Clone Sequence Records
BS15242.complete Sequence
1424 bp assembled on 2009-12-07
GenBank Submission: KX805403
> BS15242.complete
GAAGTTATCAGTCGACATGGACAGATTGAAATTCAATAATTTGGTGATAT
CCAACAAGAAGGTCATTCAAAAGGCACGCGCCCAGACCATCGCCAAAATC
GTACAAAAGCTGCGAAAGACAAAAGAGGCTCTGGCCAAAAATCCAGACAG
TGAAAAGGAAAAGATTCGTTTACGCAAGAACACAGAATGCCTGGCCCAGT
TGAAGGCTCTAAAATATATGGATATGGTACGCCAGTCGCTCCTGCAGGAG
GGCACAAATCCCAATGCGGTGATTGCTAACGAGCGCTCCACGCCGGATGA
ACTGGGCATTGCCATGCTGCGGCTAAACAAATTGATGCACGGACTGGTGG
ACAAGTTTGTGGAAACCTTGAAGCTGAGCACCACCGATAAGGAGGCCAAG
TGGCGTGAGGAGATCCTAGAGACGAGCAAGCGAAGGGCCAAAATAGAACG
CACTGAGGAGCGGAAGAGGAAGCGCAAGGAGCTGAAGGAGCAGAAGGCCC
AAACCAAAAACCGACTGGAGTGGTTAGAGCAGAACAAAGTGGTGGATGCA
GATGTTAATGGAGCAACTGCGGAAACGCCCACTCTTCAAGTCAGCAAAGT
AAATGATCAGGAAATACCACAGTCTTTTGCAAAAACTGAAAATTCTCCAG
TTCTCAAAGTCAAAAAGGAAAAGACACCTAAAACACCAGCCAAAAAAGAA
AGAAACCTTCAGAAAAAACAAGCTTTTGATGAGCAGATCAACCCGGAGAT
AACTAAGCTCAGTTCCAAAAAGCAGAATTTAAATACAATCAAGGAGAATA
ATGCAGAGCCACAACTAGAAGGCAGACCGAAAGAATCTAAGCCAAAACCC
TTCGAGAAAAAACCAGCCAGAGAGCAGAAGCCTAAGCCACGATTAGAAAG
GCAGCCAAGTATCGATGAAGAAGAACCACAACTTGACAATAATCGTCCCA
CACATGTCGTTGATCCCTTCTTCATTACGGAATCAGGCCAGCCCTACTTG
TCCAGCGCCGTGGTTCTTTCCGGGGACAATGACAGCGAAGCTGATGAGGA
ACAGGCACCGCCGCCAGTCAAAAGGTTCCGCAATGAGGATCGACGGTCGA
ACACATATCGGGAGAAACCGGAAAGACAGCCAGAGTTCAAAGCGAGAAAG
CCAACTGATGATCGTCATCCCTCCTGGCTGGCTAAGCAACAGCAGAAACC
AATCATTGGTGATTTTAGAGGCAAGAAGATTACATTCGGCGACGACGGCC
AGGCGGCGGAAATTATTGCTCCAAGTATCAATCAATTAACCGCTACTGCT
GCTCCTTTGCCCACCGATGGCATGCACCCGTCTTGGGTGGCCAAACAGAA
GTTTAAGCCGAAAATTGCCGCGTTTCAGGGCACAAAGATTAAGTTTGACG
AAGATTAAAAGCTTTCTAGACCAT
BS15242.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rlb1-RA | 1392 | CG8161-PA | 1..1392 | 17..1408 | 6960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rlb1-RA | 1444 | CG8161-RA | 36..1429 | 16..1409 | 6970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9513446..9514812 | 43..1409 | 6835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:58:56 has no hits.
BS15242.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:57 Download gff for
BS15242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rlb1-RA | 18..1407 | 17..1406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:49 Download gff for
BS15242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rlb1-RA | 37..1426 | 17..1406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:06 Download gff for
BS15242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rlb1-RA | 18..1407 | 17..1406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:15 Download gff for
BS15242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rlb1-RA | 37..1426 | 17..1406 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:15 Download gff for
BS15242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9513363..9513389 | 17..43 | 100 | -> | Plus |
| 3R | 9513447..9514809 | 44..1406 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:49 Download gff for
BS15242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5339085..5339111 | 17..43 | 100 | -> | Plus |
| arm_3R | 5339169..5340531 | 44..1406 | 100 | | Plus |
BS15242.3prime Sequence
770 bp (662 high quality bases) assembled on 2006-10-24
> BS15242.3prime
ATGGTCTAGAAAGCTTTTCCCCTTCGGCAAACTTAATCTTTGTGCCCTGA
AACGCGGCAATTTTCGGCTTAAACTTCTGTTTGGCCACCCAAGACGGGTG
CATGCCATCGGTGGGCAAAGGAGCAGCAGTAGCGGTTAATTGATTGATAC
TTGGAGCAATAATTTCCGCCGCCTGGCCGTCGTCGCCGAATGTAATCTTC
TTGCCTCTAAAATCACCAATGATTGGTTTCTGCTGTTGCTTAGCCAGCCA
GGAGGGATGACGATCATCAGTTGGCTTTCTCGCTTTGAACTCTGGCTGTC
TTTCCGGTTTCTCCCGATATGTGTTCGACCGTCGATCCTCATTGCGGAAC
CTTTTGACTGGCGGCGGTGCCTGTTCCTCATCAGCTTCGCTGTCATTGTC
CCCGGAAAGAACCACGGCGCTGGACAAGTAGGGCTGGCCTGATTCCGTAA
TGAAGAAGGGATCAACGACATGTGTGGGACGATTATTGTCAAGTTGTGGT
TCTTCTTCATCGATACTTGGCTGCCTTTCTAATCGTGGCTTAGGCTTCTG
CTCTCTGGCTGGTTTTTTCTCGAAGGGTTTTGGCTTAGATTCTTTCGGTC
TGCCTTCTAGTTGTGGCTCTGCATTATTCTCCTTGATTGTATTTAAATTC
TGCTTTTTGGAACTGAGCTTAGTTATCTCCGGGTTTGATCTGCTCATCAA
AAGCTTGTTTTTTCTGAAAGTTTCTTTCTTTTTTGGCTGGTGTTTTAGGT
GTCCTTTTCCTTTTTGAACT
BS15242.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8161-PA | 1392 | Rlb1-RA | 724..1387 | 685..22 | 3295 | 99.8 | Minus |
| CG8161-PA | 1392 | Rlb1-RA | 657..725 | 753..685 | 320 | 98.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:07:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rlb1-RA | 1444 | CG8161-RA | 680..1423 | 767..22 | 3650 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:07:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9514063..9514806 | 767..22 | 3600 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:07:53 has no hits.
BS15242.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:01 Download gff for
BS15242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rlb1-PA | 642..1392 | 17..770 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:46 Download gff for
BS15242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8161-PA | 642..1392 | 17..770 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:50:52 Download gff for
BS15242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rlb1-RA | 678..1429 | 16..770 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:26 Download gff for
BS15242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rlb1-RA | 678..1429 | 16..770 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:26 Download gff for
BS15242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9514061..9514812 | 16..770 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:50:52 Download gff for
BS15242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5339783..5340534 | 16..770 | 98 | | Minus |
BS15242.5prime Sequence
836 bp (780 high quality bases) assembled on 2006-10-24
> BS15242.5prime
GAAGTTATCAGTCGACATGGACAGATTGAAATTCAATAATTTGGTGATAT
CCAACAAGAAGGTCATTCAAAAGGCACGCGCCCAGACCATCGCCAAAATC
GTACAAAAGCTGCGAAAGACAAAAGAGGCTCTGGCCAAAAATCCAGACAG
TGAAAAGGAAAAGATTCGTTTACGCAAGAACACAGAATGCCTGGCCCAGT
TGAAGGCTCTAAAATATATGGATATGGTACGCCAGTCGCTCCTGCAGGAG
GGCACAAATCCCAATGCGGTGATTGCTAACGAGCGCTCCACGCCGGATGA
ACTGGGCATTGCCATGCTGCGGCTAAACAAATTGATGCACGGACTGGTGG
ACAAGTTTGTGGAAACCTTGAAGCTGAGCACCACCGATAAGGAGGCCAAG
TGGCGTGAGGAGATCCTAGAGACGAGCAAGCGAAGGGCCAAAATAGAACG
CACTGAGGAGCGGAAGAGGAAGCGCAAGGAGCTGAAGGAGCAGAAGGCCC
AAACCAAAAACCGACTGGAGTGGTTAGAGCAGAACAAAGTGGTGGATGCA
GATGTTAATGGAGCAACTGCGGAAACGCCCACTCTTCAAGTCAGCAAAGT
AAATGATCAGGAAATACCACAGTCTTTTGCAAAAACTGAAAATTCTCCAG
TTCTCAAAGTCAAAAAGGAAAAGACACCTAAAACACCAGCCAAAAAAGAA
AGAAACCTTCAGAAAAAACAAGCTTTTGATGAGCAGATCAACCCGGAGAT
AACTAAGCTCAGTTCCAAAAAGCAGAATTTAAATACAATCAAGGAGAATA
ATGCAGAGCCACAACTAGAAGGCAGACCGAAAGAAT
BS15242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8161-PA | 1392 | Rlb1-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rlb1-RA | 1444 | CG8161-RA | 36..856 | 16..836 | 4105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9513446..9514239 | 43..836 | 3970 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 00:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| diver | 6112 | diver Tinker 6112bp | 4262..4389 | 275..151 | 135 | 62.3 | Minus |
BS15242.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:02 Download gff for
BS15242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rlb1-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:47 Download gff for
BS15242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8161-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:23:41 Download gff for
BS15242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rlb1-RA | 33..856 | 9..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:50 Download gff for
BS15242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rlb1-RA | 33..856 | 9..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:50 Download gff for
BS15242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9513447..9514239 | 44..836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:23:41 Download gff for
BS15242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5339169..5339961 | 44..836 | 100 | | Plus |
BS15242.pep Sequence
Translation from 16 to 1407
> BS15242.pep
MDRLKFNNLVISNKKVIQKARAQTIAKIVQKLRKTKEALAKNPDSEKEKI
RLRKNTECLAQLKALKYMDMVRQSLLQEGTNPNAVIANERSTPDELGIAM
LRLNKLMHGLVDKFVETLKLSTTDKEAKWREEILETSKRRAKIERTEERK
RKRKELKEQKAQTKNRLEWLEQNKVVDADVNGATAETPTLQVSKVNDQEI
PQSFAKTENSPVLKVKKEKTPKTPAKKERNLQKKQAFDEQINPEITKLSS
KKQNLNTIKENNAEPQLEGRPKESKPKPFEKKPAREQKPKPRLERQPSID
EEEPQLDNNRPTHVVDPFFITESGQPYLSSAVVLSGDNDSEADEEQAPPP
VKRFRNEDRRSNTYREKPERQPEFKARKPTDDRHPSWLAKQQQKPIIGDF
RGKKITFGDDGQAAEIIAPSINQLTATAAPLPTDGMHPSWVAKQKFKPKI
AAFQGTKIKFDED*
BS15242.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rlb1-PA | 463 | CG8161-PA | 1..463 | 1..463 | 2373 | 100 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1341..1627 | 23..306 | 163 | 26.1 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1341..1627 | 23..306 | 163 | 26.1 | Plus |
