Clone BS15252 Report

Search the DGRC for BS15252

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptRpt6R-RA
Protein status:BS15252.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15252.3prime Sequence

792 bp (780 high quality bases) assembled on 2006-10-24

> BS15252.3prime
ATGGTCTAGAAAGCTTCTATTTCCAGAACTTTCTGATGGACATGTTCTTC
TCGGAGTCCTTCATCATTACCTTGGAGACGGCCATTTCAAAGTCCTCCTG
GGTGACATGGACCCGTCTTTCCCTCAGAGCATACATTCCCGCCTCGGTGC
AAACACCCTTGACTTCAGCACCAGAAGCCCCCGGCATTTCTTCAGCAATC
TTGCGAAGATTGATGCCTCTGGTGAGGTTCATCTTGCGAGAATGTATCTT
CAGGATATCCAATCTGGCCTCTTCGTTTGGTGGCGGAAACTCGATCTTGC
GGTCAATTCGACCAGGACGCAGTAATGCCTGATCCAAGACATCGATGCGA
TTGGTGGCCATGATCACCTTAATGTTTTTAGTAGCCTCGAAGCCGTCCAG
TTGGTTCAGAAGCTCCAGCATGGTTCGCTGGACCTCCGAATCCCCCGTTC
CGGTTTCCAGTCGAGCGGAACCAATCGAGTCGATCTCGTCCATGAATATT
ATGGATGGAGCGTGTTCCCTAGCCATCACAAAAAGCTCCCTTACCATTCT
CGAACCCTCGCCGATGAATTTCTGAACCAGTTCCGACCCTGAAACCCGTA
TAAAAGTGCACTCCGTGTGATGGGCTACAGCTCGGGCTAACAGGGTTTTC
CCAGTTCCAGGCGGTCCGTAGAGGAGCACTCCCTTTGGCTGGGTAATGCC
CAAGGCGTCAAATAATTCCGGATGCTTTACAGGCAGCTCAATCACCTCCT
TGATCTCCTGGATCTGCTTGTCCAAGCCACCCACCATTTCGT

BS15252.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2241-PA 1200 CG2241-RA 425..1200 792..17 3880 100 Minus
CG1489-PA 1218 Pros45-RA 793..890 442..345 190 87.7 Minus
CG1489-PA 1218 Pros45-RA 475..512 757..720 140 94.7 Minus
CG1489-PA 1218 Pros45-RA 1063..1145 172..90 140 86.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt6R-RA 1445 CG2241-RA 599..1374 792..17 3880 100 Minus
Rpt6-RA 1404 CG1489-RA 566..1344 792..17 1555 80.2 Minus
CG1801-RC 5303 CG1801-RC 1..182 98..279 370 80.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30582269..30583044 17..792 3880 100 Plus
X 23542271 X 21316825..21317603 792..17 1520 80 Minus
3R 32079331 3R 9755217..9755305 348..436 205 82 Plus
3R 32079331 3R 23754014..23754184 436..266 195 74.3 Minus
3R 32079331 3R 23930206..23930293 283..370 185 80.7 Plus
Blast to na_te.dros performed on 2015-02-10 16:27:26 has no hits.

BS15252.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:26 Download gff for BS15252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2241-PA 425..1200 17..792 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:15 Download gff for BS15252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2241-PA 425..1200 17..792 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:40:14 Download gff for BS15252.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt6R-RA 599..1377 11..792 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:03 Download gff for BS15252.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt6R-RA 599..1377 11..792 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:03 Download gff for BS15252.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30582266..30583044 11..792 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:40:14 Download gff for BS15252.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26407988..26408766 11..792 99   Plus

BS15252.5prime Sequence

873 bp (773 high quality bases) assembled on 2006-10-24

> BS15252.5prime
GAAGTTATCAGTCGACATGAGCAAAGACGTAGGAATCCCAGAGGGTTCCG
AAGGCTTTCATTCATATTATACGCAGAAAATATCAGAGCTTCAGTTCACT
GTGAACGAACGCCAAAAGAACTTGCTCCGTTTGCAGGCTCAGAGAAATGA
ACTCAACCTCAAGGTTCGCTTGCTGCGCGAGGAGCTGCAGTTGCTCCAGG
AGCAGGGGAGCTATATTGCGGAGGTTGTGAAGCCCATGGACAAGAATAAG
GTCCTTGTGAAGGTTCATCCCGAGGGCAAGTATGTAGTGGATGTGGACAA
GACCATCAATATTAAGGATGTGACACCCAGCAGCAGGGTGGCCCTGCGAA
ACGAGAGCTACACGCTTCACAAAATTCTGCCCAATAAGGTGGACCCATTA
GTATCCCTTATGTTGGTGGAAAAGGTGCCCGACTCCACCTACGAAATGGT
GGGTGGCTTGGACAAGCAGATCCAGGAGATCAAGGAGGTGATTGAGCTGC
CTGTAAAGCATCCGGAATTATTTGACGCCTTGGGCATTACCCAGCCAAAG
GGAGTGCTCCTCTACGGACCGCCTGGAACTGGGAAAACCCTGTTAGCCCG
AGCTGTAGCCCATCACACGGAGTGCACTTTTATACGGGTTTCAGGGTCGG
AACTGGTTCAGAAATTCATCGGCGAGGGTTCGAGAATGGTAAGGGAGCTT
TTTGTGATGGCTAGGGAACACGCTCCATCCATAATATTCATGGACGAGAT
CGACTCGATTGGTTCCGCTCGACTGGAAACCGGAACGGGGGATTCGGAGG
TCCAGCGAACCATGCTGGAGCTTCTGAACCACTGGACGGCTTCGAGGCTA
CTAAAAACATTAAGGTGATCATG

BS15252.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2241-PA 1200 CG2241-RA 1..815 17..831 4075 100 Plus
CG2241-PA 1200 CG2241-RA 816..858 831..873 215 100 Plus
CG1489-PA 1218 Pros45-RA 337..392 338..393 155 91 Plus
CG1489-PA 1218 Pros45-RA 475..512 476..513 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt6R-RA 1445 CG2241-RA 175..1032 17..873 4265 99.9 Plus
Rpt6-RA 1404 CG1489-RA 257..1002 132..873 1440 80.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30582611..30583321 873..164 3505 99.9 Minus
X 23542271 X 21316548..21317261 164..873 1355 80 Plus
3R 32079331 3R 30583376..30583523 164..17 740 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:39:49 has no hits.

BS15252.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:27 Download gff for BS15252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2241-PA 1..858 17..873 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:17 Download gff for BS15252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2241-PA 1..858 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:29 Download gff for BS15252.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt6R-RA 175..1032 17..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:53 Download gff for BS15252.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt6R-RA 175..1032 17..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:53 Download gff for BS15252.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30582611..30583320 165..873 99 <- Minus
3R 30583376..30583523 17..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:29 Download gff for BS15252.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26408333..26409042 165..873 99 <- Minus
arm_3R 26409098..26409245 17..164 100   Minus

BS15252.complete Sequence

1232 bp assembled on 2006-11-01

GenBank Submission: FJ637902

> BS15252.complete
GAAGTTATCAGTCGACATGAGCAAAGACGTAGGAATCCCAGAGGGTTCCG
AAGGCTTTCATTCATATTATACGCAGAAAATATCAGAGCTTCAGTTCACT
GTGAACGAACGCCAAAAGAACTTGCTCCGTTTGCAGGCTCAGAGAAATGA
ACTCAACCTCAAGGTTCGCTTGCTGCGCGAGGAGCTGCAGTTGCTCCAGG
AGCAGGGGAGCTATATTGCGGAGGTTGTGAAGCCCATGGACAAGAATAAG
GTCCTTGTGAAGGTTCATCCCGAGGGCAAGTATGTAGTGGATGTGGACAA
GACCATCAATATTAAGGATGTGACACCCAGCAGCAGGGTGGCCCTGCGAA
ACGAGAGCTACACGCTTCACAAAATTCTGCCCAATAAGGTGGACCCATTA
GTATCCCTTATGTTGGTGGAAAAGGTGCCCGACTCCACCTACGAAATGGT
GGGTGGCTTGGACAAGCAGATCCAGGAGATCAAGGAGGTGATTGAGCTGC
CTGTAAAGCATCCGGAATTATTTGACGCCTTGGGCATTACCCAGCCAAAG
GGAGTGCTCCTCTACGGACCGCCTGGAACTGGGAAAACCCTGTTAGCCCG
AGCTGTAGCCCATCACACGGAGTGCACTTTTATACGGGTTTCAGGGTCGG
AACTGGTTCAGAAATTCATCGGCGAGGGTTCGAGAATGGTAAGGGAGCTT
TTTGTGATGGCTAGGGAACACGCTCCATCCATAATATTCATGGACGAGAT
CGACTCGATTGGTTCCGCTCGACTGGAAACCGGAACGGGGGATTCGGAGG
TCCAGCGAACCATGCTGGAGCTTCTGAACCAACTGGACGGCTTCGAGGCT
ACTAAAAACATTAAGGTGATCATGGCCACCAATCGCATCGATGTCTTGGA
TCAGGCATTACTGCGTCCTGGTCGAATTGACCGCAAGATCGAGTTTCCGC
CACCAAACGAAGAGGCCAGATTGGATATCCTGAAGATACATTCTCGCAAG
ATGAACCTCACCAGAGGCATCAATCTTCGCAAGATTGCTGAAGAAATGCC
GGGGGCTTCTGGTGCTGAAGTCAAGGGTGTTTGCACCGAGGCGGGAATGT
ATGCTCTGAGGGAAAGACGGGTCCATGTCACCCAGGAGGACTTTGAAATG
GCCGTCTCCAAGGTAATGATGAAGGACTCCGAGAAGAACATGTCCATCAG
AAAGTTCTGGAAATAGAAGCTTTCTAGACCAT

BS15252.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt6R-RA 1200 CG2241-PA 1..1200 17..1216 6000 100 Plus
Rpt6-RA 1218 CG1489-PA 131..1218 132..1216 2150 80.1 Plus
Rpt3R-RD 1218 CG9475-PD 811..899 797..885 205 82 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt6R-RA 1445 CG2241-RA 175..1374 17..1216 6000 100 Plus
Rpt6-RA 1404 CG1489-RA 257..1344 132..1216 2150 80.1 Plus
CG1801-RC 5303 CG1801-RC 1..182 1135..954 370 80.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30582269..30583321 1216..164 5265 100 Minus
X 23542271 X 21316548..21317603 164..1216 2125 80.3 Plus
3R 32079331 3R 30583376..30583523 164..17 740 100 Minus
3R 32079331 3R 9755217..9755305 885..797 205 82 Minus
3R 32079331 3R 23754014..23754184 797..967 195 74.3 Plus
3R 32079331 3R 23930206..23930293 950..863 185 80.7 Minus
Blast to na_te.dros performed on 2014-11-27 08:39:02 has no hits.

BS15252.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:10 Download gff for BS15252.complete
Subject Subject Range Query Range Percent Splice Strand
CG2241-RA 1..1200 17..1216 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:48 Download gff for BS15252.complete
Subject Subject Range Query Range Percent Splice Strand
CG2241-RA 153..1355 17..1222 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:32 Download gff for BS15252.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt6R-RA 175..1368 17..1210 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:11 Download gff for BS15252.complete
Subject Subject Range Query Range Percent Splice Strand
CG2241-RA 153..1355 17..1222 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:00 Download gff for BS15252.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt6R-RA 175..1368 17..1210 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:00 Download gff for BS15252.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30582275..30583320 165..1210 100 <- Minus
3R 30583376..30583523 17..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:32 Download gff for BS15252.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26407997..26409042 165..1210 100 <- Minus
arm_3R 26409098..26409245 17..164 100   Minus

BS15252.pep Sequence

Translation from 16 to 1215

> BS15252.pep
MSKDVGIPEGSEGFHSYYTQKISELQFTVNERQKNLLRLQAQRNELNLKV
RLLREELQLLQEQGSYIAEVVKPMDKNKVLVKVHPEGKYVVDVDKTINIK
DVTPSSRVALRNESYTLHKILPNKVDPLVSLMLVEKVPDSTYEMVGGLDK
QIQEIKEVIELPVKHPELFDALGITQPKGVLLYGPPGTGKTLLARAVAHH
TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS
ARLETGTGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDVLDQALLR
PGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEEMPGASGA
EVKGVCTEAGMYALRERRVHVTQEDFEMAVSKVMMKDSEKNMSIRKFWK*

BS15252.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt6R-PA 399 CG2241-PA 1..399 1..399 2014 100 Plus
Rpt6-PA 405 CG1489-PA 17..405 12..399 1787 90.5 Plus
Rpt1-PA 433 CG1341-PA 80..417 53..384 859 52.7 Plus
Rpt2-PB 439 CG5289-PB 65..431 20..389 856 46.1 Plus
Rpt2-PA 439 CG5289-PA 65..431 20..389 856 46.1 Plus