Clone Sequence Records
BS15239.complete Sequence
1757 bp assembled on 2009-12-07
GenBank Submission: KX803109
> BS15239.complete
GAAGTTATCAGTCGACATGAATCTGATAAGCGGCATTAAGTTGTACATCG
AGAAAATGTGCTCCGAGTCGGGACCGGGCATGAAAATCATTCTGCTGGAC
AAGGAGACGACCAGTATAATTTCGATGGCCTTTAGCCAATCGGACATGCT
GCAACGGGAGGTGTACCTATTTGAGCGCCTGGACTCGGGAAGATCCAACG
AGCGGTTAAAGTATCTAAAATGCATCGTCTTTATACGCCCCACCAAGCAG
AACATCCAGCTACTGGCCAACGAGTTGCGGAACCCCAAATACAGCGCCTA
CTACATTTATTTCAGCAACATCATTCCCCGGACGGACATTAAATACTTGG
CAGAGTGCGACGAATCCGAATCGGTGCGAGAAGTGAAGGAACTGTATGCA
GACTACCTGTGCGTCAACCCCAATCTGTTCTCATTAGGCATTCCCAATTG
CATGGCGAATCTTAATTGGCTGCCGGACGCTCTCAACCGCAGCATGCAGG
GCATCACAGCCGTGCTGTTGTCCCTTAAGCTGAACCCAGTGATCCGGTAC
CGAGCCGGTTCTCAGGCAGCGCAGCTTCTGGCCAAGCTCATATACGAGCA
AATCACAAAAGAGTCCTCGCTATTCGACTTTCGCTCCAACATGGATGGCG
CTGCGCCACCGCTGCTGCTTGTGCTGGACCGCAGGGACGATCCTGTGACG
CCGCTTTTGCATCAGTGGACATACCAGGCCATGGTGCATGAGTTGCTGCA
CATAAAAAACAATCGATTGGACCTGTCCAATTGCCCCAATGTGCCGAAAG
ACTTCAAGGAGCTGGTCTTATCCGGTGATCAGGATGACTTCTATGGCAAC
AACATGTACGCCAACTACGGCGAAATCGGATCTACCATCAAACAACTGAT
GGAGGAGTTCCAGCGCAAGGCGAACGACCACAAGAAAGTGGAGAGCATAG
CAGACATGAAGAACTTTATTGAGTCATATCCGCAGTTTAAAAAAATGTCT
GGCACTGTGCAAAAGCATTTGTGTGTGATTGGAGAACTGTCGGCGCTGAG
CAACAAGAGGAATCTCTTCGAGGTTTCCGAACTTGAACAGGAGATCGCTT
GCAAGGCGGAGCACTCGGCCCAGCTGCAGAGAATCAAAAAACTAATTGCC
GACGAACGGGTTTCCATCGATGATGCTCTTAAGTTGGTGGCACTTTATGC
ATTGCGATACGAGCGACACGCCAACTGCGACACATCTGGACTGCTGCAAA
TAATCAAAACGCGCGGTGGACGAGCGGCTATAGTGCCATCGTTGATTGAG
TATGCTGGAACCCATGTACGACAAGGAGATCTCTTCAATATGGTGCGGAT
AACGGACGCCGTAAAGCTGACACGGAATTTGATTAAGGGCCTTAAGGGTG
TGGAAAATGTCTTCACACAGCACACTCCTCTCCTGAAGGAAACTTTGGAG
GACGTGTTTAAGGGCCGCGAGCTGGATCCCCTCTTCCCGGCCATCAATTC
AGAGCTTGTGCCATTTCGACGACCACCGCAGGAGGTTGTCGTGTTCATTA
TTGGCGGTGCCACGTACGAGGAAGCCTTAGCGGTGCACCAGTTAAACAAC
GCCGGCTATAAAGTCATTCTTGGCGGCACCACCATCCATAACTCGCAGAG
TTTTATCCAAGAGGTCGTGGCCGCCACTAGTGGCATTCAGTTTAAGCACA
CCAAATCCATGATCAAGTACTGTTCCACGGATAACATTTAAAAGCTTTCT
AGACCAT
BS15239.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps45-RA | 1725 | CG8228-PA | 1..1725 | 17..1741 | 8625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps45-RA | 2055 | CG8228-RA | 102..1828 | 16..1742 | 8635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9564432..9565865 | 309..1742 | 7170 | 100 | Plus |
| 3R | 32079331 | 3R | 9564181..9564380 | 109..308 | 1000 | 100 | Plus |
| 3R | 32079331 | 3R | 9564025..9564118 | 16..109 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:00:00 has no hits.
BS15239.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:11 Download gff for
BS15239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8228-RA | 46..1768 | 17..1739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:17 Download gff for
BS15239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps45-RA | 103..1825 | 17..1739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:24 Download gff for
BS15239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8228-RA | 46..1768 | 17..1739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:36 Download gff for
BS15239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps45-RA | 103..1825 | 17..1739 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:36 Download gff for
BS15239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9564026..9564118 | 17..109 | 100 | -> | Plus |
| 3R | 9564182..9564380 | 110..308 | 100 | -> | Plus |
| 3R | 9564432..9565862 | 309..1739 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:17 Download gff for
BS15239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5389748..5389840 | 17..109 | 100 | -> | Plus |
| arm_3R | 5389904..5390102 | 110..308 | 100 | -> | Plus |
| arm_3R | 5390154..5391584 | 309..1739 | 100 | | Plus |
BS15239.3prime Sequence
484 bp (477 high quality bases) assembled on 2006-10-24
> BS15239.3prime
CATTTAGGGGGCGNGNNAAANGAATGGTNTANAAAGATTTTCCTTTGAGA
GGTGGAANAGTANTTGATNATGGATTTGGTGTGNTTAAATTGAATGGNAN
TAGTGGAGTGAAAGACCTCTGGGATAAAANTTTGAGAGTTATGGATGGTG
GTAGAGNAAAGAATGAATTTATAGANGGNGTTGTTTAANTGGTGANAAGA
TAAGGGTTANTNGTAAGTGGATAAGNAAATAATGAAAANGAAAAGTTGGT
GGGGTGGTGGTNGAAATGGTANAAGTTTTGAATTGATGGGGGGGAAGAGG
GGATNNAGTTNGAGGNTTTTAAANATGTTTTTNAAAGTTTAATTTAGGAG
AGGAGTGTGATGTGTGAAGAAATTTTAGAGANANTTAAGGGAATTAATGA
AATTNNGTGTTAGATTTANGGAGATAGTTATATGNAAAATATTGAAGAGA
TATNNTTGTNGTANATGGGTTNTAGNATAATNAA
BS15239.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 19:16:48 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps45-RA | 2055 | CG8228-RA | 1395..1814 | 471..52 | 631 | 74.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:54:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9565432..9565851 | 471..52 | 631 | 74.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:54:08 has no hits.
BS15239.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-09-01 18:54:09 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 07:55:56 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-13 07:55:56 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-09-01 18:54:09 has no hits.
BS15239.5prime Sequence
764 bp (712 high quality bases) assembled on 2006-10-24
> BS15239.5prime
GAAGTTATCAGTCGACATGAATCTGATAAGCGGCATTAAGTTGTACATCG
AGAAAATGTGCTCCGAGTCGGGACCGGGCATGAAAATCATTCTGCTGGAC
AAGGAGACGACCAGTATAATTTCGATGGCCTTTAGCCAATCGGACATGCT
GCAACGGGAGGTGTACCTATTTGAGCGCCTGGACTCGGGAAGATCCAACG
AGCGGTTAAAGTATCTAAAATGCATCGTCTTTATACGCCCCACCAAGCAG
AACATCCAGCTACTGGCCAACGAGTTGCGGAACCCCAAATACAGCGCCTA
CTACATTTATTTCAGCAACATCATTCCCCGGACGGACATTAAATACTTGG
CAGAGTGCGACGAATCCGAATCGGTGCGAGAAGTGAAGGAACTGTATGCA
GACTACCTGTGCGTCAACCCCAATCTGTTCTCATTAGGCATTCCCAATTG
CATGGCGAATCTTAATTGGCTGCCGGACGCTCTCAACCGCAGCATGCAGG
GCATCACAGCCGTGCTGTTGTCCCTTAAGCTGAACCCAGTGATCCGGTAC
CGAGCCGGTTCTCAGGCAGCGCAGCTTCTGGCCAAGCTCATATACGAGCA
AATCACAAAAAGAGTCCTCGCTATTCGACTTTCGCTCCAACATGGATGGC
GCTGCGCCACCGCTGCTGCTTGTGCTGGACCGCAGGGACGATCCTGTGAC
GCCGCTTTTGCATCAGTGGACATACCAGGCCATGGTGCATGAGTTGCTGC
ACATAAAAAACAAT
BS15239.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8228-PA | 1725 | CG8228-RA | 1..594 | 17..610 | 2970 | 100 | Plus |
| CG8228-PA | 1725 | CG8228-RA | 591..747 | 608..764 | 785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps45-RA | 2055 | CG8228-RA | 102..849 | 16..764 | 3720 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:55:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9564432..9564886 | 309..764 | 2230 | 99.8 | Plus |
| 3R | 32079331 | 3R | 9564181..9564380 | 109..308 | 1000 | 100 | Plus |
| 3R | 32079331 | 3R | 9564025..9564118 | 16..109 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:55:16 has no hits.
BS15239.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:56 Download gff for
BS15239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8228-PA | 1..747 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:39 Download gff for
BS15239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8228-PA | 1..747 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:15 Download gff for
BS15239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps45-RA | 92..849 | 3..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:17 Download gff for
BS15239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps45-RA | 92..849 | 3..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:17 Download gff for
BS15239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9564015..9564118 | 3..109 | 96 | -> | Plus |
| 3R | 9564182..9564380 | 110..308 | 100 | -> | Plus |
| 3R | 9564432..9564886 | 309..764 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:15 Download gff for
BS15239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5389737..5389840 | 3..109 | 96 | -> | Plus |
| arm_3R | 5389904..5390102 | 110..308 | 100 | -> | Plus |
| arm_3R | 5390154..5390608 | 309..764 | 99 | | Plus |
BS15239.pep Sequence
Translation from 16 to 1740
> BS15239.pep
MNLISGIKLYIEKMCSESGPGMKIILLDKETTSIISMAFSQSDMLQREVY
LFERLDSGRSNERLKYLKCIVFIRPTKQNIQLLANELRNPKYSAYYIYFS
NIIPRTDIKYLAECDESESVREVKELYADYLCVNPNLFSLGIPNCMANLN
WLPDALNRSMQGITAVLLSLKLNPVIRYRAGSQAAQLLAKLIYEQITKES
SLFDFRSNMDGAAPPLLLVLDRRDDPVTPLLHQWTYQAMVHELLHIKNNR
LDLSNCPNVPKDFKELVLSGDQDDFYGNNMYANYGEIGSTIKQLMEEFQR
KANDHKKVESIADMKNFIESYPQFKKMSGTVQKHLCVIGELSALSNKRNL
FEVSELEQEIACKAEHSAQLQRIKKLIADERVSIDDALKLVALYALRYER
HANCDTSGLLQIIKTRGGRAAIVPSLIEYAGTHVRQGDLFNMVRITDAVK
LTRNLIKGLKGVENVFTQHTPLLKETLEDVFKGRELDPLFPAINSELVPF
RRPPQEVVVFIIGGATYEEALAVHQLNNAGYKVILGGTTIHNSQSFIQEV
VAATSGIQFKHTKSMIKYCSTDNI*
BS15239.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps45-PA | 574 | CG8228-PA | 1..574 | 1..574 | 2937 | 100 | Plus |
| Slh-PG | 639 | CG3539-PG | 30..633 | 20..558 | 280 | 22 | Plus |
| Slh-PC | 639 | CG3539-PC | 30..633 | 20..558 | 280 | 22 | Plus |
| Rop-PB | 597 | CG15811-PB | 36..590 | 19..550 | 256 | 20.6 | Plus |
| Rop-PA | 597 | CG15811-PA | 36..590 | 19..550 | 256 | 20.6 | Plus |
