Clone BS15236 Report

Search the DGRC for BS15236

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG2034-RA
Protein status:BS15236.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15236.3prime Sequence

816 bp (704 high quality bases) assembled on 2006-10-24

> BS15236.3prime
ATGGTCTAGAAAGCTTCTAGATGCACAGATCCTCGTCCGGATCCTCCTCG
TCGAAATCGTCGTCGGCATCGGGCGTGTATATTATGTTTCCCTCAGACGG
CTCGGATGTGCGTTCGTATGGCAGGGTGAGTGCATTGCGGGCCAACACTT
CATCCTCGTCAAGCTCGATTTTGAAGGTGCTGCTGGCCGGCTCTGTGGTC
TGCTCCGCCTCGGGCGAGGGCTGCTTGGGGGAGGCACCTGCAGGCAGTCC
TCCGTCCAGCGGCGTCACCTTGAACTGGGTTTTGCTGACTTCGCAGGAGT
AGCGCCTGTTGGACACCCCTCCGCCCGGCTTGCGTGATATCAGCGAGAGT
AGTTTGTCCGATTCCAGTCGGAGGACCAGCTCGGCCAGGTACTCGCAGCC
AGCCAGGATGTAGTCGGCATGCGGATCCTGCAGGTGCTGCGGGGAGGCCC
AAAGGAACACCCGACGCACATTGTCCGAGCGGCGTAGGCGGTTGAGGAAG
CCAAATATGAAAGCAGGCGTCTGGTAGCACAGCAGGTCTGCCAATGTTGG
CAGGATGACGTTAAAGCCAGTGGAGTTGGAATCCGTAGTACTCCCAGTGT
TGTTGTTGGCGTACTTGTCGATCAGTGCCTCGAAGGTGGCCACGTGCTTA
AGGCTGACGCCGGTGGGCAGGGCCTTGATGGTATCCGCCCCCTGTCCCTG
CTCGTGCAGCAGACTGCCGATGAACTTGGGGGCAATGCGCTCCCGATTTA
GCTCATCTATTACAAGGACCATTTTCTGCTTGGTCACCACCAGGTTGGAG
AGCATGTCAACTGATA

BS15236.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2034-PA 789 CG2034-RA 1..789 805..17 3870 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2034-RB 1284 CG2034-RB 247..1035 805..17 3900 99.6 Minus
CG2034-RA 1149 CG2034-RA 112..900 805..17 3900 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2257870..2258517 758..111 3225 99.8 Minus
3L 28110227 3L 2258579..2258673 111..17 475 100 Minus
3L 28110227 3L 2257754..2257807 805..752 225 94.4 Minus
Blast to na_te.dros performed on 2015-02-10 16:27:03 has no hits.

BS15236.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:49 Download gff for BS15236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2034-PA 1..789 17..805 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:30 Download gff for BS15236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2034-PA 1..789 17..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:40:10 Download gff for BS15236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 112..903 12..805 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:58 Download gff for BS15236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 112..903 12..805 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:58 Download gff for BS15236.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2258580..2258676 12..110 97   Minus
3L 2257754..2257802 757..805 95 -> Minus
3L 2257872..2258517 111..756 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:40:10 Download gff for BS15236.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2257754..2257802 757..805 95 -> Minus
arm_3L 2257872..2258517 111..756 99 -> Minus
arm_3L 2258580..2258676 12..110 97   Minus

BS15236.5prime Sequence

740 bp (703 high quality bases) assembled on 2006-10-24

> BS15236.5prime
GAAGTTATCAGTCGACATGCTCTCCAACCTGGTGGTGACCAAGCAGAAAG
TGGTCCTCGTAATAGATGAGCTAAATCGGGAGCGCATTGCCCCCAAGTTC
ATCGGCAGTCTGCTGCACGAGCAGGGACAGGGGGCGGATACCATCAAGGC
CCTGCCCACCGGCGTCAGCCTTAAGCACGTGGCCACCTTCGAGGCACTGA
TCGACAAGTACGCCAACAACAACACTGGGAGTACTACGGATTCCAACTCC
ACTGGCTTTAACGTCATCCTGCCAACATTGGCAGACCTGCTGTGCTACCA
GACGCCTGCTTTCATATTTGGCTTCCTCAACCGCCTACGCCGCTCGGACA
ATGTGCGTCGGGTGTTCCTTTGGGCCTCCCCGCAGCACCTGCAGGATCCG
CATGCCGACTACATCCTGGCTGGCTGCGAGTACCTGGCCGAGCTGGTCCT
CCGACTGGAATCGGACAAACTACTCTCGCTGATATCACGCAAGCCGGGCG
GAGGGGTGTCCAACAGGCGCTACTCCTGCGAAGTCAGCAAAACCCAGTTC
AAGGTGACGCCGCTGGACGGAGGACTGCCTGCAGGTGCCTCCCCCAAGCA
GCCCTCGCCCGAGGCGGAGCAGACCACAGAGCCGGCCAGCAGCACCTTCA
AAATCGAGCTTGACGAGGATGAAGTGTTGGCCCGCAATGCACTCACCCTG
CCATACGAACGCACATCCGAGCCGTCTGAGGGAAAATAAT

BS15236.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2034-PA 789 CG2034-RA 1..719 17..735 3570 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2034-RB 1284 CG2034-RB 247..971 17..740 3585 99.7 Plus
CG2034-RA 1149 CG2034-RA 112..836 17..740 3585 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2257870..2258517 64..711 3225 99.8 Plus
3L 28110227 3L 2257754..2257807 17..70 255 98.1 Plus
Blast to na_te.dros performed on 2015-02-13 00:29:11 has no hits.

BS15236.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:50 Download gff for BS15236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2034-PA 1..725 17..740 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:32 Download gff for BS15236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2034-PA 1..725 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:23:35 Download gff for BS15236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 112..836 17..740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:04 Download gff for BS15236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 112..836 17..740 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:04 Download gff for BS15236.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2257754..2257802 17..65 100 -> Plus
3L 2257872..2258517 66..711 99 -> Plus
3L 2258580..2258609 712..740 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:23:35 Download gff for BS15236.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2257754..2257802 17..65 100 -> Plus
arm_3L 2257872..2258517 66..711 99 -> Plus
arm_3L 2258580..2258609 712..740 96   Plus

BS15236.complete Sequence

821 bp assembled on 2006-11-01

GenBank Submission: FJ637897

> BS15236.complete
GAAGTTATCAGTCGACATGCTCTCCAACCTGGTGGTGACCAAGCAGAAAG
TGGTCCTCGTAATAGATGAGCTAAATCGGGAGCGCATTGCCCCCAAGTTC
ATCGGCAGTCTGCTGCACGAGCAGGGACAGGGGGCGGATACCATCAAGGC
CCTGCCCACCGGCGTCAGCCTTAAGCACGTGGCCACCTTCGAGGCACTGA
TCGACAAGTACGCCAACAACAACACTGGGAGTACTACGGATTCCAACTCC
ACTGGCTTTAACGTCATCCTGCCAACATTGGCAGACCTGCTGTGCTACCA
GACGCCTGCTTTCATATTTGGCTTCCTCAACCGCCTACGCCGCTCGGACA
ATGTGCGTCGGGTGTTCCTTTGGGCCTCCCCGCAGCACCTGCAGGATCCG
CATGCCGACTACATCCTGGCTGGCTGCGAGTACCTGGCCGAGCTGGTCCT
CCGACTGGAATCGGACAAACTACTCTCGCTGATATCACGCAAGCCGGGCG
GAGGGGTGTCCAACAGGCGCTACTCCTGCGAAGTCAGCAAAACCCAGTTC
AAGGTGACGCCGCTGGACGGAGGACTGCCTGCAGGTGCCTCCCCCAAGCA
GCCCTCGCCCGAGGCGGAGCAGACCACAGAGCCGGCCAGCAGCACCTTCA
AAATCGAGCTTGACGAGGATGAAGTGTTGGCCCGCAATGCACTCACCCTG
CCATACGAACGCACATCCGAGCCGTCTGAGGGAAACATAATATACACGCC
CGATGCCGACGACGATTTCGACGAGGAGGATCCGGACGAGGATCTGTGCA
TCTAGAAGCTTTCTAGACCAT

BS15236.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2034-RB 789 CG2034-PB 1..789 17..805 3930 99.9 Plus
CG2034-RA 789 CG2034-PA 1..789 17..805 3930 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2034-RB 1284 CG2034-RB 247..1035 17..805 3930 99.9 Plus
CG2034-RA 1149 CG2034-RA 112..900 17..805 3930 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2257870..2258517 64..711 3225 99.8 Plus
3L 28110227 3L 2258579..2258673 711..805 475 100 Plus
3L 28110227 3L 2257754..2257807 17..70 255 98.1 Plus
Blast to na_te.dros performed on 2014-11-27 13:47:14 has no hits.

BS15236.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:23 Download gff for BS15236.complete
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 1..789 17..805 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:02 Download gff for BS15236.complete
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 86..877 17..810 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:48 Download gff for BS15236.complete
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 112..900 17..805 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:23 Download gff for BS15236.complete
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 86..877 17..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:58 Download gff for BS15236.complete
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 112..900 17..805 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:58 Download gff for BS15236.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2257754..2257802 17..65 100 -> Plus
3L 2257872..2258517 66..711 99 -> Plus
3L 2258580..2258673 712..805 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:48 Download gff for BS15236.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2257754..2257802 17..65 100 -> Plus
arm_3L 2257872..2258517 66..711 99 -> Plus
arm_3L 2258580..2258673 712..805 100   Plus

BS15236.pep Sequence

Translation from 16 to 804

> BS15236.pep
MLSNLVVTKQKVVLVIDELNRERIAPKFIGSLLHEQGQGADTIKALPTGV
SLKHVATFEALIDKYANNNTGSTTDSNSTGFNVILPTLADLLCYQTPAFI
FGFLNRLRRSDNVRRVFLWASPQHLQDPHADYILAGCEYLAELVLRLESD
KLLSLISRKPGGGVSNRRYSCEVSKTQFKVTPLDGGLPAGASPKQPSPEA
EQTTEPASSTFKIELDEDEVLARNALTLPYERTSEPSEGNIIYTPDADDD
FDEEDPDEDLCI*

BS15236.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2034-PB 262 CG2034-PB 1..262 1..262 1350 100 Plus
CG2034-PA 262 CG2034-PA 1..262 1..262 1350 100 Plus