Clone Sequence Records
BS15238.3prime Sequence
874 bp (767 high quality bases) assembled on 2006-10-24
> BS15238.3prime
ATGGTCTAGAAAGCTTCTCCCTGCTAGTGGCAGAATCTCTGAGGGTCTGC
TTCATATTGGCCACCTGGTTGAGCTTGGCAAGGCGCTTCATGGTTCCGAG
CTCCTTAATAAACGTGGCCAGCGCCTCTTTTGTGGTCGAGATGTCAGCGT
CCTTTAAGTCATCCAACGTGTCCTCCTTTTCAAGTTCGTCCATTTCGGCT
TCTATGTCATTCAGCCGATCGAGAACCAAGGATTGCTGCACCTTGATATG
CTCGATCAAACGGTACTGGCACTCCTCCGGATCGATGGCAGCTTCCGGTT
GCGGAACGTTCGGAAGGTCGGGGGCCTCCAATTTTGCACGCTTAACCGGT
GTCAACGCAGTAGAGTCCAGATTGTCTTCGTCCCACTTTTTGGCCCATAG
ATAAAGCTTCGGATGACAGCGGTTGCGTGCGATGTTAATCTTCACCAGCA
GCGAGTGCATCGATCGCTTGGCATCTAGCAAATTGCCGGTCAGCGTGTGC
GAGCGCTTCAAGAGCTCGAATTGTTTGGTGGCCTGTGGATTTGCAGTGTG
ATACGCGGCCACCGGCAACTTGCCTTCGAATAGCCAGTCCTGGTCGTGCT
TAAATCTCATAGAATCCCGACCCCTCTGCGGATTGCGACAAATGTAGCAC
ACATACTTGTCCGGTACATCTGCCTCTTTGACAATTCCGTTGCATGCACC
GTGTTGCCAGCATAGGCACAATTCACATTGGATCATTAGGCCGTCCTCTT
CGCCATACTCGCAGATGCAGTTAATGATCTCCTCCTGCCGCATGCGCACA
ATTTCAATTAGTTCACCATTTTCCTTGATGTACTGTGGTGCTTTGCTTAA
CGTTTCAGCTGGTGGTGGGCAAGG
BS15238.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10042-PB | 3510 | MBD-R2-RB | 2658..3505 | 869..22 | 4165 | 99.6 | Minus |
| CG10042-PA | 3246 | MBD-R2-RA | 2394..3241 | 869..22 | 4165 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MBD-R2-RB | 3864 | CG10042-RB | 2774..3627 | 874..22 | 4200 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12352614..12353296 | 187..869 | 3385 | 99.7 | Plus |
| 3R | 32079331 | 3R | 12352380..12352545 | 22..187 | 815 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:21:32 has no hits.
BS15238.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:53 Download gff for
BS15238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10042-PA | 2388..3246 | 17..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:36 Download gff for
BS15238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10042-PA | 2388..3246 | 17..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:21:16 Download gff for
BS15238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MBD-R2-RB | 2811..3677 | 7..874 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:03 Download gff for
BS15238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MBD-R2-RB | 2774..3640 | 7..874 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:03 Download gff for
BS15238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12352367..12352544 | 7..186 | 96 | <- | Plus |
| 3R | 12352614..12353302 | 187..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:21:16 Download gff for
BS15238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8178089..8178266 | 7..186 | 96 | <- | Plus |
| arm_3R | 8178336..8179024 | 187..874 | 99 | | Plus |
BS15238.5prime Sequence
906 bp (780 high quality bases) assembled on 2006-10-24
> BS15238.5prime
GAAGTTATCAGTCGACATGGATACCGCGGAGATCGAAGCAGACCAACGGG
CACTTCAGCACGCCAGCGTGGAGGGAACGACTGAAACCCCGGGAAATGCT
CAGTCATCGACCAATGACGATGTGATCAAAGCTACGGTAGACCAAATAGT
TGCGCAAATCCTGTCGGAATCTGCAGAACGCAAGGCCACGGAGGAAGGTA
AAACAGGCAAGGCGGCGGATGACGTTAAAAATACTCCCGAAAGTGGAGAA
GATGCAAACAAGGCAGCTGCAAAGGAACCCTCAGGGACTCCGGTAGCCGC
AAGCAGCGAAGCCACAGTCCCAGCTCCTGGATCCGCTTCCAGTTCGAACT
CACCTTTGCCCGGCACACCGCCCAAGTACAGCAACCCACATAACCTGACT
ATTGGCGCCCGTTTGGAGGCGCTCAGTGTGGAAGGCAACTGGTTGCCCGC
CCGCATCGTGGAAGTTAACGAGACGGAGCAGACGCTACTCGTGCGCTTTG
AGCGCAATCACAAGCTAAAGGTGTCACCTTCGACCAGCGGCAGCTTTCAG
GAGTGGATGGCCATCAAGTCGGAGCGGCTGAGGCAGCGCCTCAGCAACCG
TGTGCTGCCCGTCTTTGAGCTGGACGAGAAGTGCATGGCCCGCTGGTCGG
GGCCGCGTAAGTTTCCAGGAACCATACGCAAGTTGCTGGGCAACGATACC
TACGAGGTTCTCTTCGACGATGGTTACGTTAAGAACGTGCGCGCCGTGCA
CATGAACAAGATGCCCAAGCAGTTGCCCCCTGTTCAGGTAGCGGAAGAGG
GTGCCTCAAAGTCACCCACTCCTGTTGGAACTCCAGTAAGCTCTGCACCT
GTGGCTTCGAAGCGGGCGAGCACAGGCAGCCTTGGCGGATCCAGTGGCTC
TTCGGG
BS15238.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10042-PB | 3510 | MBD-R2-RB | 265..1154 | 17..906 | 4425 | 99.8 | Plus |
| CG10042-PA | 3246 | MBD-R2-RA | 1..890 | 17..906 | 4425 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MBD-R2-RB | 3864 | CG10042-RB | 387..1276 | 17..906 | 4435 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12354990..12355879 | 906..17 | 4435 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:26:15 has no hits.
BS15238.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:55 Download gff for
BS15238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10042-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:38 Download gff for
BS15238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10042-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:40:01 Download gff for
BS15238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MBD-R2-RB | 424..1313 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:53 Download gff for
BS15238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MBD-R2-RB | 387..1276 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:53 Download gff for
BS15238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12354990..12355879 | 17..906 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:40:01 Download gff for
BS15238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8180712..8181601 | 17..906 | 99 | | Minus |
BS15238.complete Sequence
3278 bp assembled on 2008-08-14
GenBank Submission: KX800937
> BS15238.complete
GAAGTTATCAGTCGACATGGATACCGCGGAGATCGAAGCAGACCAACGGG
CACTTCAGCACGCCAGCGTGGAGGGAACGACTGAAACCCCGGGAAATGCT
CAGTCATCGACCAATGACGATGTGATCAAAGCTACGGTAGACCAAATAGT
TGCGCAAATCCTGTCGGAATCTGCAGAACGCAAGGCCACGGAGGAAGGTA
AAACAGGCAAGGCGGCGGATGACGTTAAAAATACTCCCGAAAGTGGAGAA
GATGCAAACAAGGCAGCTGCAAAGGAACCCTCAGGGACTCCGGTAGCCGC
AAGCAGCGAAGCCACAGTCCCAGCTCCTGGATCCGCTTCCAGTTCGAACT
CACCTTTGCCCGGCACACCGCCCAAGTACAGCAACCCACATAACCTGACT
ATTGGCGCCCGTTTGGAGGCGCTCAGTGTGGAAGGCAACTGGTTGCCCGC
CCGCATCGTGGAAGTTAACGAGACGGAGCAGACGCTACTCGTGCGCTTTG
AGCGCAATCACAAGCTAAAGGTGTCACCTTCGACCAGCGGCAGCTTTCAG
GAGTGGATGGCCATCAAGTCGGAGCGGCTGAGGCAGCGCCTCAGCAACCG
TGTGCTGCCCGTCTTTGAGCTGGACGAGAAGTGCATGGCCCGCTGGTCGG
GGCCGCGTAAGTTTCCAGGAACCATACGCAAGTTGCTGGGCAACGATACC
TACGAGGTTCTCTTCGACGATGGTTACGTTAAGAACGTGCGCGCCGTGCA
CATGAACAAGATGCCCAAGCAGTTGCCCCCTGTTCAGGTAGCGGAAGAGG
GTGCCTCAAAGTCACCCACTCCTGTTGGAACTCCAGTAAGCTCTGCACCT
GTGGCTCCGAAGCGGGCGAGCACAGGCAGCCTTGGCGGATCCAGTGGCTC
TTCGGGCAGCAAGAAGAGCAAATGTGCACCTCAGCGCAGGGATTGGCCGT
TGCTGGACATGGCCAGTTTGGATATAGCATCCCTTGGACTCCCAGAAATA
CCGCATGACGGCGAGTGGACTTGTCATTGGGTAAATGACCAGCCTATTGG
AACCGAGGGTTTCCTCATTGTGGGCGAGCACCAGAAACCCACTGTTATCG
TGCAGGATTGGCGTCTGCCTCCTGGCTGGATCAAGCACATGTACCAGCGG
TCCAACGTCCTCGGCAAGTGGGATGTTATTCTGGTCTCGCCCAGCGGCAA
ACGTTTCCGCTCCAAGTCCGACTTGAAGTTGTTCCTTGAGTCCCAGAATC
TGGTCTACAACCCGGATGTGTACGACTTTAGCATCCATCGACGTCGTGCC
AAAGACATCAATGCTTACGTCTACACACACGGCTACAATCCGCAGCCACC
GCCCAAGCCCAGGCCCATGGATGTGTCGATGAACTCCACGCTGGACCAGA
GCATCACGTCGCAACATTCTTTACCTTCTACTCCGATGCCGGTGAAAGAA
AGCCAGTACATGGAAGCACCGGTGGCCTCGCTTATGCCACCAGCTGAGTT
AATGTCGCCGCAGACGCAGCCTGCCGATGAGACAAAGCCCAAGATAGAAG
CAGAAATACTGGAAGCCAGTGAGGGAGGTACCTCTCAGCTTATGTTAGCA
GATCCTCATGTGGTGGAAAATGGCTTTGCTTTCATTGGGGGCCTAAAAGT
CAAAATCCAAGACAATCTTTATGTATGCCCGCGCGAAGATTGCGCCAAGA
CCTATCGCAAAGAAGACTTTCTGCTAATCCACATTCGCCATTATCACAAG
GAGTTTGCAGAACACGTCAGCCACTGTCCAAAGATGCAGGAACTAGCGGT
CAAACGTACGCACCCCTCATCCATCGATCAAGTTGAGGCGGTGCCAAAAA
ACCAAATACCCAACCAGCAATTCTTTGCCAAAATGCACCAGCAGGATTTG
CAGCAGTCACGATCGTTTAAACGACAGAGTGTATCAGCTACGGCCACATC
TTCAACGCCATCTGACATAACGCCTACTAAGGCCCTGTTATCTCCTAAGA
TGGAGCCACCAAGTGTGTCGCCAACTGTTGAAAGTGGCATTAAACAAGAA
GATGTTTCTTTGGATGCTGGTCCAACTCAGTCGTTTAATCCTTCATTGAG
TCGTTCCTGCAAGCGTGCACGCTTGTCGCCGTCGAAGCGGCCATCTGGCT
CGCGAAAGAGTAACCGCCAGCGCTCTCAGCGTCGTCCCATTTTGTCAGAT
AACCCGGCTGGTCATGGCTTAACCGAACAAGATGTTGAGGAGACACGGCA
ATCTTTTAACACCCCCACTCCGGATACGCGCATCGACTCGAAAAAACGCC
GCAGTGGTGCGGCAACAACTCCCATCAGTTCCATTGACTCACCAGCCATG
GGAGATTCGGTGTCCACGCCATCATCTAATGACCAGACCGACATAAATGC
AGCCCTTGCCCCACCACCAGCTGAAACGTTAAGCAAAGCACCACAGTACA
TCAAGGAAAATGGTGAACTAATTCGAATTGTGCGCATGCGGCAGGAGGAG
ATCATTAACTGCATCTGCGAGTATGGCGAAGAGGACGGCCTAATGATCCA
ATGTGAATTGTGCCTATGCTGGCAACACGGTGCATGCAACGGAATTGTCA
AAGAGGCAGATGTACCGGACAAGTATGTGTGCTACATTTGTCGCAATCCG
CAGAGGGGTCGGGATTCTATGAGATTTAAGCACGACCAGGACTGGCTATT
CGAAGGCAAGTTGCCGGTGGCCGCGTATCACACTGCAAATCCACAGGCCA
CCAAACAATTCGAGCTCTTGAAGCGCTCGCACACGCTGACCGGCAATTTG
CTAGATGCCAAGCGATCGATGCACTCGCTGCTGGTGAAGATTAACATCGC
ACGCAACCGCTGTCATCCGAAGCTTTATCTATGGGCCAAAAAGTGGGACG
AAGACAATCTGGACTCTACTGCGTTGACACCGGTTAAGCGTGCAAAATTG
GAGGCCCCCGACCTTCCGAACGTTCCGCAACCGGAAGCTGCCATCGATCC
GGAGGAGTGCCAGTACCGTTTGATCGAGCATATCAAGGTGCAGCAATCCT
TGGTTCTCGATCGGCTGAATGACATAGAAGCCGAAATGGACGAACTTGAA
AAGGAGGACACGTTGGATGACTTAAAGGACGCTGACATCTCGACCACAAA
AGAGGCGCTGGCCACGTTTATTAAGGAGCTCGAAACCATGAAGCGCCTTG
CCAAGCTCAACCAGGTGGCCAATATGAAGCAGACCCTCAGAGATTCTGCC
ACTAGCAAGTAGAAGCTTTCTAGACCAT
BS15238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MBD-R2-RB | 3510 | CG10042-PB | 265..3510 | 17..3262 | 16185 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MBD-R2-RB | 3864 | CG10042-RB | 387..3632 | 17..3262 | 16185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12352614..12353944 | 3092..1762 | 6640 | 99.9 | Minus |
| 3R | 32079331 | 3R | 12354919..12355879 | 977..17 | 4805 | 100 | Minus |
| 3R | 32079331 | 3R | 12354195..12354847 | 1628..976 | 3235 | 99.7 | Minus |
| 3R | 32079331 | 3R | 12352375..12352545 | 3262..3092 | 855 | 100 | Minus |
| 3R | 32079331 | 3R | 12353998..12354131 | 1761..1628 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:49:28 has no hits.
BS15238.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:21 Download gff for
BS15238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MBD-R2-RA | 221..3474 | 17..3272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:39 Download gff for
BS15238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MBD-R2-RB | 424..3669 | 17..3262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:36 Download gff for
BS15238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MBD-R2-RA | 221..3466 | 17..3262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:17 Download gff for
BS15238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MBD-R2-RB | 387..3632 | 17..3262 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:17 Download gff for
BS15238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12352614..12353944 | 1762..3092 | 99 | <- | Minus |
| 3R | 12353998..12354130 | 1629..1761 | 100 | <- | Minus |
| 3R | 12354195..12354845 | 978..1628 | 99 | <- | Minus |
| 3R | 12354919..12355879 | 17..977 | 100 | | Minus |
| 3R | 12352375..12352544 | 3093..3262 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:39 Download gff for
BS15238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8178097..8178266 | 3093..3262 | 100 | <- | Minus |
| arm_3R | 8178336..8179666 | 1762..3092 | 99 | <- | Minus |
| arm_3R | 8179720..8179852 | 1629..1761 | 100 | <- | Minus |
| arm_3R | 8179917..8180567 | 978..1628 | 99 | <- | Minus |
| arm_3R | 8180641..8181601 | 17..977 | 100 | | Minus |
BS15238.pep Sequence
Translation from 16 to 3261
> BS15238.pep
MDTAEIEADQRALQHASVEGTTETPGNAQSSTNDDVIKATVDQIVAQILS
ESAERKATEEGKTGKAADDVKNTPESGEDANKAAAKEPSGTPVAASSEAT
VPAPGSASSSNSPLPGTPPKYSNPHNLTIGARLEALSVEGNWLPARIVEV
NETEQTLLVRFERNHKLKVSPSTSGSFQEWMAIKSERLRQRLSNRVLPVF
ELDEKCMARWSGPRKFPGTIRKLLGNDTYEVLFDDGYVKNVRAVHMNKMP
KQLPPVQVAEEGASKSPTPVGTPVSSAPVAPKRASTGSLGGSSGSSGSKK
SKCAPQRRDWPLLDMASLDIASLGLPEIPHDGEWTCHWVNDQPIGTEGFL
IVGEHQKPTVIVQDWRLPPGWIKHMYQRSNVLGKWDVILVSPSGKRFRSK
SDLKLFLESQNLVYNPDVYDFSIHRRRAKDINAYVYTHGYNPQPPPKPRP
MDVSMNSTLDQSITSQHSLPSTPMPVKESQYMEAPVASLMPPAELMSPQT
QPADETKPKIEAEILEASEGGTSQLMLADPHVVENGFAFIGGLKVKIQDN
LYVCPREDCAKTYRKEDFLLIHIRHYHKEFAEHVSHCPKMQELAVKRTHP
SSIDQVEAVPKNQIPNQQFFAKMHQQDLQQSRSFKRQSVSATATSSTPSD
ITPTKALLSPKMEPPSVSPTVESGIKQEDVSLDAGPTQSFNPSLSRSCKR
ARLSPSKRPSGSRKSNRQRSQRRPILSDNPAGHGLTEQDVEETRQSFNTP
TPDTRIDSKKRRSGAATTPISSIDSPAMGDSVSTPSSNDQTDINAALAPP
PAETLSKAPQYIKENGELIRIVRMRQEEIINCICEYGEEDGLMIQCELCL
CWQHGACNGIVKEADVPDKYVCYICRNPQRGRDSMRFKHDQDWLFEGKLP
VAAYHTANPQATKQFELLKRSHTLTGNLLDAKRSMHSLLVKINIARNRCH
PKLYLWAKKWDEDNLDSTALTPVKRAKLEAPDLPNVPQPEAAIDPEECQY
RLIEHIKVQQSLVLDRLNDIEAEMDELEKEDTLDDLKDADISTTKEALAT
FIKELETMKRLAKLNQVANMKQTLRDSATSK*
BS15238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MBD-R2-PB | 1169 | CG10042-PB | 89..1169 | 1..1081 | 5646 | 100 | Plus |
