Clone BS15256 Report

Search the DGRC for BS15256

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptPngl-RA
Protein status:BS15256.pep: gold
Sequenced Size:1949

Clone Sequence Records

BS15256.complete Sequence

1949 bp assembled on 2009-12-07

GenBank Submission: KX805864

> BS15256.complete
GAAGTTATCAGTCGACATGTGGCAGCTGGTCATCAACATGGTGGACATAA
ACTTGGAGTGCGTGCACCAGATCGAACCGAAGACCCGTTCTGCTGGTCAG
CAGCAGCAGGAGCGAGGGTTAAAGGAAGCCTACCTGGAAGCGGTCCGCAT
TCTGTTAGTGCTGCTGGAGAACATCTTGGCGCAGCCGGAGAACTCCATGT
TCCGCACCATACGGCAGGAAAACAAAGCTATTAAAGAAAAGCTGCTGTCC
TTGCCCGGCTGTGAGAGGTTACTGGAAGCCATAGGCTTCGTACGCGCCCC
CAGTTCCAACGCCTACACCTTGCCCACAGAGGTGTCACTGCAGCAGGTGA
AGAAGTACAGAGATGCGCTGAGCGAGAGACGCACTGCCTGGCTTAACGGC
ACAGTGTCAAAAAGTCCTCCTCAACAAAGCACCACCAGCACCACGCCCTT
GTTCATCAAGCCTTCTGTGGAATATCGCCATAGAATCGCCTTCCCCCGTG
TATTGCGCACCAATAATAACTTTCTGCAGTCGCTAGAGCTTTATTCCGAT
GCAGTCATGCAGTACGAGGATAACCTGCTGCTGGCTACTGGCCGCACTCT
GATTCCTGTGGAAGAGCTCACCGAAATGGCAAGCGAGAAACTGATAGACA
TCCAAGATCAAATTGCGTCGGGTGAGCGCCAGGAGAAGGAGCCATGTGTT
CGCGACTTGCTGCTTGTGGAGCTGGTAAACTGGTTCAACACGCAGTTCTT
CCAGTGGGTAAACAATATACCTTGCCGCGTGTGTGGGAGTGAAGAGAGCA
GGCTGCGCCGCACTGAACGGGAAGGTGATATAAGGGTGGAAGTCACCGTT
TGCTGCGGCCAGGAGAGCAAGTTCTACCGCTATAACGACATTTCCCAGCT
CCTAGTTTCCCGTAAGGGCCGTTGCGGAGAATATGCCAATTGCTTCACAT
TCCTCTGTCGCGCCCTCGACTACGACGCCCGTATTGTCCACTCGCATTTT
GATCACGTCTGGACCGAGGTGTACTCCGAGGCCCAGATGCGTTGGCTCCA
TGTTGACCCCTCCGAGAACGTTATAGATTCTCCGCTGATGTATCAGCATG
GCTGGAAACGTCACATCGACTACATTCTTGCATACTCTAGGGACGACATC
CAAGATGTGACTTGGCGCTATACTAATGACCACCAGAAGATTCTACACCT
ACGAAAGCTGTGCGGGGAAAAAGAAATGGTGCAAACGCTGGACGCGATTC
GAGCAAAGCGGCGGCAAAATTGCACCGCCGATCGAAAGTTATTCCTCAGC
CAGCGCAATATGTACGAGGTCATCGGCTTGACGCTAGAGCGTAAGCCGAC
AGAAAACGAGCTGAAGGGTCGGAGTTCGGGAAGTCTTTCTTGGCGGCAGT
CACGTGGAGAGCATACTTTTACCAATATATTCGTTTTCAATCTAAGTGCA
ACCGAACTACAAAAAAGGCAACTTAATGTGCGTTACAGCTGTGCCACCGA
TACATACGAACGATATGCCAAAGAAGGAGAACACATCACTATTTTGGATA
GCTATAAGACATGGCAAAAAGCGCAATTTTCCTCAAAGAACATATTTCGG
AAAGTGGAACGCGATTGGAAAATGGCATATTTGGCTAGACTGGAGGATAC
CGATTGCGGAGAAATTGCCTGGACGTTTGATTTCAGCAAGACCAATTTAA
AGGTTAAGTCTTACAACTTAGTTTTCGAGACAAAAACTTTTGGCGACGGA
AAAATCAGCGTGACTGTCGATGCCACCGACGGAAGCGCTTCGGTTGAAAA
TGCCACTGGATTCAAAATAGTGGCCAAACTTACGGGTGGCAAGGGCGATG
TAGCATGGCAACACACACAACTGTTCAGGCAGAGTCTTAATTCAAGAGAC
TATCCCTTCGATCTGCAAGTGCAACTACATTGAAAGCTTTCTAGACCAT

BS15256.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Pngl-RC 1896 CG7865-PC 1..1896 38..1933 9480 100 Plus
Pngl-RA 1896 CG7865-PA 1..1896 38..1933 9480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pngl-RC 2670 CG7865-RC 76..1991 19..1934 9580 100 Plus
Pngl-RA 2130 CG7865-RA 76..1991 19..1934 9580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6018417..6019253 505..1341 4185 100 Plus
2R 25286936 2R 6019600..6020016 1518..1934 2070 99.8 Plus
2R 25286936 2R 6017814..6018210 19..415 1985 100 Plus
2R 25286936 2R 6019453..6019549 1427..1523 485 100 Plus
2R 25286936 2R 6018264..6018355 414..505 460 100 Plus
2R 25286936 2R 6019308..6019393 1341..1426 430 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:59:11 has no hits.

BS15256.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:01 Download gff for BS15256.complete
Subject Subject Range Query Range Percent Splice Strand
PNGase-RB 203..2118 17..1932 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:57 Download gff for BS15256.complete
Subject Subject Range Query Range Percent Splice Strand
Pngl-RA 73..1989 17..1932 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:01 Download gff for BS15256.complete
Subject Subject Range Query Range Percent Splice Strand
PNGase-RB 203..2118 17..1932 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:20 Download gff for BS15256.complete
Subject Subject Range Query Range Percent Splice Strand
Pngl-RA 73..1989 17..1932 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:20 Download gff for BS15256.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6017811..6018208 17..413 99 -> Plus
2R 6018264..6018355 414..505 100 -> Plus
2R 6018418..6019253 506..1341 100 -> Plus
2R 6019309..6019393 1342..1426 100 -> Plus
2R 6019453..6019549 1427..1523 100 -> Plus
2R 6019606..6020014 1524..1932 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:57 Download gff for BS15256.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1906958..1907054 1427..1523 100 -> Plus
arm_2R 1905316..1905713 17..413 99 -> Plus
arm_2R 1905769..1905860 414..505 100 -> Plus
arm_2R 1905923..1906758 506..1341 100 -> Plus
arm_2R 1906814..1906898 1342..1426 100 -> Plus
arm_2R 1907111..1907519 1524..1932 100   Plus

BS15256.3prime Sequence

844 bp (783 high quality bases) assembled on 2006-10-24

> BS15256.3prime
ATGGTCTAGAAAGCTTTCAATGTAGTTGCACTTGCAGATCGAAGGGATAG
TCTCTTGAATTAAGACTCTGCCTGAACAGTTGTGTGTGTTGCCATGCTAC
ATCGCCCTTGCCACCCGTAAGTTTGGCCACTATTTTGAATCCAGTGGCAT
TTTCAACCGAAGCGCTTCCGTCGGTGGCATCGACAGTCACGCTGATTTTT
CCGTCGCCAAAAGTTTTTGTCTCGAAAACTAAGTTGTAAGACTTAACCTT
TAAATTGGTCTTGCTGAAATCAAACGTCCAGGCAATTTCTCCGCAATCGG
TATCCTCCAGTCTAGCCAAATATGCCATTTTCCAATCGCGTTCCACTTTC
CGAAATATGTTCTTTGAGGAAAATTGCGCTTTTTGCCATGTCTTATAGCT
ATCCAAAATAGTGATGTGTTCTCCTTCTTTGGCATATCGTTCGTATGTAT
CGGTGGCACAGCTGTAACGCACATTAAGTTGCCTTTTTTGTAGTTCGGTT
GCACTTAGATTGAAAACGAATATATTGGTAAAAGTATGCTCTCCACGTGA
CTGCCGCCAAGAAAGACTTCCCGAACTCCGACCCTTCAGCTCGTTTTCTG
TCGGCTTACGCTCTAGCGTCAAGCCGATGACCTCGTACATATTGCGCTGG
CTGAGGAATAACTTTCGATCGGCGGTGCAATTTTGCCGCCGCTTTGCTCG
AATCGCGTCCAGCGTTTGCACCATTTCTTTTTCCCCGCACAGCTTTCGTA
GGTGTAGAATCTTCTGGTGGTCATTAGTATAGCGCCCAGTCACATCTTGG
ATGTCGTCCCTAGAGTATGCAAGAATGTAGTCGATGTGACGTTT

BS15256.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7865-PB 1917 PNGase-RB 1090..1917 844..17 4115 99.8 Minus
CG7865-PA 1896 PNGase-RA 1069..1896 844..17 4115 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Pngl-RC 2670 CG7865-RC 1163..1991 844..16 4130 99.9 Minus
Pngl-RA 2130 CG7865-RA 1163..1991 844..16 4130 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6019600..6020016 432..16 2070 99.8 Minus
2R 25286936 2R 6019018..6019253 844..609 1165 99.6 Minus
2R 25286936 2R 6019453..6019549 523..427 485 100 Minus
2R 25286936 2R 6019308..6019393 609..524 430 100 Minus
Blast to na_te.dros performed on 2015-02-04 21:20:36 has no hits.

BS15256.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:35 Download gff for BS15256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7865-PA 1069..1896 17..844 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:27 Download gff for BS15256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7865-PA 1069..1896 17..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:42:11 Download gff for BS15256.3prime
Subject Subject Range Query Range Percent Splice Strand
Pngl-RA 1163..1996 8..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:46 Download gff for BS15256.3prime
Subject Subject Range Query Range Percent Splice Strand
Pngl-RA 1163..1996 8..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:46 Download gff for BS15256.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6019018..6019253 609..844 99 -> Minus
2R 6019309..6019393 524..608 100 -> Minus
2R 6019453..6019549 427..523 100 -> Minus
2R 6019606..6020021 8..426 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:42:11 Download gff for BS15256.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1906523..1906758 609..844 99 -> Minus
arm_2R 1906814..1906898 524..608 100 -> Minus
arm_2R 1906958..1907054 427..523 100 -> Minus
arm_2R 1907111..1907526 8..426 99   Minus

BS15256.5prime Sequence

820 bp (814 high quality bases) assembled on 2006-10-24

> BS15256.5prime
GAAGTTATCAGTCGACATGTGGCAGCTGGTCATCAACATGGTGGACATAA
ACTTGGAGTGCGTGCACCAGATCGAACCGAAGACCCGTTCTGCTGGTCAG
CAGCAGCAGGAGCGAGGGTTAAAGGAAGCCTACCTGGAAGCGGTCCGCAT
TCTGTTAGTGCTGCTGGAGAACATCTTGGCGCAGCCGGAGAACTCCATGT
TCCGCACCATACGGCAGGAAAACAAAGCTATTAAAGAAAAGCTGCTGTCC
TTGCCCGGCTGTGAGAGGTTACTGGAAGCCATAGGCTTCGTACGCGCCCC
CAGTTCCAACGCCTACACCTTGCCCACAGAGGTGTCACTGCAGCAGGTGA
AGAAGTACAGAGATGCGCTGAGCGAGAGACGCACTGCCTGGCTTAACGGC
ACAGTGTCAAAAAGTCCTCCTCAACAAAGCACCACCAGCACCACGCCCTT
GTTCATCAAGCCTTCTGTGGAATATCGCCATAGAATCGCCTTCCCCCGTG
TATTGCGCACCAATAATAACTTTCTGCAGTCGCTAGAGCTTTATTCCGAT
GCAGTCATGCAGTACGAGGATAACCTGCTGCTGGCTACTGGCCGCACTCT
GATTCCTGTGGAAGAGCTCACCGAAATGGCAAGCGAGAAACTGATAGACA
TCCAAGATCAAATTGCGTCGGGTGAGCGCCAGGAGAAGGAGCCATGTGTT
CGCGACTTGCTGCTTGTGGAGCTGGTAAACTGGTTCAACACGCAGTTCTT
CCAGTGGGTAAACAATATACCTTGCCGCGTGTGTGGGAGTGAAGAGAGCA
GGCTGCGCCGCACTGAACGG

BS15256.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7865-PB 1917 PNGase-RB 1..804 17..820 4020 100 Plus
CG7865-PA 1896 PNGase-RA 1..783 38..820 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pngl-RC 2670 CG7865-RC 76..877 19..820 4010 100 Plus
Pngl-RA 2130 CG7865-RA 76..877 19..820 4010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6017814..6018210 19..415 1985 100 Plus
2R 25286936 2R 6018417..6018732 505..820 1580 100 Plus
2R 25286936 2R 6018264..6018355 414..505 460 100 Plus
Blast to na_te.dros performed 2015-02-13 00:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 5020..5072 259..209 125 73.6 Minus

BS15256.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:36 Download gff for BS15256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7865-PB 1..804 17..820 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:29 Download gff for BS15256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7865-PB 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:23:27 Download gff for BS15256.5prime
Subject Subject Range Query Range Percent Splice Strand
Pngl-RA 66..877 9..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:19 Download gff for BS15256.5prime
Subject Subject Range Query Range Percent Splice Strand
Pngl-RA 66..877 9..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:19 Download gff for BS15256.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6017804..6018208 9..413 99 -> Plus
2R 6018264..6018355 414..505 100 -> Plus
2R 6018418..6018732 506..820 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:23:27 Download gff for BS15256.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1905309..1905713 9..413 99 -> Plus
arm_2R 1905769..1905860 414..505 100 -> Plus
arm_2R 1905923..1906237 506..820 100   Plus

BS15256.pep Sequence

Translation from 16 to 1932

> BS15256.pep
MWQLVINMVDINLECVHQIEPKTRSAGQQQQERGLKEAYLEAVRILLVLL
ENILAQPENSMFRTIRQENKAIKEKLLSLPGCERLLEAIGFVRAPSSNAY
TLPTEVSLQQVKKYRDALSERRTAWLNGTVSKSPPQQSTTSTTPLFIKPS
VEYRHRIAFPRVLRTNNNFLQSLELYSDAVMQYEDNLLLATGRTLIPVEE
LTEMASEKLIDIQDQIASGERQEKEPCVRDLLLVELVNWFNTQFFQWVNN
IPCRVCGSEESRLRRTEREGDIRVEVTVCCGQESKFYRYNDISQLLVSRK
GRCGEYANCFTFLCRALDYDARIVHSHFDHVWTEVYSEAQMRWLHVDPSE
NVIDSPLMYQHGWKRHIDYILAYSRDDIQDVTWRYTNDHQKILHLRKLCG
EKEMVQTLDAIRAKRRQNCTADRKLFLSQRNMYEVIGLTLERKPTENELK
GRSSGSLSWRQSRGEHTFTNIFVFNLSATELQKRQLNVRYSCATDTYERY
AKEGEHITILDSYKTWQKAQFSSKNIFRKVERDWKMAYLARLEDTDCGEI
AWTFDFSKTNLKVKSYNLVFETKTFGDGKISVTVDATDGSASVENATGFK
IVAKLTGGKGDVAWQHTQLFRQSLNSRDYPFDLQVQLH*

BS15256.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
Pngl-PC 631 CG7865-PC 1..631 8..638 3306 100 Plus
Pngl-PA 631 CG7865-PA 1..631 8..638 3306 100 Plus