Clone Sequence Records
BS15236.3prime Sequence
816 bp (704 high quality bases) assembled on 2006-10-24
> BS15236.3prime
ATGGTCTAGAAAGCTTCTAGATGCACAGATCCTCGTCCGGATCCTCCTCG
TCGAAATCGTCGTCGGCATCGGGCGTGTATATTATGTTTCCCTCAGACGG
CTCGGATGTGCGTTCGTATGGCAGGGTGAGTGCATTGCGGGCCAACACTT
CATCCTCGTCAAGCTCGATTTTGAAGGTGCTGCTGGCCGGCTCTGTGGTC
TGCTCCGCCTCGGGCGAGGGCTGCTTGGGGGAGGCACCTGCAGGCAGTCC
TCCGTCCAGCGGCGTCACCTTGAACTGGGTTTTGCTGACTTCGCAGGAGT
AGCGCCTGTTGGACACCCCTCCGCCCGGCTTGCGTGATATCAGCGAGAGT
AGTTTGTCCGATTCCAGTCGGAGGACCAGCTCGGCCAGGTACTCGCAGCC
AGCCAGGATGTAGTCGGCATGCGGATCCTGCAGGTGCTGCGGGGAGGCCC
AAAGGAACACCCGACGCACATTGTCCGAGCGGCGTAGGCGGTTGAGGAAG
CCAAATATGAAAGCAGGCGTCTGGTAGCACAGCAGGTCTGCCAATGTTGG
CAGGATGACGTTAAAGCCAGTGGAGTTGGAATCCGTAGTACTCCCAGTGT
TGTTGTTGGCGTACTTGTCGATCAGTGCCTCGAAGGTGGCCACGTGCTTA
AGGCTGACGCCGGTGGGCAGGGCCTTGATGGTATCCGCCCCCTGTCCCTG
CTCGTGCAGCAGACTGCCGATGAACTTGGGGGCAATGCGCTCCCGATTTA
GCTCATCTATTACAAGGACCATTTTCTGCTTGGTCACCACCAGGTTGGAG
AGCATGTCAACTGATA
BS15236.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2034-PA | 789 | CG2034-RA | 1..789 | 805..17 | 3870 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2034-RB | 1284 | CG2034-RB | 247..1035 | 805..17 | 3900 | 99.6 | Minus |
CG2034-RA | 1149 | CG2034-RA | 112..900 | 805..17 | 3900 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2257870..2258517 | 758..111 | 3225 | 99.8 | Minus |
3L | 28110227 | 3L | 2258579..2258673 | 111..17 | 475 | 100 | Minus |
3L | 28110227 | 3L | 2257754..2257807 | 805..752 | 225 | 94.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:27:03 has no hits.
BS15236.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:49 Download gff for
BS15236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-PA | 1..789 | 17..805 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:30 Download gff for
BS15236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-PA | 1..789 | 17..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:40:10 Download gff for
BS15236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 112..903 | 12..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:58 Download gff for
BS15236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 112..903 | 12..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:58 Download gff for
BS15236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2258580..2258676 | 12..110 | 97 | | Minus |
3L | 2257754..2257802 | 757..805 | 95 | -> | Minus |
3L | 2257872..2258517 | 111..756 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:40:10 Download gff for
BS15236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2257754..2257802 | 757..805 | 95 | -> | Minus |
arm_3L | 2257872..2258517 | 111..756 | 99 | -> | Minus |
arm_3L | 2258580..2258676 | 12..110 | 97 | | Minus |
BS15236.5prime Sequence
740 bp (703 high quality bases) assembled on 2006-10-24
> BS15236.5prime
GAAGTTATCAGTCGACATGCTCTCCAACCTGGTGGTGACCAAGCAGAAAG
TGGTCCTCGTAATAGATGAGCTAAATCGGGAGCGCATTGCCCCCAAGTTC
ATCGGCAGTCTGCTGCACGAGCAGGGACAGGGGGCGGATACCATCAAGGC
CCTGCCCACCGGCGTCAGCCTTAAGCACGTGGCCACCTTCGAGGCACTGA
TCGACAAGTACGCCAACAACAACACTGGGAGTACTACGGATTCCAACTCC
ACTGGCTTTAACGTCATCCTGCCAACATTGGCAGACCTGCTGTGCTACCA
GACGCCTGCTTTCATATTTGGCTTCCTCAACCGCCTACGCCGCTCGGACA
ATGTGCGTCGGGTGTTCCTTTGGGCCTCCCCGCAGCACCTGCAGGATCCG
CATGCCGACTACATCCTGGCTGGCTGCGAGTACCTGGCCGAGCTGGTCCT
CCGACTGGAATCGGACAAACTACTCTCGCTGATATCACGCAAGCCGGGCG
GAGGGGTGTCCAACAGGCGCTACTCCTGCGAAGTCAGCAAAACCCAGTTC
AAGGTGACGCCGCTGGACGGAGGACTGCCTGCAGGTGCCTCCCCCAAGCA
GCCCTCGCCCGAGGCGGAGCAGACCACAGAGCCGGCCAGCAGCACCTTCA
AAATCGAGCTTGACGAGGATGAAGTGTTGGCCCGCAATGCACTCACCCTG
CCATACGAACGCACATCCGAGCCGTCTGAGGGAAAATAAT
BS15236.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2034-PA | 789 | CG2034-RA | 1..719 | 17..735 | 3570 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:29:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2034-RB | 1284 | CG2034-RB | 247..971 | 17..740 | 3585 | 99.7 | Plus |
CG2034-RA | 1149 | CG2034-RA | 112..836 | 17..740 | 3585 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2257870..2258517 | 64..711 | 3225 | 99.8 | Plus |
3L | 28110227 | 3L | 2257754..2257807 | 17..70 | 255 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:29:11 has no hits.
BS15236.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:50 Download gff for
BS15236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-PA | 1..725 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:32 Download gff for
BS15236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-PA | 1..725 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:23:35 Download gff for
BS15236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 112..836 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:04 Download gff for
BS15236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 112..836 | 17..740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:04 Download gff for
BS15236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2257754..2257802 | 17..65 | 100 | -> | Plus |
3L | 2257872..2258517 | 66..711 | 99 | -> | Plus |
3L | 2258580..2258609 | 712..740 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:23:35 Download gff for
BS15236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2257754..2257802 | 17..65 | 100 | -> | Plus |
arm_3L | 2257872..2258517 | 66..711 | 99 | -> | Plus |
arm_3L | 2258580..2258609 | 712..740 | 96 | | Plus |
BS15236.complete Sequence
821 bp assembled on 2006-11-01
GenBank Submission: FJ637897
> BS15236.complete
GAAGTTATCAGTCGACATGCTCTCCAACCTGGTGGTGACCAAGCAGAAAG
TGGTCCTCGTAATAGATGAGCTAAATCGGGAGCGCATTGCCCCCAAGTTC
ATCGGCAGTCTGCTGCACGAGCAGGGACAGGGGGCGGATACCATCAAGGC
CCTGCCCACCGGCGTCAGCCTTAAGCACGTGGCCACCTTCGAGGCACTGA
TCGACAAGTACGCCAACAACAACACTGGGAGTACTACGGATTCCAACTCC
ACTGGCTTTAACGTCATCCTGCCAACATTGGCAGACCTGCTGTGCTACCA
GACGCCTGCTTTCATATTTGGCTTCCTCAACCGCCTACGCCGCTCGGACA
ATGTGCGTCGGGTGTTCCTTTGGGCCTCCCCGCAGCACCTGCAGGATCCG
CATGCCGACTACATCCTGGCTGGCTGCGAGTACCTGGCCGAGCTGGTCCT
CCGACTGGAATCGGACAAACTACTCTCGCTGATATCACGCAAGCCGGGCG
GAGGGGTGTCCAACAGGCGCTACTCCTGCGAAGTCAGCAAAACCCAGTTC
AAGGTGACGCCGCTGGACGGAGGACTGCCTGCAGGTGCCTCCCCCAAGCA
GCCCTCGCCCGAGGCGGAGCAGACCACAGAGCCGGCCAGCAGCACCTTCA
AAATCGAGCTTGACGAGGATGAAGTGTTGGCCCGCAATGCACTCACCCTG
CCATACGAACGCACATCCGAGCCGTCTGAGGGAAACATAATATACACGCC
CGATGCCGACGACGATTTCGACGAGGAGGATCCGGACGAGGATCTGTGCA
TCTAGAAGCTTTCTAGACCAT
BS15236.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2034-RB | 789 | CG2034-PB | 1..789 | 17..805 | 3930 | 99.9 | Plus |
CG2034-RA | 789 | CG2034-PA | 1..789 | 17..805 | 3930 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2034-RB | 1284 | CG2034-RB | 247..1035 | 17..805 | 3930 | 99.9 | Plus |
CG2034-RA | 1149 | CG2034-RA | 112..900 | 17..805 | 3930 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2257870..2258517 | 64..711 | 3225 | 99.8 | Plus |
3L | 28110227 | 3L | 2258579..2258673 | 711..805 | 475 | 100 | Plus |
3L | 28110227 | 3L | 2257754..2257807 | 17..70 | 255 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:47:14 has no hits.
BS15236.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:23 Download gff for
BS15236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 1..789 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:02 Download gff for
BS15236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 86..877 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:48 Download gff for
BS15236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 112..900 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:23 Download gff for
BS15236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 86..877 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:58 Download gff for
BS15236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 112..900 | 17..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:58 Download gff for
BS15236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2257754..2257802 | 17..65 | 100 | -> | Plus |
3L | 2257872..2258517 | 66..711 | 99 | -> | Plus |
3L | 2258580..2258673 | 712..805 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:48 Download gff for
BS15236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2257754..2257802 | 17..65 | 100 | -> | Plus |
arm_3L | 2257872..2258517 | 66..711 | 99 | -> | Plus |
arm_3L | 2258580..2258673 | 712..805 | 100 | | Plus |
BS15236.pep Sequence
Translation from 16 to 804
> BS15236.pep
MLSNLVVTKQKVVLVIDELNRERIAPKFIGSLLHEQGQGADTIKALPTGV
SLKHVATFEALIDKYANNNTGSTTDSNSTGFNVILPTLADLLCYQTPAFI
FGFLNRLRRSDNVRRVFLWASPQHLQDPHADYILAGCEYLAELVLRLESD
KLLSLISRKPGGGVSNRRYSCEVSKTQFKVTPLDGGLPAGASPKQPSPEA
EQTTEPASSTFKIELDEDEVLARNALTLPYERTSEPSEGNIIYTPDADDD
FDEEDPDEDLCI*
BS15236.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2034-PB | 262 | CG2034-PB | 1..262 | 1..262 | 1350 | 100 | Plus |
CG2034-PA | 262 | CG2034-PA | 1..262 | 1..262 | 1350 | 100 | Plus |