Clone Sequence Records
BS15241.3prime Sequence
842 bp (718 high quality bases) assembled on 2006-10-24
> BS15241.3prime
TCTCTAGGGGGGCGCGNNAAANGAATGGTNTAGAAAGNTTTTACGTTGGG
GGGAGGAAGGNGNAAGAGAAGAGGATGTTCTTCTTATTCCAGATGACGTA
GAGGAAGGGCCGGTCCGCCTGGAACTGCAGCGGGAAGGTCATCATGCGGG
TCATCATGATCATGCCGGTGGCAGCCGCCGCCTCCGTGCCCTCCTCATTC
ACCTCGATGGTGGCCTTGTGCAGCACCTTGGACACAAAGACGCCCTCGGG
GGATTCCAGCAGATTGCTAAACTCAGCTTGGTCCGTAAACATTTTCGTGA
TGCCCAGCTGCTTCAGTTTCTCGGCCAATTCCAGGGAGTAGTCCACCTTA
AACTTGGGGAACTTGACATGGACCTCTTCCACGGTCAACTTGTCGGCCAA
ATCCACCAGGTTCACAGTCTTGAGCTTCTCGGCTAGGGCGTAAATACCTG
TCCGCTCCTGCGGCAGCAGCACGAACATGGAGAGGTCAGAGTCCTGGTAG
GGCATCTCCAGGGCAGTGCAGCCCAGATCTTCGAAGAAGCCATAGTTGAA
CTTGGCCTTCTGGTTCATGTAGTTGATTTTAACTTGCTCCTCCTCGCCCA
CCCAGAAGATATCCTCCTCGGTGCGCTCCTCGCTGAACTTGTGCGCCCAG
CTGCCCTTGAAGTGGAGGGCATTGAACAGGACCAGCCTGGTGTTGTCCGA
GAACGAGTCCGCGCTGACCAGCTCCGTAATCTTGCCCTGAGTCTTGGCAT
TCACCCAGGCATTGATGGCCTGGGCGGCGGCTTCGTTGAGCGCAAAGTTA
ATGGACTCCGCCTCCGAATGATACTGCTCCTTGAGGGCCGAA
BS15241.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10913-PA | 1125 | Spn6-RA | 325..1098 | 841..68 | 3770 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn55B-RA | 1297 | CG10913-RA | 418..1191 | 841..68 | 3810 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18126764..18127297 | 841..308 | 2610 | 99.3 | Minus |
2R | 25286936 | 2R | 18127862..18128104 | 310..68 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:20:53 has no hits.
BS15241.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:20:59 Download gff for
BS15241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn6-PA | 326..1110 | 56..840 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:43 Download gff for
BS15241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10913-PA | 326..1110 | 56..840 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:42:15 Download gff for
BS15241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn55B-RA | 417..1203 | 56..842 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:49 Download gff for
BS15241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn55B-RA | 417..1203 | 56..842 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:49 Download gff for
BS15241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18126763..18127297 | 308..842 | 99 | -> | Minus |
2R | 18127865..18128116 | 56..307 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:42:15 Download gff for
BS15241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14014268..14014802 | 308..842 | 99 | -> | Minus |
arm_2R | 14015370..14015621 | 56..307 | 98 | | Minus |
BS15241.5prime Sequence
823 bp (739 high quality bases) assembled on 2006-10-24
> BS15241.5prime
GAAGTTATCAGTCGACATGTTCGATTTCAATTTGGAATTTGCGCGTGGAG
GTGCCCGTTTCACCAGCGAACTTTTTCAGCTTTTGAGCGCTGGCGGGCTC
AAGGAGAACGTCGTCTTCTCGCCCTTCTCCATCCAAACTTGCATTGCCCT
GGCCTTTGCCGGATCGCAGGGTGAAACCGCCGACGAGATCGCCAAGGCAC
TGCACTTCGTCTCCAACTTTCCGCCGGAGGTGGCCCAAACGTTCCAGTTT
GTGCTGGAGAAGTACCGCAACAGTAACCTGCTGCGCGTTGCCAACAAGCT
GTACGTGCAGGAGGGCAAGCAGCTGAAGCCCGCCTACCAGTCGGCCATCA
AGGAGCAGTATCATTCGGAGGCGGAGTCCATTAACTTTGCGCTCAACGAT
GCCGCCGCCCAGGCCATCAATGCCTGGGTGAATGCCAAGACTCAGGGCAA
GATTACGGAGCTGGTCAGCGCGGACTCGTTCTCGGACAACACCAGGCTGG
TCCTGCTCAATGCCCTCCACTTCAAGGGCAGCTGGGCGCACAAGTTCAGC
GAGGAGCGCACCGAGGAGGATATCTTCTGGGTGGGCGAGGAGGAGCAAGT
TAAAATCAACTACATGAACCAGAAGGCCAAGTTCAACTATGGCTTCTTCG
AAGATCTGGGCTGCACTGCCCTGGAGATGCCCTACCAGGACTCTGACCTC
TCCATGTTCGTGCTGCTGCCGCAGGAGCGGACAGGTATTTACGCCCCTAG
CCGAGAAGCTCAAGACTGTGAACCTGGTGGATTTGGCCGACAAGTTGACC
GTGAAAGAGGTCCATGTCAAGTT
BS15241.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10913-PA | 1125 | Spn6-RA | 1..730 | 17..746 | 3625 | 99.8 | Plus |
CG10913-PA | 1125 | Spn6-RA | 728..806 | 745..823 | 370 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn55B-RA | 1297 | CG10913-RA | 94..899 | 17..823 | 3980 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18126440..18127245 | 17..823 | 3955 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:29:56 has no hits.
BS15241.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:00 Download gff for
BS15241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn6-PA | 1..806 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:45 Download gff for
BS15241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10913-PA | 1..806 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:38 Download gff for
BS15241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn55B-RA | 78..899 | 3..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:08:05 Download gff for
BS15241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn55B-RA | 78..899 | 3..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:08:05 Download gff for
BS15241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18126424..18127245 | 3..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:38 Download gff for
BS15241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14013929..14014750 | 3..823 | 99 | | Plus |
BS15241.complete Sequence
1157 bp assembled on 2009-12-07
GenBank Submission: KX800856
> BS15241.complete
GAAGTTATCAGTCGACATGTTCGATTTCAATTTGGAATTTGCGCGTGGAG
GTGCCCGTTTCACCAGCGAACTTTTTCAGCTTTTGAGCGCTGGCGGGCTC
AAGGAGAACGTCGTCTTCTCGCCCTTCTCCATCCAAACTTGCATTGCCCT
GGCCTTTGCCGGATCGCAGGGTGAAACCGCCGACGAGATCGCCAAGGCAC
TGCACTTCGTCTCCAACTTTCCGCCGGAGGTGGCCCAAACGTTCCAGTTT
GTGCTGGAGAAGTACCGCAACAGTAACCTGCTGCGCGTTGCCAACAAGCT
GTACGTGCAGGAGGGCAAGCAGCTGAAGCCCGCCTACCAGTCGGCCATCA
AGGAGCAGTATCATTCGGAGGCGGAGTCCATTAACTTTGCGCTCAACGAT
GCCGCCGCCCAGGCCATCAATGCCTGGGTGAATGCCAAGACTCAGGGCAA
GATTACGGAGCTGGTCAGCGCGGACTCGTTCTCGGACAACACCAGGCTGG
TCCTGCTCAATGCCCTCCACTTCAAGGGCAGCTGGGCGCACAAGTTCAGC
GAGGAGCGCACCGAGGAGGATATCTTCTGGGTGGGCGAGGAGGAGCAAGT
TAAAATCAACTACATGAACCAGAAGGCCAAGTTCAACTATGGCTTCTTCG
AAGATCTGGGCTGCACTGCCCTGGAGATGCCCTACCAGGACTCTGACCTC
TCCATGTTCGTGCTGCTGCCGCAGGAGCGGACAGGTATTTACGCCCTAGC
CGAGAAGCTCAAGACTGTGAACCTGGTGGATTTGGCCGACAAGTTGACCG
TGGAAGAGGTCCATGTCAAGTTCCCCAAGTTTAAGGTGGACTACTCCCTG
GAATTGGCCGAGAAACTGAAGCAGCTGGGCATCACGAAAATGTTTACGGA
CCAAGCTGAGTTTAGCAATCTGCTGGAATCCCCCGAGGGCGTCTTTGTGT
CCAAGGTGCTGCACAAGGCCACCATCGAGGTGAATGAGGAGGGCACGGAG
GCGGCGGCTGCCACCGGCATGATCATGATGACCCGCATGATGACCTTCCC
GCTGCAGTTCCAGGCGGACCGGCCCTTCCTCTACGTCATCTGGAATAAGA
AGAACATCCTCTTCGCTGGCGCCTTCGTTAAGGCTGCCTAAAAGCTTTCT
AGACCAT
BS15241.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn55B-RA | 1125 | CG10913-PA | 1..1125 | 17..1141 | 5610 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn55B-RA | 1297 | CG10913-RA | 94..1222 | 17..1145 | 5630 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:29:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18126440..18127297 | 17..874 | 4275 | 99.9 | Plus |
2R | 25286936 | 2R | 18127862..18128135 | 872..1145 | 1370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:29:58 has no hits.
BS15241.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:46 Download gff for
BS15241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn6-RA | 141..1258 | 22..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:37 Download gff for
BS15241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn55B-RA | 99..1216 | 22..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:00 Download gff for
BS15241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn6-RA | 141..1258 | 22..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:43 Download gff for
BS15241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn55B-RA | 99..1216 | 22..1139 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:43 Download gff for
BS15241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18126445..18127297 | 22..874 | 99 | -> | Plus |
2R | 18127865..18128129 | 875..1139 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:37 Download gff for
BS15241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14013950..14014802 | 22..874 | 99 | -> | Plus |
arm_2R | 14015370..14015634 | 875..1139 | 100 | | Plus |
BS15241.pep Sequence
Translation from 16 to 1140
> BS15241.pep
MFDFNLEFARGGARFTSELFQLLSAGGLKENVVFSPFSIQTCIALAFAGS
QGETADEIAKALHFVSNFPPEVAQTFQFVLEKYRNSNLLRVANKLYVQEG
KQLKPAYQSAIKEQYHSEAESINFALNDAAAQAINAWVNAKTQGKITELV
SADSFSDNTRLVLLNALHFKGSWAHKFSEERTEEDIFWVGEEEQVKINYM
NQKAKFNYGFFEDLGCTALEMPYQDSDLSMFVLLPQERTGIYALAEKLKT
VNLVDLADKLTVEEVHVKFPKFKVDYSLELAEKLKQLGITKMFTDQAEFS
NLLESPEGVFVSKVLHKATIEVNEEGTEAAAATGMIMMTRMMTFPLQFQA
DRPFLYVIWNKKNILFAGAFVKAA*
BS15241.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn55B-PA | 374 | CG10913-PA | 1..374 | 1..374 | 1903 | 100 | Plus |
Spn42Da-PL | 379 | CG9453-PL | 8..378 | 7..372 | 815 | 45.3 | Plus |
Spn42Da-PK | 379 | CG9453-PK | 8..378 | 7..372 | 815 | 45.3 | Plus |
Spn42Da-PH | 379 | CG9453-PH | 8..378 | 7..372 | 815 | 45.3 | Plus |
Spn42Da-PF | 411 | CG9453-PF | 40..410 | 7..372 | 815 | 45.3 | Plus |