Clone Sequence Records
BS15254.3prime Sequence
533 bp (533 high quality bases) assembled on 2006-10-24
> BS15254.3prime
ATGGTCTAGAAAGCTTTTCCTTCAAGCCTCGTTCATGGGAAATCGCTGAG
TATTGTTAACCCACTCGTTCTGCAACTCTAAACGTTCTCCGTTCCATTGG
AAATGTGTGGGGGAAGCCTCGCCAGCGAGAAACTCAAAGTGCTGGCTGAG
CTCGATGGCCAGTTTGGAGCGGACTAGGCCTATTCCGCCCACCTGTGGCG
CAGCTGGATGATAGACCCTTCCGTTTCGCGGATCCATGTACAGTTTGTGG
GGTTCGTAAGGCAGGGTAAGGACCTGTCCCGCGTGTGCATAGCTGAGCAC
CTCCGTATCGTCCTTCCTCAGCTGTTCAGTAAACACAACAGGTGTGTCAT
CGCACCTAATAAAATTCCTTTCGCGGCCACAGAGGGAAATGTATGGAAAT
TCGCTTTCATATCTGCTCGTTTTGTTTAGCCGCAGTCGGTTGAAAAAGAA
CTTGAGGAAATCCTTCTCCTTAAAGCAGCTGGTGAAGTTTTTCATCTTTG
CATCGTCCAGGAAGAGCATGTCGACTGATAACT
BS15254.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30010-PA | 504 | CG30010-RA | 1..493 | 519..27 | 2465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:56:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30010-RB | 873 | CG30010-RB | 311..807 | 519..23 | 2470 | 99.8 | Minus |
| CG30010-RA | 704 | CG30010-RA | 142..638 | 519..23 | 2470 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9864016..9864510 | 517..23 | 2460 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:56:35 has no hits.
BS15254.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:30 Download gff for
BS15254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30010-PA | 1..504 | 17..519 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:21 Download gff for
BS15254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30010-PA | 1..504 | 17..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:30:30 Download gff for
BS15254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30010-RA | 134..642 | 17..529 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:53:41 Download gff for
BS15254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30010-RA | 134..642 | 17..529 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:53:41 Download gff for
BS15254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9864014..9864514 | 17..520 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:30:30 Download gff for
BS15254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5751519..5752019 | 17..520 | 99 | | Minus |
BS15254.5prime Sequence
534 bp (534 high quality bases) assembled on 2006-10-24
> BS15254.5prime
GAAGTTATCAGTCGACATGCTCTTCCTGGACGATGCAAAGATGAAAAACT
TCACCAGCTGCTTTAAGGAGAAGGATTTCCTCAAGTTCTTTTTCAACCGA
CTGCGGCTAAACAAAACGAGCAGATATGAAAGCGAATTTCCATACATTTC
CCTCTGTGGCCGCGAAAGGAATTTTATTAGGTGCGATGACACACCTGTTG
TGTTTACTGAACAGCTGAGGAAGGACGATACGGAGGTGCTCAGCTATGCA
CACGCGGGACAGGTCCTTACCCTGCCTTACGAACCCCACAAACTGTACAT
GGATCCGCGAAACGGAAGGGTCTATCATCCAGCTGCGCCACAGGTGGGCG
GAATAGGCCTAGTCCGCTCCAAACTGGCCATCGAGCTCAGCCAGCACTTT
GAGTTTCTCGCTGGCGAGGCTTCCCCCACACATTTCCAATGGAACGGAGA
ACGTTTAGAGTTGCAGAACGAGTGGGTTAACAATACTCAGCGATTTCCCA
TGAACGAGGATTGTAAATAAAAGCTTTCTAGACC
BS15254.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30010-PA | 504 | CG30010-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30010-RB | 873 | CG30010-RB | 311..814 | 17..520 | 2520 | 100 | Plus |
| CG30010-RA | 704 | CG30010-RA | 142..645 | 17..520 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9864016..9864517 | 19..520 | 2510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:38:15 has no hits.
BS15254.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:31 Download gff for
BS15254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30010-PA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:22 Download gff for
BS15254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30010-PA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:23:47 Download gff for
BS15254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30010-RA | 134..645 | 7..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:44 Download gff for
BS15254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30010-RA | 134..645 | 7..520 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:44 Download gff for
BS15254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9864014..9864517 | 16..520 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:23:47 Download gff for
BS15254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5751519..5752022 | 16..520 | 99 | | Plus |
BS15254.complete Sequence
536 bp assembled on 2006-11-01
GenBank Submission: FJ637903
> BS15254.complete
GAAGTTATCAGTCGACATGCTCTTCCTGGACGATGCAAAGATGAAAAACT
TCACCAGCTGCTTTAAGGAGAAGGATTTCCTCAAGTTCTTTTTCAACCGA
CTGCGGCTAAACAAAACGAGCAGATATGAAAGCGAATTTCCATACATTTC
CCTCTGTGGCCGCGAAAGGAATTTTATTAGGTGCGATGACACACCTGTTG
TGTTTACTGAACAGCTGAGGAAGGACGATACGGAGGTGCTCAGCTATGCA
CACGCGGGACAGGTCCTTACCCTGCCTTACGAACCCCACAAACTGTACAT
GGATCCGCGAAACGGAAGGGTCTATCATCCAGCTGCGCCACAGGTGGGCG
GAATAGGCCTAGTCCGCTCCAAACTGGCCATCGAGCTCAGCCAGCACTTT
GAGTTTCTCGCTGGCGAGGCTTCCCCCACACATTTCCAATGGAACGGAGA
ACGTTTAGAGTTGCAGAACGAGTGGGTTAACAATACTCAGCGATTTCCCA
TGAACGAGGATTGTAAATAAAAGCTTTCTAGACCAT
BS15254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30010-RB | 504 | CG30010-PB | 1..504 | 17..520 | 2520 | 100 | Plus |
| CG30010-RA | 504 | CG30010-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30010-RB | 873 | CG30010-RB | 311..814 | 17..520 | 2520 | 100 | Plus |
| CG30010-RA | 704 | CG30010-RA | 142..645 | 17..520 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9864016..9864517 | 19..520 | 2510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:46:26 has no hits.
BS15254.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:12 Download gff for
BS15254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30010-RA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:50 Download gff for
BS15254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30010-RA | 134..645 | 7..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:08 Download gff for
BS15254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30010-RA | 142..643 | 17..518 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:12 Download gff for
BS15254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30010-RA | 134..645 | 7..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:30 Download gff for
BS15254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30010-RA | 142..643 | 17..518 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:30 Download gff for
BS15254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9864015..9864515 | 17..518 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:08 Download gff for
BS15254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5751520..5752020 | 17..518 | 99 | | Plus |
BS15254.pep Sequence
Translation from 16 to 519
> BS15254.pep
MLFLDDAKMKNFTSCFKEKDFLKFFFNRLRLNKTSRYESEFPYISLCGRE
RNFIRCDDTPVVFTEQLRKDDTEVLSYAHAGQVLTLPYEPHKLYMDPRNG
RVYHPAAPQVGGIGLVRSKLAIELSQHFEFLAGEASPTHFQWNGERLELQ
NEWVNNTQRFPMNEDCK*
BS15254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30010-PB | 167 | CG30010-PB | 1..167 | 1..167 | 904 | 100 | Plus |
| CG30010-PA | 167 | CG30010-PA | 1..167 | 1..167 | 904 | 100 | Plus |
