Clone BS15241 Report

Search the DGRC for BS15241

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptSpn55B-RA
Protein status:BS15241.pep: full length peptide match
Sequenced Size:1157

Clone Sequence Records

BS15241.3prime Sequence

842 bp (718 high quality bases) assembled on 2006-10-24

> BS15241.3prime
TCTCTAGGGGGGCGCGNNAAANGAATGGTNTAGAAAGNTTTTACGTTGGG
GGGAGGAAGGNGNAAGAGAAGAGGATGTTCTTCTTATTCCAGATGACGTA
GAGGAAGGGCCGGTCCGCCTGGAACTGCAGCGGGAAGGTCATCATGCGGG
TCATCATGATCATGCCGGTGGCAGCCGCCGCCTCCGTGCCCTCCTCATTC
ACCTCGATGGTGGCCTTGTGCAGCACCTTGGACACAAAGACGCCCTCGGG
GGATTCCAGCAGATTGCTAAACTCAGCTTGGTCCGTAAACATTTTCGTGA
TGCCCAGCTGCTTCAGTTTCTCGGCCAATTCCAGGGAGTAGTCCACCTTA
AACTTGGGGAACTTGACATGGACCTCTTCCACGGTCAACTTGTCGGCCAA
ATCCACCAGGTTCACAGTCTTGAGCTTCTCGGCTAGGGCGTAAATACCTG
TCCGCTCCTGCGGCAGCAGCACGAACATGGAGAGGTCAGAGTCCTGGTAG
GGCATCTCCAGGGCAGTGCAGCCCAGATCTTCGAAGAAGCCATAGTTGAA
CTTGGCCTTCTGGTTCATGTAGTTGATTTTAACTTGCTCCTCCTCGCCCA
CCCAGAAGATATCCTCCTCGGTGCGCTCCTCGCTGAACTTGTGCGCCCAG
CTGCCCTTGAAGTGGAGGGCATTGAACAGGACCAGCCTGGTGTTGTCCGA
GAACGAGTCCGCGCTGACCAGCTCCGTAATCTTGCCCTGAGTCTTGGCAT
TCACCCAGGCATTGATGGCCTGGGCGGCGGCTTCGTTGAGCGCAAAGTTA
ATGGACTCCGCCTCCGAATGATACTGCTCCTTGAGGGCCGAA

BS15241.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10913-PA 1125 Spn6-RA 325..1098 841..68 3770 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Spn55B-RA 1297 CG10913-RA 418..1191 841..68 3810 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18126764..18127297 841..308 2610 99.3 Minus
2R 25286936 2R 18127862..18128104 310..68 1215 100 Minus
Blast to na_te.dros performed on 2015-02-04 21:20:53 has no hits.

BS15241.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:59 Download gff for BS15241.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn6-PA 326..1110 56..840 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:43 Download gff for BS15241.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10913-PA 326..1110 56..840 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:42:15 Download gff for BS15241.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn55B-RA 417..1203 56..842 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:49 Download gff for BS15241.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn55B-RA 417..1203 56..842 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:49 Download gff for BS15241.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18126763..18127297 308..842 99 -> Minus
2R 18127865..18128116 56..307 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:42:15 Download gff for BS15241.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14014268..14014802 308..842 99 -> Minus
arm_2R 14015370..14015621 56..307 98   Minus

BS15241.5prime Sequence

823 bp (739 high quality bases) assembled on 2006-10-24

> BS15241.5prime
GAAGTTATCAGTCGACATGTTCGATTTCAATTTGGAATTTGCGCGTGGAG
GTGCCCGTTTCACCAGCGAACTTTTTCAGCTTTTGAGCGCTGGCGGGCTC
AAGGAGAACGTCGTCTTCTCGCCCTTCTCCATCCAAACTTGCATTGCCCT
GGCCTTTGCCGGATCGCAGGGTGAAACCGCCGACGAGATCGCCAAGGCAC
TGCACTTCGTCTCCAACTTTCCGCCGGAGGTGGCCCAAACGTTCCAGTTT
GTGCTGGAGAAGTACCGCAACAGTAACCTGCTGCGCGTTGCCAACAAGCT
GTACGTGCAGGAGGGCAAGCAGCTGAAGCCCGCCTACCAGTCGGCCATCA
AGGAGCAGTATCATTCGGAGGCGGAGTCCATTAACTTTGCGCTCAACGAT
GCCGCCGCCCAGGCCATCAATGCCTGGGTGAATGCCAAGACTCAGGGCAA
GATTACGGAGCTGGTCAGCGCGGACTCGTTCTCGGACAACACCAGGCTGG
TCCTGCTCAATGCCCTCCACTTCAAGGGCAGCTGGGCGCACAAGTTCAGC
GAGGAGCGCACCGAGGAGGATATCTTCTGGGTGGGCGAGGAGGAGCAAGT
TAAAATCAACTACATGAACCAGAAGGCCAAGTTCAACTATGGCTTCTTCG
AAGATCTGGGCTGCACTGCCCTGGAGATGCCCTACCAGGACTCTGACCTC
TCCATGTTCGTGCTGCTGCCGCAGGAGCGGACAGGTATTTACGCCCCTAG
CCGAGAAGCTCAAGACTGTGAACCTGGTGGATTTGGCCGACAAGTTGACC
GTGAAAGAGGTCCATGTCAAGTT

BS15241.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10913-PA 1125 Spn6-RA 1..730 17..746 3625 99.8 Plus
CG10913-PA 1125 Spn6-RA 728..806 745..823 370 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
Spn55B-RA 1297 CG10913-RA 94..899 17..823 3980 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18126440..18127245 17..823 3955 99.6 Plus
Blast to na_te.dros performed on 2015-02-11 03:29:56 has no hits.

BS15241.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:00 Download gff for BS15241.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn6-PA 1..806 17..823 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:45 Download gff for BS15241.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10913-PA 1..806 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:38 Download gff for BS15241.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn55B-RA 78..899 3..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:08:05 Download gff for BS15241.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn55B-RA 78..899 3..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:08:05 Download gff for BS15241.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18126424..18127245 3..823 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:38 Download gff for BS15241.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14013929..14014750 3..823 99   Plus

BS15241.complete Sequence

1157 bp assembled on 2009-12-07

GenBank Submission: KX800856

> BS15241.complete
GAAGTTATCAGTCGACATGTTCGATTTCAATTTGGAATTTGCGCGTGGAG
GTGCCCGTTTCACCAGCGAACTTTTTCAGCTTTTGAGCGCTGGCGGGCTC
AAGGAGAACGTCGTCTTCTCGCCCTTCTCCATCCAAACTTGCATTGCCCT
GGCCTTTGCCGGATCGCAGGGTGAAACCGCCGACGAGATCGCCAAGGCAC
TGCACTTCGTCTCCAACTTTCCGCCGGAGGTGGCCCAAACGTTCCAGTTT
GTGCTGGAGAAGTACCGCAACAGTAACCTGCTGCGCGTTGCCAACAAGCT
GTACGTGCAGGAGGGCAAGCAGCTGAAGCCCGCCTACCAGTCGGCCATCA
AGGAGCAGTATCATTCGGAGGCGGAGTCCATTAACTTTGCGCTCAACGAT
GCCGCCGCCCAGGCCATCAATGCCTGGGTGAATGCCAAGACTCAGGGCAA
GATTACGGAGCTGGTCAGCGCGGACTCGTTCTCGGACAACACCAGGCTGG
TCCTGCTCAATGCCCTCCACTTCAAGGGCAGCTGGGCGCACAAGTTCAGC
GAGGAGCGCACCGAGGAGGATATCTTCTGGGTGGGCGAGGAGGAGCAAGT
TAAAATCAACTACATGAACCAGAAGGCCAAGTTCAACTATGGCTTCTTCG
AAGATCTGGGCTGCACTGCCCTGGAGATGCCCTACCAGGACTCTGACCTC
TCCATGTTCGTGCTGCTGCCGCAGGAGCGGACAGGTATTTACGCCCTAGC
CGAGAAGCTCAAGACTGTGAACCTGGTGGATTTGGCCGACAAGTTGACCG
TGGAAGAGGTCCATGTCAAGTTCCCCAAGTTTAAGGTGGACTACTCCCTG
GAATTGGCCGAGAAACTGAAGCAGCTGGGCATCACGAAAATGTTTACGGA
CCAAGCTGAGTTTAGCAATCTGCTGGAATCCCCCGAGGGCGTCTTTGTGT
CCAAGGTGCTGCACAAGGCCACCATCGAGGTGAATGAGGAGGGCACGGAG
GCGGCGGCTGCCACCGGCATGATCATGATGACCCGCATGATGACCTTCCC
GCTGCAGTTCCAGGCGGACCGGCCCTTCCTCTACGTCATCTGGAATAAGA
AGAACATCCTCTTCGCTGGCGCCTTCGTTAAGGCTGCCTAAAAGCTTTCT
AGACCAT

BS15241.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
Spn55B-RA 1125 CG10913-PA 1..1125 17..1141 5610 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
Spn55B-RA 1297 CG10913-RA 94..1222 17..1145 5630 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18126440..18127297 17..874 4275 99.9 Plus
2R 25286936 2R 18127862..18128135 872..1145 1370 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:29:58 has no hits.

BS15241.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:46 Download gff for BS15241.complete
Subject Subject Range Query Range Percent Splice Strand
Spn6-RA 141..1258 22..1139 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:37 Download gff for BS15241.complete
Subject Subject Range Query Range Percent Splice Strand
Spn55B-RA 99..1216 22..1139 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:00 Download gff for BS15241.complete
Subject Subject Range Query Range Percent Splice Strand
Spn6-RA 141..1258 22..1139 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:43 Download gff for BS15241.complete
Subject Subject Range Query Range Percent Splice Strand
Spn55B-RA 99..1216 22..1139 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:43 Download gff for BS15241.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18126445..18127297 22..874 99 -> Plus
2R 18127865..18128129 875..1139 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:37 Download gff for BS15241.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14013950..14014802 22..874 99 -> Plus
arm_2R 14015370..14015634 875..1139 100   Plus

BS15241.pep Sequence

Translation from 16 to 1140

> BS15241.pep
MFDFNLEFARGGARFTSELFQLLSAGGLKENVVFSPFSIQTCIALAFAGS
QGETADEIAKALHFVSNFPPEVAQTFQFVLEKYRNSNLLRVANKLYVQEG
KQLKPAYQSAIKEQYHSEAESINFALNDAAAQAINAWVNAKTQGKITELV
SADSFSDNTRLVLLNALHFKGSWAHKFSEERTEEDIFWVGEEEQVKINYM
NQKAKFNYGFFEDLGCTALEMPYQDSDLSMFVLLPQERTGIYALAEKLKT
VNLVDLADKLTVEEVHVKFPKFKVDYSLELAEKLKQLGITKMFTDQAEFS
NLLESPEGVFVSKVLHKATIEVNEEGTEAAAATGMIMMTRMMTFPLQFQA
DRPFLYVIWNKKNILFAGAFVKAA*

BS15241.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
Spn55B-PA 374 CG10913-PA 1..374 1..374 1903 100 Plus
Spn42Da-PL 379 CG9453-PL 8..378 7..372 815 45.3 Plus
Spn42Da-PK 379 CG9453-PK 8..378 7..372 815 45.3 Plus
Spn42Da-PH 379 CG9453-PH 8..378 7..372 815 45.3 Plus
Spn42Da-PF 411 CG9453-PF 40..410 7..372 815 45.3 Plus