Clone BS15245 Report

Search the DGRC for BS15245

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS16-RA
Protein status:BS15245.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15245.5prime Sequence

420 bp (420 high quality bases) assembled on 2006-10-24

> BS15245.5prime
GAAGTTATCAGTCGACATGTCTCTATCGCCAGCCAGTGGCATTGGTCGTT
TCTACGCCAAGTCGGCAAAAATCATACGTTTCGTACGCCTGGGATGCACC
AATCGGCCTTTTTATCACATTGTCGTCATGGAGAGGCGCAAGAACCAGCA
CCAGCCTGTCATCGAGCAGGTGGGCTCCTTTGATCCCCTGCCCAACGATT
ACAACGAACGACTGGTGGCCCTGAACACGGAGAGAATTCGCTATTGGCTG
GGCAAAGGTGCACACTTGTCCACGCCGGCTGCAGAACTCCTGGGAATTGC
CGGACTACTGCCCATCCACCCGCGCACCTACATGACCGCCTGGCGGAACC
GGAGGACAGCTGCTGAAGCGGAGGCGTCGCCAGAAAAGGCGGAATCAACC
GCATAAAAGCTTTCTAGACC

BS15245.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8338-PA 390 mRpS16-RA 1..390 17..406 1950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS16-RA 546 CG8338-RA 112..502 17..407 1955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14173030..14173305 407..132 1380 100 Minus
2R 25286936 2R 14173369..14173485 133..17 585 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:39:24 has no hits.

BS15245.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:09 Download gff for BS15245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8338-PA 1..390 17..406 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:56 Download gff for BS15245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8338-PA 1..390 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:22 Download gff for BS15245.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS16-RA 104..502 7..407 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:19 Download gff for BS15245.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS16-RA 104..502 7..407 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:19 Download gff for BS15245.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14173030..14173303 134..407 100 <- Minus
2R 14173369..14173493 7..133 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:22 Download gff for BS15245.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10060535..10060808 134..407 100 <- Minus
arm_2R 10060874..10060998 7..133 96   Minus

BS15245.3prime Sequence

420 bp (420 high quality bases) assembled on 2006-10-24

> BS15245.3prime
ATGGTCTAGAAAGCTTTTATGCGGTTGATTCCGCCTTTTCTGGCGACGCC
TCCGCTTCAGCAGCTGTCCTCCGGTTCCGCCAGGCGGTCATGTAGGTGCG
CGGGTGGATGGGCAGTAGTCCGGCAATTCCCAGGAGTTCTGCAGCCGGCG
TGGACAAGTGTGCACCTTTGCCCAGCCAATAGCGAATTCTCTCCGTGTTC
AGGGCCACCAGTCGTTCGTTGTAATCGTTGGGCAGGGGATCAAAGGAGCC
CACCTGCTCGATGACAGGCTGGTGCTGGTTCTTGCGCCTCTCCATGACGA
CAATGTGATAAAAAGGCCGATTGGTGCATCCCAGGCGTACGAAACGTATG
ATTTTTGCCGACTTGGCGTAGAAACGACCAATGCCACTGGCTGGCGATAG
AGACATGTCGACTGATAACT

BS15245.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8338-PA 390 mRpS16-RA 1..390 406..17 1950 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS16-RA 546 CG8338-RA 112..502 406..16 1955 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14173030..14173305 16..291 1380 100 Plus
2R 25286936 2R 14173369..14173485 290..406 585 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:30:36 has no hits.

BS15245.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:08 Download gff for BS15245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8338-PA 1..390 17..406 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:54 Download gff for BS15245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8338-PA 1..390 17..406 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:44 Download gff for BS15245.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS16-RA 104..502 16..416 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:50 Download gff for BS15245.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS16-RA 104..502 16..416 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:50 Download gff for BS15245.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14173030..14173303 16..289 100 <- Plus
2R 14173369..14173493 290..416 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:44 Download gff for BS15245.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10060535..10060808 16..289 100 <- Plus
arm_2R 10060874..10060998 290..416 96   Plus

BS15245.complete Sequence

422 bp assembled on 2006-11-01

GenBank Submission: FJ637899

> BS15245.complete
GAAGTTATCAGTCGACATGTCTCTATCGCCAGCCAGTGGCATTGGTCGTT
TCTACGCCAAGTCGGCAAAAATCATACGTTTCGTACGCCTGGGATGCACC
AATCGGCCTTTTTATCACATTGTCGTCATGGAGAGGCGCAAGAACCAGCA
CCAGCCTGTCATCGAGCAGGTGGGCTCCTTTGATCCCCTGCCCAACGATT
ACAACGAACGACTGGTGGCCCTGAACACGGAGAGAATTCGCTATTGGCTG
GGCAAAGGTGCACACTTGTCCACGCCGGCTGCAGAACTCCTGGGAATTGC
CGGACTACTGCCCATCCACCCGCGCACCTACATGACCGCCTGGCGGAACC
GGAGGACAGCTGCTGAAGCGGAGGCGTCGCCAGAAAAGGCGGAATCAACC
GCATAAAAGCTTTCTAGACCAT

BS15245.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS16-RA 390 CG8338-PA 1..390 17..406 1950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS16-RA 546 CG8338-RA 112..502 17..407 1955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14173030..14173305 407..132 1380 100 Minus
2R 25286936 2R 14173369..14173485 133..17 585 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:55:28 has no hits.

BS15245.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:35 Download gff for BS15245.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS16-RA 1..390 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:51 Download gff for BS15245.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS16-RA 44..442 7..407 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:04 Download gff for BS15245.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS16-RA 112..499 17..404 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:35 Download gff for BS15245.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS16-RA 44..442 7..407 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:25 Download gff for BS15245.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS16-RA 112..499 17..404 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:25 Download gff for BS15245.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14173369..14173485 17..133 100   Minus
2R 14173033..14173303 134..404 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:04 Download gff for BS15245.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10060538..10060808 134..404 100 <- Minus
arm_2R 10060874..10060990 17..133 100   Minus

BS15245.pep Sequence

Translation from 16 to 405

> BS15245.pep
MSLSPASGIGRFYAKSAKIIRFVRLGCTNRPFYHIVVMERRKNQHQPVIE
QVGSFDPLPNDYNERLVALNTERIRYWLGKGAHLSTPAAELLGIAGLLPI
HPRTYMTAWRNRRTAAEAEASPEKAESTA*

BS15245.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS16-PA 129 CG8338-PA 1..129 1..129 673 100 Plus