Clone Sequence Records
BS15256.complete Sequence
1949 bp assembled on 2009-12-07
GenBank Submission: KX805864
> BS15256.complete
GAAGTTATCAGTCGACATGTGGCAGCTGGTCATCAACATGGTGGACATAA
ACTTGGAGTGCGTGCACCAGATCGAACCGAAGACCCGTTCTGCTGGTCAG
CAGCAGCAGGAGCGAGGGTTAAAGGAAGCCTACCTGGAAGCGGTCCGCAT
TCTGTTAGTGCTGCTGGAGAACATCTTGGCGCAGCCGGAGAACTCCATGT
TCCGCACCATACGGCAGGAAAACAAAGCTATTAAAGAAAAGCTGCTGTCC
TTGCCCGGCTGTGAGAGGTTACTGGAAGCCATAGGCTTCGTACGCGCCCC
CAGTTCCAACGCCTACACCTTGCCCACAGAGGTGTCACTGCAGCAGGTGA
AGAAGTACAGAGATGCGCTGAGCGAGAGACGCACTGCCTGGCTTAACGGC
ACAGTGTCAAAAAGTCCTCCTCAACAAAGCACCACCAGCACCACGCCCTT
GTTCATCAAGCCTTCTGTGGAATATCGCCATAGAATCGCCTTCCCCCGTG
TATTGCGCACCAATAATAACTTTCTGCAGTCGCTAGAGCTTTATTCCGAT
GCAGTCATGCAGTACGAGGATAACCTGCTGCTGGCTACTGGCCGCACTCT
GATTCCTGTGGAAGAGCTCACCGAAATGGCAAGCGAGAAACTGATAGACA
TCCAAGATCAAATTGCGTCGGGTGAGCGCCAGGAGAAGGAGCCATGTGTT
CGCGACTTGCTGCTTGTGGAGCTGGTAAACTGGTTCAACACGCAGTTCTT
CCAGTGGGTAAACAATATACCTTGCCGCGTGTGTGGGAGTGAAGAGAGCA
GGCTGCGCCGCACTGAACGGGAAGGTGATATAAGGGTGGAAGTCACCGTT
TGCTGCGGCCAGGAGAGCAAGTTCTACCGCTATAACGACATTTCCCAGCT
CCTAGTTTCCCGTAAGGGCCGTTGCGGAGAATATGCCAATTGCTTCACAT
TCCTCTGTCGCGCCCTCGACTACGACGCCCGTATTGTCCACTCGCATTTT
GATCACGTCTGGACCGAGGTGTACTCCGAGGCCCAGATGCGTTGGCTCCA
TGTTGACCCCTCCGAGAACGTTATAGATTCTCCGCTGATGTATCAGCATG
GCTGGAAACGTCACATCGACTACATTCTTGCATACTCTAGGGACGACATC
CAAGATGTGACTTGGCGCTATACTAATGACCACCAGAAGATTCTACACCT
ACGAAAGCTGTGCGGGGAAAAAGAAATGGTGCAAACGCTGGACGCGATTC
GAGCAAAGCGGCGGCAAAATTGCACCGCCGATCGAAAGTTATTCCTCAGC
CAGCGCAATATGTACGAGGTCATCGGCTTGACGCTAGAGCGTAAGCCGAC
AGAAAACGAGCTGAAGGGTCGGAGTTCGGGAAGTCTTTCTTGGCGGCAGT
CACGTGGAGAGCATACTTTTACCAATATATTCGTTTTCAATCTAAGTGCA
ACCGAACTACAAAAAAGGCAACTTAATGTGCGTTACAGCTGTGCCACCGA
TACATACGAACGATATGCCAAAGAAGGAGAACACATCACTATTTTGGATA
GCTATAAGACATGGCAAAAAGCGCAATTTTCCTCAAAGAACATATTTCGG
AAAGTGGAACGCGATTGGAAAATGGCATATTTGGCTAGACTGGAGGATAC
CGATTGCGGAGAAATTGCCTGGACGTTTGATTTCAGCAAGACCAATTTAA
AGGTTAAGTCTTACAACTTAGTTTTCGAGACAAAAACTTTTGGCGACGGA
AAAATCAGCGTGACTGTCGATGCCACCGACGGAAGCGCTTCGGTTGAAAA
TGCCACTGGATTCAAAATAGTGGCCAAACTTACGGGTGGCAAGGGCGATG
TAGCATGGCAACACACACAACTGTTCAGGCAGAGTCTTAATTCAAGAGAC
TATCCCTTCGATCTGCAAGTGCAACTACATTGAAAGCTTTCTAGACCAT
BS15256.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pngl-RC | 1896 | CG7865-PC | 1..1896 | 38..1933 | 9480 | 100 | Plus |
Pngl-RA | 1896 | CG7865-PA | 1..1896 | 38..1933 | 9480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pngl-RC | 2670 | CG7865-RC | 76..1991 | 19..1934 | 9580 | 100 | Plus |
Pngl-RA | 2130 | CG7865-RA | 76..1991 | 19..1934 | 9580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6018417..6019253 | 505..1341 | 4185 | 100 | Plus |
2R | 25286936 | 2R | 6019600..6020016 | 1518..1934 | 2070 | 99.8 | Plus |
2R | 25286936 | 2R | 6017814..6018210 | 19..415 | 1985 | 100 | Plus |
2R | 25286936 | 2R | 6019453..6019549 | 1427..1523 | 485 | 100 | Plus |
2R | 25286936 | 2R | 6018264..6018355 | 414..505 | 460 | 100 | Plus |
2R | 25286936 | 2R | 6019308..6019393 | 1341..1426 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:59:11 has no hits.
BS15256.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:01 Download gff for
BS15256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PNGase-RB | 203..2118 | 17..1932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:57 Download gff for
BS15256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pngl-RA | 73..1989 | 17..1932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:01 Download gff for
BS15256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PNGase-RB | 203..2118 | 17..1932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:20 Download gff for
BS15256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pngl-RA | 73..1989 | 17..1932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:20 Download gff for
BS15256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6017811..6018208 | 17..413 | 99 | -> | Plus |
2R | 6018264..6018355 | 414..505 | 100 | -> | Plus |
2R | 6018418..6019253 | 506..1341 | 100 | -> | Plus |
2R | 6019309..6019393 | 1342..1426 | 100 | -> | Plus |
2R | 6019453..6019549 | 1427..1523 | 100 | -> | Plus |
2R | 6019606..6020014 | 1524..1932 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:57 Download gff for
BS15256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1906958..1907054 | 1427..1523 | 100 | -> | Plus |
arm_2R | 1905316..1905713 | 17..413 | 99 | -> | Plus |
arm_2R | 1905769..1905860 | 414..505 | 100 | -> | Plus |
arm_2R | 1905923..1906758 | 506..1341 | 100 | -> | Plus |
arm_2R | 1906814..1906898 | 1342..1426 | 100 | -> | Plus |
arm_2R | 1907111..1907519 | 1524..1932 | 100 | | Plus |
BS15256.3prime Sequence
844 bp (783 high quality bases) assembled on 2006-10-24
> BS15256.3prime
ATGGTCTAGAAAGCTTTCAATGTAGTTGCACTTGCAGATCGAAGGGATAG
TCTCTTGAATTAAGACTCTGCCTGAACAGTTGTGTGTGTTGCCATGCTAC
ATCGCCCTTGCCACCCGTAAGTTTGGCCACTATTTTGAATCCAGTGGCAT
TTTCAACCGAAGCGCTTCCGTCGGTGGCATCGACAGTCACGCTGATTTTT
CCGTCGCCAAAAGTTTTTGTCTCGAAAACTAAGTTGTAAGACTTAACCTT
TAAATTGGTCTTGCTGAAATCAAACGTCCAGGCAATTTCTCCGCAATCGG
TATCCTCCAGTCTAGCCAAATATGCCATTTTCCAATCGCGTTCCACTTTC
CGAAATATGTTCTTTGAGGAAAATTGCGCTTTTTGCCATGTCTTATAGCT
ATCCAAAATAGTGATGTGTTCTCCTTCTTTGGCATATCGTTCGTATGTAT
CGGTGGCACAGCTGTAACGCACATTAAGTTGCCTTTTTTGTAGTTCGGTT
GCACTTAGATTGAAAACGAATATATTGGTAAAAGTATGCTCTCCACGTGA
CTGCCGCCAAGAAAGACTTCCCGAACTCCGACCCTTCAGCTCGTTTTCTG
TCGGCTTACGCTCTAGCGTCAAGCCGATGACCTCGTACATATTGCGCTGG
CTGAGGAATAACTTTCGATCGGCGGTGCAATTTTGCCGCCGCTTTGCTCG
AATCGCGTCCAGCGTTTGCACCATTTCTTTTTCCCCGCACAGCTTTCGTA
GGTGTAGAATCTTCTGGTGGTCATTAGTATAGCGCCCAGTCACATCTTGG
ATGTCGTCCCTAGAGTATGCAAGAATGTAGTCGATGTGACGTTT
BS15256.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7865-PB | 1917 | PNGase-RB | 1090..1917 | 844..17 | 4115 | 99.8 | Minus |
CG7865-PA | 1896 | PNGase-RA | 1069..1896 | 844..17 | 4115 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pngl-RC | 2670 | CG7865-RC | 1163..1991 | 844..16 | 4130 | 99.9 | Minus |
Pngl-RA | 2130 | CG7865-RA | 1163..1991 | 844..16 | 4130 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:20:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6019600..6020016 | 432..16 | 2070 | 99.8 | Minus |
2R | 25286936 | 2R | 6019018..6019253 | 844..609 | 1165 | 99.6 | Minus |
2R | 25286936 | 2R | 6019453..6019549 | 523..427 | 485 | 100 | Minus |
2R | 25286936 | 2R | 6019308..6019393 | 609..524 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:20:36 has no hits.
BS15256.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:35 Download gff for
BS15256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7865-PA | 1069..1896 | 17..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:27 Download gff for
BS15256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7865-PA | 1069..1896 | 17..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:42:11 Download gff for
BS15256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pngl-RA | 1163..1996 | 8..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:46 Download gff for
BS15256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pngl-RA | 1163..1996 | 8..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:46 Download gff for
BS15256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6019018..6019253 | 609..844 | 99 | -> | Minus |
2R | 6019309..6019393 | 524..608 | 100 | -> | Minus |
2R | 6019453..6019549 | 427..523 | 100 | -> | Minus |
2R | 6019606..6020021 | 8..426 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:42:11 Download gff for
BS15256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1906523..1906758 | 609..844 | 99 | -> | Minus |
arm_2R | 1906814..1906898 | 524..608 | 100 | -> | Minus |
arm_2R | 1906958..1907054 | 427..523 | 100 | -> | Minus |
arm_2R | 1907111..1907526 | 8..426 | 99 | | Minus |
BS15256.5prime Sequence
820 bp (814 high quality bases) assembled on 2006-10-24
> BS15256.5prime
GAAGTTATCAGTCGACATGTGGCAGCTGGTCATCAACATGGTGGACATAA
ACTTGGAGTGCGTGCACCAGATCGAACCGAAGACCCGTTCTGCTGGTCAG
CAGCAGCAGGAGCGAGGGTTAAAGGAAGCCTACCTGGAAGCGGTCCGCAT
TCTGTTAGTGCTGCTGGAGAACATCTTGGCGCAGCCGGAGAACTCCATGT
TCCGCACCATACGGCAGGAAAACAAAGCTATTAAAGAAAAGCTGCTGTCC
TTGCCCGGCTGTGAGAGGTTACTGGAAGCCATAGGCTTCGTACGCGCCCC
CAGTTCCAACGCCTACACCTTGCCCACAGAGGTGTCACTGCAGCAGGTGA
AGAAGTACAGAGATGCGCTGAGCGAGAGACGCACTGCCTGGCTTAACGGC
ACAGTGTCAAAAAGTCCTCCTCAACAAAGCACCACCAGCACCACGCCCTT
GTTCATCAAGCCTTCTGTGGAATATCGCCATAGAATCGCCTTCCCCCGTG
TATTGCGCACCAATAATAACTTTCTGCAGTCGCTAGAGCTTTATTCCGAT
GCAGTCATGCAGTACGAGGATAACCTGCTGCTGGCTACTGGCCGCACTCT
GATTCCTGTGGAAGAGCTCACCGAAATGGCAAGCGAGAAACTGATAGACA
TCCAAGATCAAATTGCGTCGGGTGAGCGCCAGGAGAAGGAGCCATGTGTT
CGCGACTTGCTGCTTGTGGAGCTGGTAAACTGGTTCAACACGCAGTTCTT
CCAGTGGGTAAACAATATACCTTGCCGCGTGTGTGGGAGTGAAGAGAGCA
GGCTGCGCCGCACTGAACGG
BS15256.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7865-PB | 1917 | PNGase-RB | 1..804 | 17..820 | 4020 | 100 | Plus |
CG7865-PA | 1896 | PNGase-RA | 1..783 | 38..820 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pngl-RC | 2670 | CG7865-RC | 76..877 | 19..820 | 4010 | 100 | Plus |
Pngl-RA | 2130 | CG7865-RA | 76..877 | 19..820 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6017814..6018210 | 19..415 | 1985 | 100 | Plus |
2R | 25286936 | 2R | 6018417..6018732 | 505..820 | 1580 | 100 | Plus |
2R | 25286936 | 2R | 6018264..6018355 | 414..505 | 460 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 00:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 5020..5072 | 259..209 | 125 | 73.6 | Minus |
BS15256.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:36 Download gff for
BS15256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7865-PB | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:29 Download gff for
BS15256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7865-PB | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:23:27 Download gff for
BS15256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pngl-RA | 66..877 | 9..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:19 Download gff for
BS15256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pngl-RA | 66..877 | 9..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:19 Download gff for
BS15256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6017804..6018208 | 9..413 | 99 | -> | Plus |
2R | 6018264..6018355 | 414..505 | 100 | -> | Plus |
2R | 6018418..6018732 | 506..820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:23:27 Download gff for
BS15256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1905309..1905713 | 9..413 | 99 | -> | Plus |
arm_2R | 1905769..1905860 | 414..505 | 100 | -> | Plus |
arm_2R | 1905923..1906237 | 506..820 | 100 | | Plus |
BS15256.pep Sequence
Translation from 16 to 1932
> BS15256.pep
MWQLVINMVDINLECVHQIEPKTRSAGQQQQERGLKEAYLEAVRILLVLL
ENILAQPENSMFRTIRQENKAIKEKLLSLPGCERLLEAIGFVRAPSSNAY
TLPTEVSLQQVKKYRDALSERRTAWLNGTVSKSPPQQSTTSTTPLFIKPS
VEYRHRIAFPRVLRTNNNFLQSLELYSDAVMQYEDNLLLATGRTLIPVEE
LTEMASEKLIDIQDQIASGERQEKEPCVRDLLLVELVNWFNTQFFQWVNN
IPCRVCGSEESRLRRTEREGDIRVEVTVCCGQESKFYRYNDISQLLVSRK
GRCGEYANCFTFLCRALDYDARIVHSHFDHVWTEVYSEAQMRWLHVDPSE
NVIDSPLMYQHGWKRHIDYILAYSRDDIQDVTWRYTNDHQKILHLRKLCG
EKEMVQTLDAIRAKRRQNCTADRKLFLSQRNMYEVIGLTLERKPTENELK
GRSSGSLSWRQSRGEHTFTNIFVFNLSATELQKRQLNVRYSCATDTYERY
AKEGEHITILDSYKTWQKAQFSSKNIFRKVERDWKMAYLARLEDTDCGEI
AWTFDFSKTNLKVKSYNLVFETKTFGDGKISVTVDATDGSASVENATGFK
IVAKLTGGKGDVAWQHTQLFRQSLNSRDYPFDLQVQLH*
BS15256.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pngl-PC | 631 | CG7865-PC | 1..631 | 8..638 | 3306 | 100 | Plus |
Pngl-PA | 631 | CG7865-PA | 1..631 | 8..638 | 3306 | 100 | Plus |