Clone Sequence Records
BS15252.3prime Sequence
792 bp (780 high quality bases) assembled on 2006-10-24
> BS15252.3prime
ATGGTCTAGAAAGCTTCTATTTCCAGAACTTTCTGATGGACATGTTCTTC
TCGGAGTCCTTCATCATTACCTTGGAGACGGCCATTTCAAAGTCCTCCTG
GGTGACATGGACCCGTCTTTCCCTCAGAGCATACATTCCCGCCTCGGTGC
AAACACCCTTGACTTCAGCACCAGAAGCCCCCGGCATTTCTTCAGCAATC
TTGCGAAGATTGATGCCTCTGGTGAGGTTCATCTTGCGAGAATGTATCTT
CAGGATATCCAATCTGGCCTCTTCGTTTGGTGGCGGAAACTCGATCTTGC
GGTCAATTCGACCAGGACGCAGTAATGCCTGATCCAAGACATCGATGCGA
TTGGTGGCCATGATCACCTTAATGTTTTTAGTAGCCTCGAAGCCGTCCAG
TTGGTTCAGAAGCTCCAGCATGGTTCGCTGGACCTCCGAATCCCCCGTTC
CGGTTTCCAGTCGAGCGGAACCAATCGAGTCGATCTCGTCCATGAATATT
ATGGATGGAGCGTGTTCCCTAGCCATCACAAAAAGCTCCCTTACCATTCT
CGAACCCTCGCCGATGAATTTCTGAACCAGTTCCGACCCTGAAACCCGTA
TAAAAGTGCACTCCGTGTGATGGGCTACAGCTCGGGCTAACAGGGTTTTC
CCAGTTCCAGGCGGTCCGTAGAGGAGCACTCCCTTTGGCTGGGTAATGCC
CAAGGCGTCAAATAATTCCGGATGCTTTACAGGCAGCTCAATCACCTCCT
TGATCTCCTGGATCTGCTTGTCCAAGCCACCCACCATTTCGT
BS15252.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2241-PA | 1200 | CG2241-RA | 425..1200 | 792..17 | 3880 | 100 | Minus |
CG1489-PA | 1218 | Pros45-RA | 793..890 | 442..345 | 190 | 87.7 | Minus |
CG1489-PA | 1218 | Pros45-RA | 475..512 | 757..720 | 140 | 94.7 | Minus |
CG1489-PA | 1218 | Pros45-RA | 1063..1145 | 172..90 | 140 | 86.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt6R-RA | 1445 | CG2241-RA | 599..1374 | 792..17 | 3880 | 100 | Minus |
Rpt6-RA | 1404 | CG1489-RA | 566..1344 | 792..17 | 1555 | 80.2 | Minus |
CG1801-RC | 5303 | CG1801-RC | 1..182 | 98..279 | 370 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30582269..30583044 | 17..792 | 3880 | 100 | Plus |
X | 23542271 | X | 21316825..21317603 | 792..17 | 1520 | 80 | Minus |
3R | 32079331 | 3R | 9755217..9755305 | 348..436 | 205 | 82 | Plus |
3R | 32079331 | 3R | 23754014..23754184 | 436..266 | 195 | 74.3 | Minus |
3R | 32079331 | 3R | 23930206..23930293 | 283..370 | 185 | 80.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:27:26 has no hits.
BS15252.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:26 Download gff for
BS15252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2241-PA | 425..1200 | 17..792 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:15 Download gff for
BS15252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2241-PA | 425..1200 | 17..792 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:40:14 Download gff for
BS15252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6R-RA | 599..1377 | 11..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:03 Download gff for
BS15252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6R-RA | 599..1377 | 11..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:03 Download gff for
BS15252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30582266..30583044 | 11..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:40:14 Download gff for
BS15252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26407988..26408766 | 11..792 | 99 | | Plus |
BS15252.5prime Sequence
873 bp (773 high quality bases) assembled on 2006-10-24
> BS15252.5prime
GAAGTTATCAGTCGACATGAGCAAAGACGTAGGAATCCCAGAGGGTTCCG
AAGGCTTTCATTCATATTATACGCAGAAAATATCAGAGCTTCAGTTCACT
GTGAACGAACGCCAAAAGAACTTGCTCCGTTTGCAGGCTCAGAGAAATGA
ACTCAACCTCAAGGTTCGCTTGCTGCGCGAGGAGCTGCAGTTGCTCCAGG
AGCAGGGGAGCTATATTGCGGAGGTTGTGAAGCCCATGGACAAGAATAAG
GTCCTTGTGAAGGTTCATCCCGAGGGCAAGTATGTAGTGGATGTGGACAA
GACCATCAATATTAAGGATGTGACACCCAGCAGCAGGGTGGCCCTGCGAA
ACGAGAGCTACACGCTTCACAAAATTCTGCCCAATAAGGTGGACCCATTA
GTATCCCTTATGTTGGTGGAAAAGGTGCCCGACTCCACCTACGAAATGGT
GGGTGGCTTGGACAAGCAGATCCAGGAGATCAAGGAGGTGATTGAGCTGC
CTGTAAAGCATCCGGAATTATTTGACGCCTTGGGCATTACCCAGCCAAAG
GGAGTGCTCCTCTACGGACCGCCTGGAACTGGGAAAACCCTGTTAGCCCG
AGCTGTAGCCCATCACACGGAGTGCACTTTTATACGGGTTTCAGGGTCGG
AACTGGTTCAGAAATTCATCGGCGAGGGTTCGAGAATGGTAAGGGAGCTT
TTTGTGATGGCTAGGGAACACGCTCCATCCATAATATTCATGGACGAGAT
CGACTCGATTGGTTCCGCTCGACTGGAAACCGGAACGGGGGATTCGGAGG
TCCAGCGAACCATGCTGGAGCTTCTGAACCACTGGACGGCTTCGAGGCTA
CTAAAAACATTAAGGTGATCATG
BS15252.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2241-PA | 1200 | CG2241-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
CG2241-PA | 1200 | CG2241-RA | 816..858 | 831..873 | 215 | 100 | Plus |
CG1489-PA | 1218 | Pros45-RA | 337..392 | 338..393 | 155 | 91 | Plus |
CG1489-PA | 1218 | Pros45-RA | 475..512 | 476..513 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt6R-RA | 1445 | CG2241-RA | 175..1032 | 17..873 | 4265 | 99.9 | Plus |
Rpt6-RA | 1404 | CG1489-RA | 257..1002 | 132..873 | 1440 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30582611..30583321 | 873..164 | 3505 | 99.9 | Minus |
X | 23542271 | X | 21316548..21317261 | 164..873 | 1355 | 80 | Plus |
3R | 32079331 | 3R | 30583376..30583523 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:39:49 has no hits.
BS15252.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:27 Download gff for
BS15252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2241-PA | 1..858 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:17 Download gff for
BS15252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2241-PA | 1..858 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:29 Download gff for
BS15252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6R-RA | 175..1032 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:53 Download gff for
BS15252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6R-RA | 175..1032 | 17..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:53 Download gff for
BS15252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30582611..30583320 | 165..873 | 99 | <- | Minus |
3R | 30583376..30583523 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:29 Download gff for
BS15252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26408333..26409042 | 165..873 | 99 | <- | Minus |
arm_3R | 26409098..26409245 | 17..164 | 100 | | Minus |
BS15252.complete Sequence
1232 bp assembled on 2006-11-01
GenBank Submission: FJ637902
> BS15252.complete
GAAGTTATCAGTCGACATGAGCAAAGACGTAGGAATCCCAGAGGGTTCCG
AAGGCTTTCATTCATATTATACGCAGAAAATATCAGAGCTTCAGTTCACT
GTGAACGAACGCCAAAAGAACTTGCTCCGTTTGCAGGCTCAGAGAAATGA
ACTCAACCTCAAGGTTCGCTTGCTGCGCGAGGAGCTGCAGTTGCTCCAGG
AGCAGGGGAGCTATATTGCGGAGGTTGTGAAGCCCATGGACAAGAATAAG
GTCCTTGTGAAGGTTCATCCCGAGGGCAAGTATGTAGTGGATGTGGACAA
GACCATCAATATTAAGGATGTGACACCCAGCAGCAGGGTGGCCCTGCGAA
ACGAGAGCTACACGCTTCACAAAATTCTGCCCAATAAGGTGGACCCATTA
GTATCCCTTATGTTGGTGGAAAAGGTGCCCGACTCCACCTACGAAATGGT
GGGTGGCTTGGACAAGCAGATCCAGGAGATCAAGGAGGTGATTGAGCTGC
CTGTAAAGCATCCGGAATTATTTGACGCCTTGGGCATTACCCAGCCAAAG
GGAGTGCTCCTCTACGGACCGCCTGGAACTGGGAAAACCCTGTTAGCCCG
AGCTGTAGCCCATCACACGGAGTGCACTTTTATACGGGTTTCAGGGTCGG
AACTGGTTCAGAAATTCATCGGCGAGGGTTCGAGAATGGTAAGGGAGCTT
TTTGTGATGGCTAGGGAACACGCTCCATCCATAATATTCATGGACGAGAT
CGACTCGATTGGTTCCGCTCGACTGGAAACCGGAACGGGGGATTCGGAGG
TCCAGCGAACCATGCTGGAGCTTCTGAACCAACTGGACGGCTTCGAGGCT
ACTAAAAACATTAAGGTGATCATGGCCACCAATCGCATCGATGTCTTGGA
TCAGGCATTACTGCGTCCTGGTCGAATTGACCGCAAGATCGAGTTTCCGC
CACCAAACGAAGAGGCCAGATTGGATATCCTGAAGATACATTCTCGCAAG
ATGAACCTCACCAGAGGCATCAATCTTCGCAAGATTGCTGAAGAAATGCC
GGGGGCTTCTGGTGCTGAAGTCAAGGGTGTTTGCACCGAGGCGGGAATGT
ATGCTCTGAGGGAAAGACGGGTCCATGTCACCCAGGAGGACTTTGAAATG
GCCGTCTCCAAGGTAATGATGAAGGACTCCGAGAAGAACATGTCCATCAG
AAAGTTCTGGAAATAGAAGCTTTCTAGACCAT
BS15252.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt6R-RA | 1200 | CG2241-PA | 1..1200 | 17..1216 | 6000 | 100 | Plus |
Rpt6-RA | 1218 | CG1489-PA | 131..1218 | 132..1216 | 2150 | 80.1 | Plus |
Rpt3R-RD | 1218 | CG9475-PD | 811..899 | 797..885 | 205 | 82 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt6R-RA | 1445 | CG2241-RA | 175..1374 | 17..1216 | 6000 | 100 | Plus |
Rpt6-RA | 1404 | CG1489-RA | 257..1344 | 132..1216 | 2150 | 80.1 | Plus |
CG1801-RC | 5303 | CG1801-RC | 1..182 | 1135..954 | 370 | 80.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30582269..30583321 | 1216..164 | 5265 | 100 | Minus |
X | 23542271 | X | 21316548..21317603 | 164..1216 | 2125 | 80.3 | Plus |
3R | 32079331 | 3R | 30583376..30583523 | 164..17 | 740 | 100 | Minus |
3R | 32079331 | 3R | 9755217..9755305 | 885..797 | 205 | 82 | Minus |
3R | 32079331 | 3R | 23754014..23754184 | 797..967 | 195 | 74.3 | Plus |
3R | 32079331 | 3R | 23930206..23930293 | 950..863 | 185 | 80.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:39:02 has no hits.
BS15252.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:10 Download gff for
BS15252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2241-RA | 1..1200 | 17..1216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:48 Download gff for
BS15252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2241-RA | 153..1355 | 17..1222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:32 Download gff for
BS15252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6R-RA | 175..1368 | 17..1210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:11 Download gff for
BS15252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2241-RA | 153..1355 | 17..1222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:00 Download gff for
BS15252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6R-RA | 175..1368 | 17..1210 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:00 Download gff for
BS15252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30582275..30583320 | 165..1210 | 100 | <- | Minus |
3R | 30583376..30583523 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:32 Download gff for
BS15252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26407997..26409042 | 165..1210 | 100 | <- | Minus |
arm_3R | 26409098..26409245 | 17..164 | 100 | | Minus |
BS15252.pep Sequence
Translation from 16 to 1215
> BS15252.pep
MSKDVGIPEGSEGFHSYYTQKISELQFTVNERQKNLLRLQAQRNELNLKV
RLLREELQLLQEQGSYIAEVVKPMDKNKVLVKVHPEGKYVVDVDKTINIK
DVTPSSRVALRNESYTLHKILPNKVDPLVSLMLVEKVPDSTYEMVGGLDK
QIQEIKEVIELPVKHPELFDALGITQPKGVLLYGPPGTGKTLLARAVAHH
TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS
ARLETGTGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDVLDQALLR
PGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEEMPGASGA
EVKGVCTEAGMYALRERRVHVTQEDFEMAVSKVMMKDSEKNMSIRKFWK*
BS15252.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt6R-PA | 399 | CG2241-PA | 1..399 | 1..399 | 2014 | 100 | Plus |
Rpt6-PA | 405 | CG1489-PA | 17..405 | 12..399 | 1787 | 90.5 | Plus |
Rpt1-PA | 433 | CG1341-PA | 80..417 | 53..384 | 859 | 52.7 | Plus |
Rpt2-PB | 439 | CG5289-PB | 65..431 | 20..389 | 856 | 46.1 | Plus |
Rpt2-PA | 439 | CG5289-PA | 65..431 | 20..389 | 856 | 46.1 | Plus |