Clone BS15246 Report

Search the DGRC for BS15246

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptGC1-RA
Protein status:BS15246.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15246.5prime Sequence

885 bp (745 high quality bases) assembled on 2006-10-24

> BS15246.5prime
GAAGTTATCAGTCGACATGTCGAGCAGTGCAACCATCGCAACGCCGCTGC
CGCAGCCGCAGCACCAGCAATTCGCCCTGCTGCCGAAGATCATTAACGGC
GGAATTGCGGGAATCATCGGAGTGACATGCGTCTTCCCACTGGACTTGGT
CAAGACGAGGCTGCAAAACCAGCAGATCGGACCCAATGGCGAACGCATGT
ACAACAGCATGTTCGATTGCTTCCGCAAGACGTACAAGGCCGAAGGATAC
TTTGGCATGTACCGCGGCTCTGGCGTGAACATCCTGCTAATCACACCTGA
GAAGGCCATCAAGTTGACCGCCAACGATTACTTCCGCCACAAGCTGACCA
CCAAGGATGGCAAACTTCCGCTGACCAGTCAGATGGTTGCCGGCGGTCTG
GCCGGTGCATTCCAAATTATCGTCACCACGCCCATGGAGCTTCTCAAGAT
CCAGATGCAGGATGCGGGTCGCGTGGCGGCGGCGGCCAAATTGGCTGGAA
AGACGGTGGAGAAGGTGTCGGCCACCCAATTGGCTTCCCAGCTTATCAAG
GACAAGGGCATCTTTGGCCTGTACAAGGGTATCGGTGCCACAGGACTGCG
AGATGTCACCTTCTCTATCATTTACTTCCCCCTTTTCGCTACTCTCAATG
ACCTGGGTCCACGACGAAACGATGGATCTGGCGAGGCTGTGTTCTGGTGC
TCCTTCCTGGCGGGCTTGGCGGCCGGTTCCACCGCTGCCCTCGCAGTTAA
TCCCTTCGACGTGGTCAAGACGCGTCTGCAGGCGATTAAGAAGGCCGACG
GGGAGAAGGAGTTCAAGGGCATATCAGATTGTATCACTAAGACACTGAAG
CACGAGGGAACCACCGCCTTCTTCAAGGGCGGCCT

BS15246.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG18347-PA 966 CG18347-RA 1..869 17..885 4270 99.6 Plus
CG12201-PA 723 CG12201-RA 166..206 422..462 155 95.1 Plus
CG12201-PB 960 CG12201-RB 403..443 422..462 155 95.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
GC1-RB 1658 CG18347-RB 182..1050 17..885 4300 99.7 Plus
GC1-RA 1450 CG18347-RA 182..1050 17..885 4300 99.7 Plus
GC2-RB 1070 CG12201-RB 146..540 83..477 460 75.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11970288..11970775 211..698 2425 99.8 Plus
3R 32079331 3R 11970833..11970974 696..837 695 99.3 Plus
3R 32079331 3R 11970095..11970231 76..212 685 100 Plus
3R 32079331 3R 11969218..11969276 17..75 295 100 Plus
3R 32079331 3R 11972130..11972366 241..477 285 74.7 Plus
3R 32079331 3R 11971901..11972030 83..212 245 79.2 Plus
3R 32079331 3R 11971031..11971078 838..885 225 97.9 Plus
Blast to na_te.dros performed on 2015-02-11 03:29:45 has no hits.

BS15246.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:12 Download gff for BS15246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18347-PA 1..869 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:59 Download gff for BS15246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18347-PA 1..869 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:36 Download gff for BS15246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18347-RA 173..1050 10..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:06:24 Download gff for BS15246.5prime
Subject Subject Range Query Range Percent Splice Strand
GC1-RA 173..1050 10..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:24 Download gff for BS15246.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11969211..11969276 8..75 94 -> Plus
3R 11970095..11970229 76..210 100 -> Plus
3R 11970288..11970773 211..696 99 -> Plus
3R 11970834..11970974 697..837 99 -> Plus
3R 11971031..11971078 838..885 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:36 Download gff for BS15246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7794933..7794998 8..75 94 -> Plus
arm_3R 7795817..7795951 76..210 100 -> Plus
arm_3R 7796010..7796495 211..696 99 -> Plus
arm_3R 7796556..7796696 697..837 99 -> Plus
arm_3R 7796753..7796800 838..885 97   Plus

BS15246.3prime Sequence

838 bp (756 high quality bases) assembled on 2006-10-24

> BS15246.3prime
ATGGTCTAGAAAGCTTCTACTTTTTCTGATAGCCCAGCAGGCCCTCGGCC
ACGCCCAGATAGTAGACCGTTTGAGCGATTCCGAACAGAGGAGCAATCAC
AATCATTCGGCACAGGCCGCCCTTGAAGAAGGCGGTGGGTCCCTCGTGCT
TCAGTGTCTTAGTGATACAATCTGATATGCCCTTGAACTCCTTCTCACCG
TCGGCCTTCTTAATCGCCTGCAGACGCGTCTTGACCACGTCGAAGGGATT
AACTGCGAGGGCAGCGGTGGAACCGGCCGCCAAGCCCGCCAGGAAGGAGC
ACCAGAACACAGCCTCGCCAGATCCATCGTTTCGTCGTGGACCCAGGTCA
TTGAGAGTAGCGAAAAGGGGGAAGTAAATGATAGAGAAGGTGACATCTCG
CAGTCCTGTGGCACCGATACCCTTGTACAGGCCAAAGATGCCCTTGTCCT
TGATAAGCTGGGAAGCCAATTGGGTGGCCGACACCTTCTCCACCGTCTTT
CCAGCCAATTTGGCCGCCGCCGCCACGCGACCCGCATCCTGCATCTGGAT
CTTGAGAAGCTCCATGGGCGTGGTGACGATAATTTGGAATGCACCGGCCA
GACCGCCGGCAACCATCTGACTGGTCAGCGGAAGTTTGCCATCCTTGGTG
GTCAGCTTGTGGCGGAAGTAATCGTTGGCGGTCAACTTGATGGCCTTCTC
AGGTGTGATTAGCAGGATGTTCACGCCAGAGCCGCGGTACATGCCAAAGT
ATCCTTCGGCCTTGTACGTCTTGCGGAAGCAATCGAACATGCTGTTGTAC
ATGCGTTCGCCATTGGGTCCGATCTGCTGGTTTTGCAG

BS15246.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG18347-PA 966 CG18347-RA 145..966 838..17 4085 99.8 Minus
CG12201-PA 723 CG12201-RA 166..206 577..537 155 95.1 Minus
CG12201-PB 960 CG12201-RB 403..443 577..537 155 95.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
GC1-RB 1658 CG18347-RB 326..1147 838..17 4095 99.9 Minus
GC1-RA 1450 CG18347-RA 326..1147 838..17 4095 99.9 Minus
Tango9-RB 3673 CG10007-RB 3505..3649 17..161 725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11970288..11970775 788..301 2425 99.8 Minus
3R 32079331 3R 11971031..11971175 161..17 725 100 Minus
3R 32079331 3R 11970833..11970974 303..162 710 100 Minus
3R 32079331 3R 11972130..11972366 758..522 285 74.7 Minus
3R 32079331 3R 11970180..11970231 838..787 260 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:27:14 has no hits.

BS15246.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:10 Download gff for BS15246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18347-PA 145..966 17..838 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:57 Download gff for BS15246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18347-PA 145..966 17..838 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:40:12 Download gff for BS15246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18347-RA 326..1150 13..838 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:01 Download gff for BS15246.3prime
Subject Subject Range Query Range Percent Splice Strand
GC1-RA 326..1150 13..838 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:01 Download gff for BS15246.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11970180..11970229 789..838 100 -> Minus
3R 11970288..11970773 303..788 99 -> Minus
3R 11970834..11970974 162..302 100 -> Minus
3R 11971031..11971178 13..161 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:40:12 Download gff for BS15246.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7796753..7796900 13..161 98   Minus
arm_3R 7795902..7795951 789..838 100 -> Minus
arm_3R 7796010..7796495 303..788 99 -> Minus
arm_3R 7796556..7796696 162..302 100 -> Minus

BS15246.complete Sequence

998 bp assembled on 2006-11-01

GenBank Submission: FJ637900

> BS15246.complete
GAAGTTATCAGTCGACATGTCGAGCAGTGCAACCATCGCAACGCCGCTGC
CGCAGCCGCAGCACCAGCAATTCGCCCTGCTGCCGAAGATCATTAACGGC
GGAATTGCGGGAATCATCGGAGTGACATGCGTCTTCCCACTGGACTTGGT
CAAGACGAGGCTGCAAAACCAGCAGATCGGACCCAATGGCGAACGCATGT
ACAACAGCATGTTCGATTGCTTCCGCAAGACGTACAAGGCCGAAGGATAC
TTTGGCATGTACCGCGGCTCTGGCGTGAACATCCTGCTAATCACACCTGA
GAAGGCCATCAAGTTGACCGCCAACGATTACTTCCGCCACAAGCTGACCA
CCAAGGATGGCAAACTTCCGCTGACCAGTCAGATGGTTGCCGGCGGTCTG
GCCGGTGCATTCCAAATTATCGTCACCACGCCCATGGAGCTTCTCAAGAT
CCAGATGCAGGATGCGGGTCGCGTGGCGGCGGCGGCCAAATTGGCTGGAA
AGACGGTGGAGAAGGTGTCGGCCACCCAATTGGCTTCCCAGCTTATCAAG
GACAAGGGCATCTTTGGCCTGTACAAGGGTATCGGTGCCACAGGACTGCG
AGATGTCACCTTCTCTATCATTTACTTCCCCCTTTTCGCTACTCTCAATG
ACCTGGGTCCACGACGAAACGATGGATCTGGCGAGGCTGTGTTCTGGTGC
TCCTTCCTGGCGGGCTTGGCGGCCGGTTCCACCGCTGCCCTCGCAGTTAA
TCCCTTCGACGTGGTCAAGACGCGTCTGCAGGCGATTAAGAAGGCCGACG
GTGAGAAGGAGTTCAAGGGCATATCAGATTGTATCACTAAGACACTGAAG
CACGAGGGACCCACCGCCTTCTTCAAGGGCGGCCTGTGCCGAATGATTGT
GATTGCTCCTCTGTTCGGAATCGCTCAAACGGTCTACTATCTGGGCGTGG
CCGAGGGCCTGCTGGGCTATCAGAAAAAGTAGAAGCTTTCTAGACCAT

BS15246.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
GC1-RB 966 CG18347-PB 1..966 17..982 4815 99.9 Plus
GC1-RA 966 CG18347-PA 1..966 17..982 4815 99.9 Plus
GC2-RB 960 CG12201-PB 64..458 83..477 460 74.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
GC1-RB 1658 CG18347-RB 182..1147 17..982 4815 99.9 Plus
GC1-RA 1450 CG18347-RA 182..1147 17..982 4815 99.9 Plus
Tango9-RB 3673 CG10007-RB 3505..3649 982..838 725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11970288..11970775 211..698 2425 99.8 Plus
3R 32079331 3R 11971031..11971175 838..982 725 100 Plus
3R 32079331 3R 11970833..11970974 696..837 710 100 Plus
3R 32079331 3R 11970095..11970231 76..212 685 100 Plus
3R 32079331 3R 11969218..11969276 17..75 295 100 Plus
3R 32079331 3R 11972130..11972366 241..477 285 74.7 Plus
3R 32079331 3R 11971901..11972030 83..212 245 79.2 Plus
Blast to na_te.dros performed on 2014-11-27 10:37:25 has no hits.

BS15246.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:25 Download gff for BS15246.complete
Subject Subject Range Query Range Percent Splice Strand
CG18347-RA 1..966 17..982 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:05 Download gff for BS15246.complete
Subject Subject Range Query Range Percent Splice Strand
CG18347-RA 152..1129 10..986 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:20:57 Download gff for BS15246.complete
Subject Subject Range Query Range Percent Splice Strand
CG18347-RA 182..1147 17..982 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:26 Download gff for BS15246.complete
Subject Subject Range Query Range Percent Splice Strand
CG18347-RA 152..1129 10..986 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:38 Download gff for BS15246.complete
Subject Subject Range Query Range Percent Splice Strand
GC1-RA 182..1147 17..982 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:38 Download gff for BS15246.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11971031..11971175 838..982 100   Plus
3R 11970095..11970229 76..210 100 -> Plus
3R 11969218..11969276 17..75 100 -> Plus
3R 11970288..11970773 211..696 99 -> Plus
3R 11970834..11970974 697..837 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:20:57 Download gff for BS15246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7794940..7794998 17..75 100 -> Plus
arm_3R 7795817..7795951 76..210 100 -> Plus
arm_3R 7796010..7796495 211..696 99 -> Plus
arm_3R 7796556..7796696 697..837 100 -> Plus
arm_3R 7796753..7796897 838..982 100   Plus

BS15246.pep Sequence

Translation from 16 to 981

> BS15246.pep
MSSSATIATPLPQPQHQQFALLPKIINGGIAGIIGVTCVFPLDLVKTRLQ
NQQIGPNGERMYNSMFDCFRKTYKAEGYFGMYRGSGVNILLITPEKAIKL
TANDYFRHKLTTKDGKLPLTSQMVAGGLAGAFQIIVTTPMELLKIQMQDA
GRVAAAAKLAGKTVEKVSATQLASQLIKDKGIFGLYKGIGATGLRDVTFS
IIYFPLFATLNDLGPRRNDGSGEAVFWCSFLAGLAAGSTAALAVNPFDVV
KTRLQAIKKADGEKEFKGISDCITKTLKHEGPTAFFKGGLCRMIVIAPLF
GIAQTVYYLGVAEGLLGYQKK*

BS15246.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
GC1-PB 321 CG18347-PB 1..321 1..321 1642 100 Plus
GC1-PA 321 CG18347-PA 1..321 1..321 1642 100 Plus
GC2-PB 319 CG12201-PB 12..315 13..320 1112 67.9 Plus
GC2-PD 240 CG12201-PD 1..236 81..320 837 66.2 Plus
aralar1-PB 679 CG2139-PB 333..599 28..309 544 41.7 Plus