Clone Sequence Records
BS15240.3prime Sequence
612 bp (612 high quality bases) assembled on 2006-10-24
> BS15240.3prime
ATGGTCTAGAAAGCTTTCCCTTTCGGGGGCGCTCCACAGTTCGCCCCCGA
TCGAGTAGCTCCCGGAAGGTTTTGACCTCGTGTCGGGGTATGCTCTCCGG
GTACTTGGGCTGCATCAGCCCGTAGATGAAGTCAAGCTCCGTCTCCTCGT
CGTGTCGTCCCTCCGGCAACTTGGCTAGGAGCGCTCGCTGCTTGCAGATG
AATGAGTCGATCACCTCGTCGTAGGACTGCTTCGTCTCGAAGATCTCCAT
GTATATCTGGTAGGAAGGTTTAGTGGGCGAGAAGTGATCGCGCAGCAGCT
GCAGGGCATCCGACCAGGTCTTGGCATCCCGGCGCACACCCTTCCACCAC
ACCACGGCAATGCTCTTGAAGAGCAGCGGCAAACCCTTTAGCGCATCTTT
GTCGCTGATGCCCTCCACCTCTTTATACGTCTCCACGGCATTGATGAACT
CGTCCACGGCATCGTGATCCCGCTGGCCACTGAATCTCACCGTGCAGTTG
CTAAAGCTACCCTTGGATGGCGGTTCCTCTTTGATTGGCCCCAGCGATTT
AATGGTTTCTATGAATATGCGAAACTGTTCGTCGGACATCTGCGTCATGT
CGACTGATAACT
BS15240.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13941-PA | 582 | CG13941-RA | 1..570 | 598..29 | 2750 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arc2-RA | 902 | CG13941-RA | 117..686 | 598..29 | 2790 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14362040..14362609 | 598..29 | 2790 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:31:23 has no hits.
BS15240.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:57 Download gff for
BS15240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13941-PA | 1..570 | 29..598 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:40 Download gff for
BS15240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13941-PA | 1..570 | 29..598 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:54 Download gff for
BS15240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 110..686 | 29..606 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:29:14 Download gff for
BS15240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 110..686 | 29..606 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:29:14 Download gff for
BS15240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14362033..14362614 | 28..606 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:54 Download gff for
BS15240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10249538..10250119 | 28..606 | 97 | -> | Minus |
BS15240.5prime Sequence
612 bp (612 high quality bases) assembled on 2006-10-24
> BS15240.5prime
GAAGTTATCAGTCGACATGACGCAGATGTCCGACGAACAGTTTCGCATAT
TCATAGAAACCATTAAATCGCTGGGGCCAATCAAAGAGGAACCGCCATCC
AAGGGTAGCTTTAGCAACTGCACGGTGAGATTCAGTGGCCAGCGGGATCA
CGATGCCGTGGACGAGTTCATCAATGCCGTGGAGACGTATAAAGAGGTGG
AGGGCATCAGCGACAAAGATGCGCTAAAGGGTTTGCCGCTGCTCTTCAAG
AGCATTGCCGTGGTGTGGTGGAAGGGTGTGCGCCGGGATGCCAAGACCTG
GTCGGATGCCCTGCAGCTGCTGCGCGATCACTTCTCGCCCACTAAACCTT
CCTACCAGATATACATGGAGATCTTCGAGACGAAGCAGTCCTACGACGAG
GTGATCGACTCATTCATCTGCAAGCAGCGAGCGCTCCTAGCCAAGTTGCC
GGAGGGACGACACGACGAGGAGACGGAGCTTGACTTCATCTACGGGCTGA
TGCAGCCCAAGTACCGGGAGAGCATACCCCGACACGAGGTCAAAACCTTC
CGGGAGCTACTCGATCGGGGGCGAACTGTGGAGCGCACAAGGCACTGAAA
GCTTTCTAGACC
BS15240.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13941-PA | 582 | CG13941-RA | 1..582 | 17..598 | 2835 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arc2-RA | 902 | CG13941-RA | 117..699 | 17..599 | 2870 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14362040..14362622 | 17..599 | 2870 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:26:51 has no hits.
BS15240.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:58 Download gff for
BS15240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13941-PA | 1..582 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:42 Download gff for
BS15240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13941-PA | 1..582 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:40:08 Download gff for
BS15240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 110..702 | 9..604 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:57 Download gff for
BS15240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 110..702 | 9..604 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:57 Download gff for
BS15240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14362033..14362625 | 9..604 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:40:08 Download gff for
BS15240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10249538..10250130 | 9..604 | 98 | | Plus |
BS15240.complete Sequence
614 bp assembled on 2006-11-01
GenBank Submission: FJ637898
> BS15240.complete
GAAGTTATCAGTCGACATGACGCAGATGTCCGACGAACAGTTTCGCATAT
TCATAGAAACCATTAAATCGCTGGGGCCAATCAAAGAGGAACCGCCATCC
AAGGGTAGCTTTAGCAACTGCACGGTGAGATTCAGTGGCCAGCGGGATCA
CGATGCCGTGGACGAGTTCATCAATGCCGTGGAGACGTATAAAGAGGTGG
AGGGCATCAGCGACAAAGATGCGCTAAAGGGTTTGCCGCTGCTCTTCAAG
AGCATTGCCGTGGTGTGGTGGAAGGGTGTGCGCCGGGATGCCAAGACCTG
GTCGGATGCCCTGCAGCTGCTGCGCGATCACTTCTCGCCCACTAAACCTT
CCTACCAGATATACATGGAGATCTTCGAGACGAAGCAGTCCTACGACGAG
GTGATCGACTCATTCATCTGCAAGCAGCGAGCGCTCCTAGCCAAGTTGCC
GGAGGGACGACACGACGAGGAGACGGAGCTTGACTTCATCTACGGGCTGA
TGCAGCCCAAGTACCGGGAGAGCATACCCCGACACGAGGTCAAAACCTTC
CGGGAGCTACTCGATCGGGGGCGAACTGTGGAGCGCACAAGGCACTGAAA
GCTTTCTAGACCAT
BS15240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arc2-RA | 582 | CG13941-PA | 1..582 | 17..598 | 2865 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arc2-RA | 902 | CG13941-RA | 117..699 | 17..599 | 2870 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14362040..14362622 | 17..599 | 2870 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:35:49 has no hits.
BS15240.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:24 Download gff for
BS15240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 1..582 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:03 Download gff for
BS15240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 90..682 | 9..604 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:44 Download gff for
BS15240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 117..697 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:24 Download gff for
BS15240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 90..682 | 9..604 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:36 Download gff for
BS15240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 117..697 | 17..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:36 Download gff for
BS15240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14362040..14362620 | 17..597 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:44 Download gff for
BS15240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10249545..10250125 | 17..597 | 99 | | Plus |
BS15240.pep Sequence
Translation from 16 to 597
> BS15240.pep
MTQMSDEQFRIFIETIKSLGPIKEEPPSKGSFSNCTVRFSGQRDHDAVDE
FINAVETYKEVEGISDKDALKGLPLLFKSIAVVWWKGVRRDAKTWSDALQ
LLRDHFSPTKPSYQIYMEIFETKQSYDEVIDSFICKQRALLAKLPEGRHD
EETELDFIYGLMQPKYRESIPRHEVKTFRELLDRGRTVERTRH*
BS15240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arc2-PA | 193 | CG13941-PA | 1..193 | 1..193 | 1012 | 100 | Plus |
| Arc1-PA | 254 | CG12505-PA | 4..202 | 1..189 | 568 | 53.3 | Plus |
