Clone Sequence Records
BS15246.5prime Sequence
885 bp (745 high quality bases) assembled on 2006-10-24
> BS15246.5prime
GAAGTTATCAGTCGACATGTCGAGCAGTGCAACCATCGCAACGCCGCTGC
CGCAGCCGCAGCACCAGCAATTCGCCCTGCTGCCGAAGATCATTAACGGC
GGAATTGCGGGAATCATCGGAGTGACATGCGTCTTCCCACTGGACTTGGT
CAAGACGAGGCTGCAAAACCAGCAGATCGGACCCAATGGCGAACGCATGT
ACAACAGCATGTTCGATTGCTTCCGCAAGACGTACAAGGCCGAAGGATAC
TTTGGCATGTACCGCGGCTCTGGCGTGAACATCCTGCTAATCACACCTGA
GAAGGCCATCAAGTTGACCGCCAACGATTACTTCCGCCACAAGCTGACCA
CCAAGGATGGCAAACTTCCGCTGACCAGTCAGATGGTTGCCGGCGGTCTG
GCCGGTGCATTCCAAATTATCGTCACCACGCCCATGGAGCTTCTCAAGAT
CCAGATGCAGGATGCGGGTCGCGTGGCGGCGGCGGCCAAATTGGCTGGAA
AGACGGTGGAGAAGGTGTCGGCCACCCAATTGGCTTCCCAGCTTATCAAG
GACAAGGGCATCTTTGGCCTGTACAAGGGTATCGGTGCCACAGGACTGCG
AGATGTCACCTTCTCTATCATTTACTTCCCCCTTTTCGCTACTCTCAATG
ACCTGGGTCCACGACGAAACGATGGATCTGGCGAGGCTGTGTTCTGGTGC
TCCTTCCTGGCGGGCTTGGCGGCCGGTTCCACCGCTGCCCTCGCAGTTAA
TCCCTTCGACGTGGTCAAGACGCGTCTGCAGGCGATTAAGAAGGCCGACG
GGGAGAAGGAGTTCAAGGGCATATCAGATTGTATCACTAAGACACTGAAG
CACGAGGGAACCACCGCCTTCTTCAAGGGCGGCCT
BS15246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18347-PA | 966 | CG18347-RA | 1..869 | 17..885 | 4270 | 99.6 | Plus |
CG12201-PA | 723 | CG12201-RA | 166..206 | 422..462 | 155 | 95.1 | Plus |
CG12201-PB | 960 | CG12201-RB | 403..443 | 422..462 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:29:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GC1-RB | 1658 | CG18347-RB | 182..1050 | 17..885 | 4300 | 99.7 | Plus |
GC1-RA | 1450 | CG18347-RA | 182..1050 | 17..885 | 4300 | 99.7 | Plus |
GC2-RB | 1070 | CG12201-RB | 146..540 | 83..477 | 460 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11970288..11970775 | 211..698 | 2425 | 99.8 | Plus |
3R | 32079331 | 3R | 11970833..11970974 | 696..837 | 695 | 99.3 | Plus |
3R | 32079331 | 3R | 11970095..11970231 | 76..212 | 685 | 100 | Plus |
3R | 32079331 | 3R | 11969218..11969276 | 17..75 | 295 | 100 | Plus |
3R | 32079331 | 3R | 11972130..11972366 | 241..477 | 285 | 74.7 | Plus |
3R | 32079331 | 3R | 11971901..11972030 | 83..212 | 245 | 79.2 | Plus |
3R | 32079331 | 3R | 11971031..11971078 | 838..885 | 225 | 97.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:29:45 has no hits.
BS15246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:12 Download gff for
BS15246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:59 Download gff for
BS15246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:36 Download gff for
BS15246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-RA | 173..1050 | 10..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:06:24 Download gff for
BS15246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GC1-RA | 173..1050 | 10..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:24 Download gff for
BS15246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11969211..11969276 | 8..75 | 94 | -> | Plus |
3R | 11970095..11970229 | 76..210 | 100 | -> | Plus |
3R | 11970288..11970773 | 211..696 | 99 | -> | Plus |
3R | 11970834..11970974 | 697..837 | 99 | -> | Plus |
3R | 11971031..11971078 | 838..885 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:36 Download gff for
BS15246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7794933..7794998 | 8..75 | 94 | -> | Plus |
arm_3R | 7795817..7795951 | 76..210 | 100 | -> | Plus |
arm_3R | 7796010..7796495 | 211..696 | 99 | -> | Plus |
arm_3R | 7796556..7796696 | 697..837 | 99 | -> | Plus |
arm_3R | 7796753..7796800 | 838..885 | 97 | | Plus |
BS15246.3prime Sequence
838 bp (756 high quality bases) assembled on 2006-10-24
> BS15246.3prime
ATGGTCTAGAAAGCTTCTACTTTTTCTGATAGCCCAGCAGGCCCTCGGCC
ACGCCCAGATAGTAGACCGTTTGAGCGATTCCGAACAGAGGAGCAATCAC
AATCATTCGGCACAGGCCGCCCTTGAAGAAGGCGGTGGGTCCCTCGTGCT
TCAGTGTCTTAGTGATACAATCTGATATGCCCTTGAACTCCTTCTCACCG
TCGGCCTTCTTAATCGCCTGCAGACGCGTCTTGACCACGTCGAAGGGATT
AACTGCGAGGGCAGCGGTGGAACCGGCCGCCAAGCCCGCCAGGAAGGAGC
ACCAGAACACAGCCTCGCCAGATCCATCGTTTCGTCGTGGACCCAGGTCA
TTGAGAGTAGCGAAAAGGGGGAAGTAAATGATAGAGAAGGTGACATCTCG
CAGTCCTGTGGCACCGATACCCTTGTACAGGCCAAAGATGCCCTTGTCCT
TGATAAGCTGGGAAGCCAATTGGGTGGCCGACACCTTCTCCACCGTCTTT
CCAGCCAATTTGGCCGCCGCCGCCACGCGACCCGCATCCTGCATCTGGAT
CTTGAGAAGCTCCATGGGCGTGGTGACGATAATTTGGAATGCACCGGCCA
GACCGCCGGCAACCATCTGACTGGTCAGCGGAAGTTTGCCATCCTTGGTG
GTCAGCTTGTGGCGGAAGTAATCGTTGGCGGTCAACTTGATGGCCTTCTC
AGGTGTGATTAGCAGGATGTTCACGCCAGAGCCGCGGTACATGCCAAAGT
ATCCTTCGGCCTTGTACGTCTTGCGGAAGCAATCGAACATGCTGTTGTAC
ATGCGTTCGCCATTGGGTCCGATCTGCTGGTTTTGCAG
BS15246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18347-PA | 966 | CG18347-RA | 145..966 | 838..17 | 4085 | 99.8 | Minus |
CG12201-PA | 723 | CG12201-RA | 166..206 | 577..537 | 155 | 95.1 | Minus |
CG12201-PB | 960 | CG12201-RB | 403..443 | 577..537 | 155 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GC1-RB | 1658 | CG18347-RB | 326..1147 | 838..17 | 4095 | 99.9 | Minus |
GC1-RA | 1450 | CG18347-RA | 326..1147 | 838..17 | 4095 | 99.9 | Minus |
Tango9-RB | 3673 | CG10007-RB | 3505..3649 | 17..161 | 725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11970288..11970775 | 788..301 | 2425 | 99.8 | Minus |
3R | 32079331 | 3R | 11971031..11971175 | 161..17 | 725 | 100 | Minus |
3R | 32079331 | 3R | 11970833..11970974 | 303..162 | 710 | 100 | Minus |
3R | 32079331 | 3R | 11972130..11972366 | 758..522 | 285 | 74.7 | Minus |
3R | 32079331 | 3R | 11970180..11970231 | 838..787 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:27:14 has no hits.
BS15246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:10 Download gff for
BS15246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-PA | 145..966 | 17..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:55:57 Download gff for
BS15246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-PA | 145..966 | 17..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:40:12 Download gff for
BS15246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-RA | 326..1150 | 13..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:01 Download gff for
BS15246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GC1-RA | 326..1150 | 13..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:01 Download gff for
BS15246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11970180..11970229 | 789..838 | 100 | -> | Minus |
3R | 11970288..11970773 | 303..788 | 99 | -> | Minus |
3R | 11970834..11970974 | 162..302 | 100 | -> | Minus |
3R | 11971031..11971178 | 13..161 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:40:12 Download gff for
BS15246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7796753..7796900 | 13..161 | 98 | | Minus |
arm_3R | 7795902..7795951 | 789..838 | 100 | -> | Minus |
arm_3R | 7796010..7796495 | 303..788 | 99 | -> | Minus |
arm_3R | 7796556..7796696 | 162..302 | 100 | -> | Minus |
BS15246.complete Sequence
998 bp assembled on 2006-11-01
GenBank Submission: FJ637900
> BS15246.complete
GAAGTTATCAGTCGACATGTCGAGCAGTGCAACCATCGCAACGCCGCTGC
CGCAGCCGCAGCACCAGCAATTCGCCCTGCTGCCGAAGATCATTAACGGC
GGAATTGCGGGAATCATCGGAGTGACATGCGTCTTCCCACTGGACTTGGT
CAAGACGAGGCTGCAAAACCAGCAGATCGGACCCAATGGCGAACGCATGT
ACAACAGCATGTTCGATTGCTTCCGCAAGACGTACAAGGCCGAAGGATAC
TTTGGCATGTACCGCGGCTCTGGCGTGAACATCCTGCTAATCACACCTGA
GAAGGCCATCAAGTTGACCGCCAACGATTACTTCCGCCACAAGCTGACCA
CCAAGGATGGCAAACTTCCGCTGACCAGTCAGATGGTTGCCGGCGGTCTG
GCCGGTGCATTCCAAATTATCGTCACCACGCCCATGGAGCTTCTCAAGAT
CCAGATGCAGGATGCGGGTCGCGTGGCGGCGGCGGCCAAATTGGCTGGAA
AGACGGTGGAGAAGGTGTCGGCCACCCAATTGGCTTCCCAGCTTATCAAG
GACAAGGGCATCTTTGGCCTGTACAAGGGTATCGGTGCCACAGGACTGCG
AGATGTCACCTTCTCTATCATTTACTTCCCCCTTTTCGCTACTCTCAATG
ACCTGGGTCCACGACGAAACGATGGATCTGGCGAGGCTGTGTTCTGGTGC
TCCTTCCTGGCGGGCTTGGCGGCCGGTTCCACCGCTGCCCTCGCAGTTAA
TCCCTTCGACGTGGTCAAGACGCGTCTGCAGGCGATTAAGAAGGCCGACG
GTGAGAAGGAGTTCAAGGGCATATCAGATTGTATCACTAAGACACTGAAG
CACGAGGGACCCACCGCCTTCTTCAAGGGCGGCCTGTGCCGAATGATTGT
GATTGCTCCTCTGTTCGGAATCGCTCAAACGGTCTACTATCTGGGCGTGG
CCGAGGGCCTGCTGGGCTATCAGAAAAAGTAGAAGCTTTCTAGACCAT
BS15246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GC1-RB | 966 | CG18347-PB | 1..966 | 17..982 | 4815 | 99.9 | Plus |
GC1-RA | 966 | CG18347-PA | 1..966 | 17..982 | 4815 | 99.9 | Plus |
GC2-RB | 960 | CG12201-PB | 64..458 | 83..477 | 460 | 74.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GC1-RB | 1658 | CG18347-RB | 182..1147 | 17..982 | 4815 | 99.9 | Plus |
GC1-RA | 1450 | CG18347-RA | 182..1147 | 17..982 | 4815 | 99.9 | Plus |
Tango9-RB | 3673 | CG10007-RB | 3505..3649 | 982..838 | 725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11970288..11970775 | 211..698 | 2425 | 99.8 | Plus |
3R | 32079331 | 3R | 11971031..11971175 | 838..982 | 725 | 100 | Plus |
3R | 32079331 | 3R | 11970833..11970974 | 696..837 | 710 | 100 | Plus |
3R | 32079331 | 3R | 11970095..11970231 | 76..212 | 685 | 100 | Plus |
3R | 32079331 | 3R | 11969218..11969276 | 17..75 | 295 | 100 | Plus |
3R | 32079331 | 3R | 11972130..11972366 | 241..477 | 285 | 74.7 | Plus |
3R | 32079331 | 3R | 11971901..11972030 | 83..212 | 245 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:37:25 has no hits.
BS15246.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:25 Download gff for
BS15246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-RA | 1..966 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:05 Download gff for
BS15246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-RA | 152..1129 | 10..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:20:57 Download gff for
BS15246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-RA | 182..1147 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:26 Download gff for
BS15246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-RA | 152..1129 | 10..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:38 Download gff for
BS15246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GC1-RA | 182..1147 | 17..982 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:38 Download gff for
BS15246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11971031..11971175 | 838..982 | 100 | | Plus |
3R | 11970095..11970229 | 76..210 | 100 | -> | Plus |
3R | 11969218..11969276 | 17..75 | 100 | -> | Plus |
3R | 11970288..11970773 | 211..696 | 99 | -> | Plus |
3R | 11970834..11970974 | 697..837 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:20:57 Download gff for
BS15246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7794940..7794998 | 17..75 | 100 | -> | Plus |
arm_3R | 7795817..7795951 | 76..210 | 100 | -> | Plus |
arm_3R | 7796010..7796495 | 211..696 | 99 | -> | Plus |
arm_3R | 7796556..7796696 | 697..837 | 100 | -> | Plus |
arm_3R | 7796753..7796897 | 838..982 | 100 | | Plus |
BS15246.pep Sequence
Translation from 16 to 981
> BS15246.pep
MSSSATIATPLPQPQHQQFALLPKIINGGIAGIIGVTCVFPLDLVKTRLQ
NQQIGPNGERMYNSMFDCFRKTYKAEGYFGMYRGSGVNILLITPEKAIKL
TANDYFRHKLTTKDGKLPLTSQMVAGGLAGAFQIIVTTPMELLKIQMQDA
GRVAAAAKLAGKTVEKVSATQLASQLIKDKGIFGLYKGIGATGLRDVTFS
IIYFPLFATLNDLGPRRNDGSGEAVFWCSFLAGLAAGSTAALAVNPFDVV
KTRLQAIKKADGEKEFKGISDCITKTLKHEGPTAFFKGGLCRMIVIAPLF
GIAQTVYYLGVAEGLLGYQKK*
BS15246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GC1-PB | 321 | CG18347-PB | 1..321 | 1..321 | 1642 | 100 | Plus |
GC1-PA | 321 | CG18347-PA | 1..321 | 1..321 | 1642 | 100 | Plus |
GC2-PB | 319 | CG12201-PB | 12..315 | 13..320 | 1112 | 67.9 | Plus |
GC2-PD | 240 | CG12201-PD | 1..236 | 81..320 | 837 | 66.2 | Plus |
aralar1-PB | 679 | CG2139-PB | 333..599 | 28..309 | 544 | 41.7 | Plus |