15235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32491-PF | 1..756 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:50:44 Download gff for
BS15235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RAD | 148..912 | 8..772 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:46 Download gff for
BS15235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RAD | 148..912 | 8..772 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:46 Download gff for
BS15235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21375511..21375912 | 371..772 | 99 | <- | Minus |
| 3R | 21376602..21376741 | 231..370 | 100 | <- | Minus |
| 3R | 21376819..21377032 | 17..230 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:50:44 Download gff for
BS15235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17201233..17201634 | 371..772 | 99 | <- | Minus |
| arm_3R | 17202324..17202463 | 231..370 | 100 | <- | Minus |
| arm_3R | 17202541..17202754 | 17..230 | 99 | <- | Minus |
BS15235.complete Sequence
1550 bp assembled on 2012-04-25
GenBank Submission: KX803705
> BS15235.complete
GAAGTTATCAGTCGACATGGCGGACGACGAGCAATTCAGCTTGTGCTGGA
ACAACTTCAACACGAATTTGTCGGCCGGCTTCCACGAGTCACTATGCCGC
GGCGACCTGGTGGACGTCTCGCTGGCCGCCGAGGGCCAAATAGTGAAGGC
CCACCGATTGGTGTTATCCGTCTGCTCGCCCTTCTTCCGCAAGATGTTCA
CTCAGATGCCGTCGAACACCCACGCTATCGTATTCCTGAACAACGTCAGC
CACTCGGCGCTGAAGGACCTCATCCAATTCATGTACTGCGGCGAGGTCAA
CGTGAAGCAGGACGCCCTGCCCGCGTTTATTAGCACCGCGGAATCGCTGC
AAATCAAGGGGCTAACGGATAACGATCCTGCGCCTCAGCCGCCGCAGGAA
TCCAGCCCGCCGCCAGCAGCACCTCATGTACAACAACAGCAAATACCGGC
TCAGCGGGTGCAGCGCCAGCAGCCTCGCGCCTCCGCCCGCTACAAGATCG
AGACCGTGGACGACGGCCTGGGCGACGAGAAACAGAGCACCACCCAGATT
GTCATCCAGACCACGGCCGCACCCCAAGCCACCATTGTACAACAGCAGCA
ACCGCAGCAGGCGGCGCAGCAGATCCAATCGCAGCAGCTGCAGACGGGAA
CCACGACGACGGCGACGCTGGTGTCGACAAACAAACGCTCTGCCCAGCGC
TCCTCCCTGACCCCCGCCTCCTCGAGCGCCGGCGTGAAGCGCTCCAAGAC
AAGCACCTCCGCAAATGTTATGGACCCTCTCGACTCGACCACTGAAACTG
GAGCCACGACAACCGCCCAACTTGTGCCGCAACAGATCACCGTGCAAACC
TCTGTGGTCTCTGCGGCAGAAGCAAAGCTCCACCAGCAATCGCCGCAGCA
GGTTCGACAGGAGGAAGCCGAGTACATTGATCTCCCCATGGAATTGCCCA
CGAAATCTGAACCTGACTACTCTGAGGACCATGGCGACGCCGCCGGCGAT
GCCGAGGGCACCTATGTGGAGGACGATACTTACGGAGACATGCGCTACGA
CGACAGCTACTTCACTGAAAACGAGGATGCTGGCAACCAGACTGCGGCAA
ATACGAGCGGTGGCGGAGTGACGGCGACCACTTCCAAGGCTGTGGTCAAG
CAACAGTCCCAGAACTACAGTGAATCATCGTTTGTCGACACCAGCGGGGA
TCAGGGCAACACAGAGGCTCAAGGACATCTTTCGACATTGCGCCATCTCC
CAGTTGAGGCCATATTTGATGCGGACGGCAAACAGATGGACTTCATACCC
AACATTCGCGTCATCCGAAGTCAGCGGAAGACCATAAAGCTGATGTTTAA
AAAATATGCCTACTCGAAGACCAACGAGCACGATACCACAACCTACTGGC
ACTGCCGAAGTCGTCGCAATGGAAGGCCTGCGTGCAAGGCCCGGTTTTCC
ACCAAGAAGCTCAAGAACGGTAGCTACAAAGTATATCTGACCCAGCCGGA
GCACAATCATCCCCCAAAGAAGCGTCGCCTATAAAAGCTTTCTAGACCAT
BS15235.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:12:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod(mdg4)-RAD | 1220 | CG32491-PAD | 1..1209 | 17..1225 | 6000 | 99.8 | Plus |
| mod(mdg4)-RAB | 1521 | CG32491-PAB | 1..1208 | 17..1224 | 5995 | 99.8 | Plus |
| mod(mdg4)-RS | 1521 | CG32491-PS | 1..1208 | 17..1224 | 5995 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod(mdg4)-RW | 1692 | CG32491-RW | 157..1674 | 17..1534 | 7545 | 99.8 | Plus |
| mod(mdg4)-RAB | 1722 | CG32491-RAB | 159..1366 | 17..1224 | 5995 | 99.8 | Plus |
| mod(mdg4)-RY | 1698 | CG32491-RY | 157..1367 | 17..1227 | 5995 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21375059..21375912 | 1224..371 | 4240 | 99.8 | Minus |
| 3R | 32079331 | 3R | 21367908..21368220 | 1222..1534 | 1565 | 100 | Plus |
| 3R | 32079331 | 3R | 21376819..21377032 | 230..17 | 1055 | 99.5 | Minus |
| 3R | 32079331 | 3R | 21376602..21376742 | 370..230 | 705 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6698..6922 | 411..643 | 172 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2883 | 560..666 | 138 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2421 | 589..666 | 134 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2397 | 589..660 | 130 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6809 | 589..666 | 125 | 63.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1078..1157 | 589..666 | 125 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1471..1602 | 528..656 | 122 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6848 | 530..663 | 121 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6805 | 589..643 | 113 | 67.3 | Plus |
BS15235.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:33 Download gff for
BS15235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RQ | 148..1365 | 8..1225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:35 Download gff for
BS15235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RQ | 157..1365 | 17..1225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:52 Download gff for
BS15235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RW | 157..1672 | 17..1532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:43 Download gff for
BS15235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RQ | 157..1365 | 17..1225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:40 Download gff for
BS15235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RW | 157..1672 | 17..1532 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:40 Download gff for
BS15235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21376602..21376741 | 231..370 | 100 | <- | Minus |
| 3R | 21376819..21377032 | 17..230 | 99 | | Minus |
| 3R | 21375059..21375912 | 371..1224 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:52 Download gff for
BS15235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17200781..17201634 | 371..1224 | 99 | <- | Minus |
| arm_3R | 17202324..17202463 | 231..370 | 100 | <- | Minus |
| arm_3R | 17202541..17202754 | 17..230 | 99 | | Minus |
BS15235.pep Sequence
Translation from 16 to 1533
> BS15235.pep
MADDEQFSLCWNNFNTNLSAGFHESLCRGDLVDVSLAAEGQIVKAHRLVL
SVCSPFFRKMFTQMPSNTHAIVFLNNVSHSALKDLIQFMYCGEVNVKQDA
LPAFISTAESLQIKGLTDNDPAPQPPQESSPPPAAPHVQQQQIPAQRVQR
QQPRASARYKIETVDDGLGDEKQSTTQIVIQTTAAPQATIVQQQQPQQAA
QQIQSQQLQTGTTTTATLVSTNKRSAQRSSLTPASSSAGVKRSKTSTSAN
VMDPLDSTTETGATTTAQLVPQQITVQTSVVSAAEAKLHQQSPQQVRQEE
AEYIDLPMELPTKSEPDYSEDHGDAAGDAEGTYVEDDTYGDMRYDDSYFT
ENEDAGNQTAANTSGGGVTATTSKAVVKQQSQNYSESSFVDTSGDQGNTE
AQGHLSTLRHLPVEAIFDADGKQMDFIPNIRVIRSQRKTIKLMFKKYAYS
KTNEHDTTTYWHCRSRRNGRPACKARFSTKKLKNGSYKVYLTQPEHNHPP
KKRRL*
BS15235.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod(mdg4)-PW | 505 | CG32491-PW | 1..505 | 1..505 | 2605 | 100 | Plus |
| mod(mdg4)-PU | 486 | CG32491-PU | 1..477 | 1..503 | 2111 | 85.1 | Plus |
| mod(mdg4)-PAB | 506 | CG32491-PAB | 1..488 | 1..501 | 2105 | 84.8 | Plus |
| mod(mdg4)-PK | 510 | CG32491-PK | 1..490 | 1..501 | 2103 | 84.8 | Plus |
| mod(mdg4)-PJ | 473 | CG32491-PJ | 1..472 | 1..500 | 2097 | 84.8 | Plus |
