Clone Sequence Records
BS15257.3prime Sequence
840 bp (763 high quality bases) assembled on 2006-10-24
> BS15257.3prime
ATGGTCTAGAAAGCTTCTAATCCAACCAATCTCGCATATATTCACAAGTT
ATAGCAGTTACATCGCCACAATTGGAGCAGTTTTTGATGACGGGACAAAT
GCCACATGGCATCTGGACCAGACCAGTCGGAGGAAGTGGGGCGTTCACCG
CCCGGTAGACGAAGGATCCATCCTGCTGGCGCACTCGTTCCGCATTGCCG
TCGTACACCACTGTTTTGAGAATTGTTTCCAGATCGGCCTCCGCTAGATT
AACCTTACTGATGCCCAGGTCCGAGATGAACTTCTGAACCTCGTTCACCG
TGCAGCAAGACATCTGCTTGAAGGCCAGTGGCCCCTCGCGCTTCTTTTCC
GCACTGTCGCGTTTCATTTGCAGAAAGCGCAGGCACTGCTGGTTGAGCAC
ATCCACAAACTCCACCTCAAAGTCCTGATCCTGGTACCAGGCTCCTCCCG
TAATGGAGAGATCCGGCTCTAGGTTGTACAGCATGTACACTTTCTTTTTG
CTGGCGTTCACCGACTTGACCGCCTTGATGAGCTTCTTGGTTTCTAGGTT
CTTGAGGATCTTGTTGAGCTGTATCATGTTCAGGTTGGACTTCATACGTA
TATCCCTAATCCAGATGCCTTTGTTGCCGCCCTCCTCAACAATGCCGTAG
ACGACCTTCTCCTCATTGTCCGCATCCTTGGGCAGGGCACTCTTCTTTTC
CGGGTCCTTGGCACGGTACACCAGCTTTTCACCCTTCTTCAGGATCTCGA
TCCCGCCCTCCTGCAGCAGTATATTCAAAGCTTCCACCCGCGTGGCCGCC
GGCACATCGGGCAGCGCCTTGGTCAGGTCATCGTTGGTGG
BS15257.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5380-PA | 882 | CG5380-RA | 59..882 | 840..17 | 4020 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:22:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5380-RB | 1102 | CG5380-RB | 144..967 | 840..17 | 4060 | 99.5 | Minus |
| CG5380-RA | 1022 | CG5380-RA | 64..887 | 840..17 | 4060 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:22:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22366215..22366703 | 17..505 | 2385 | 99.2 | Plus |
| 3R | 32079331 | 3R | 22366761..22367096 | 505..840 | 1680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:22:27 has no hits.
BS15257.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:37 Download gff for
BS15257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-PA | 59..882 | 17..840 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:30 Download gff for
BS15257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-PA | 59..882 | 17..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:21:24 Download gff for
BS15257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 64..892 | 11..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:18 Download gff for
BS15257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 64..892 | 11..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:18 Download gff for
BS15257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22366210..22366703 | 11..505 | 98 | <- | Plus |
| 3R | 22366762..22367096 | 506..840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:21:24 Download gff for
BS15257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18191932..18192425 | 11..505 | 98 | <- | Plus |
| arm_3R | 18192484..18192818 | 506..840 | 100 | | Plus |
BS15257.5prime Sequence
891 bp (770 high quality bases) assembled on 2006-10-24
> BS15257.5prime
GAAGTTATCAGTCGACATGGCCACTGAGGTGTCGCAACTTTTGCTGGCGG
TGGTCCAGGGCATCCCAGCCGGTGCCACCAACGATGACCTGACCAAGGCG
CTGCCCGATGTGCCGGCGGCCACGCGGGTGGAAGCTTTGAATATACTGCT
GCAGGAGGGCGGGATCGAGATCCTGAAGAAGGGTGAAAAGCTGGTGTACC
GTGCCAAGGACCCGGAAAAGAAGAGTGCCCTGCCCAAGGATGCGGACAAT
GAGGAGAAGGTCGTCTACGGCATTGTTGAGGAGGGCGGCAACAAAGGCAT
CTGGATTAGGGATATACGTATGAAGTCCAACCTGAACATGATACAGCTCA
ACAAGATCCTCAAGAACCTAGAAACCAAGAAGCTCATCAAGGCGGTCAAG
TCGGTGAACGCCAGCAAAAAGAAAGTGTACATGCTGTACAACCTAGAGCC
GGATCTCTCCATTACGGGAGGAGCCTGGTACCAGGATCAGGACTTTGAGG
TGGAGTTTGTGGATGTGCTCAACCAGCAGTGCCTGCGCTTTCTGCAAATG
AAACGCGACAGTGCGGAAAAGAAGCGCGAGGGGCCACTGGCCTTCAAGCA
GATGTCTTGCTGCACGGTGAACGAGGTTCAGAAGTTCATCTCGGACCTGG
GCATCAGTAAGGTTAATCTAGCGGAGGCCGATCTGGAAACAATTCTCAAA
ACAGTGGTGTACGACGGCAATGCGGAACGAGTGCGCCAGCAGGATGGATC
CTTCGTCTACCGGGCGGTGAACGCCCCACTTCCTCCGACTGGTCTGGTCC
AGATGCCATGTGGCATTTGTCCCGTCATCAAAAACTGCTCCAATTGTGGC
GATGTAACTGCTATAACTTGTGAATATATGCGAGAATGGTT
BS15257.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5380-PA | 882 | CG5380-RA | 1..875 | 17..891 | 4250 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5380-RB | 1102 | CG5380-RB | 86..960 | 17..891 | 4300 | 99.4 | Plus |
| CG5380-RA | 1022 | CG5380-RA | 6..880 | 17..891 | 4300 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22366222..22366703 | 891..410 | 2335 | 99 | Minus |
| 3R | 32079331 | 3R | 22366761..22367154 | 410..17 | 1970 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:46:36 has no hits.
BS15257.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:38 Download gff for
BS15257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:31 Download gff for
BS15257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:33 Download gff for
BS15257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 1..880 | 14..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:26:32 Download gff for
BS15257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 1..880 | 14..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:26:32 Download gff for
BS15257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22366222..22366703 | 410..891 | 98 | <- | Minus |
| 3R | 22366762..22367160 | 10..409 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:33 Download gff for
BS15257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18191944..18192425 | 410..891 | 98 | <- | Minus |
| arm_3R | 18192484..18192882 | 10..409 | 99 | | Minus |
BS15257.complete Sequence
914 bp assembled on 2006-11-01
GenBank Submission: FJ637904
> BS15257.complete
GAAGTTATCAGTCGACATGGCCACTGAGGTGTCGCAACTTTTGCTGGCGG
TGGTCCAGGGCATCCCAGCCGGTGCCACCAACGATGACCTGACCAAGGCG
CTGCCCGATGTGCCGGCGGCCACGCGGGTGGAAGCTTTGAATATACTGCT
GCAGGAGGGCGGGATCGAGATCCTGAAGAAGGGTGAAAAGCTGGTGTACC
GTGCCAAGGACCCGGAAAAGAAGAGTGCCCTGCCCAAGGATGCGGACAAT
GAGGAGAAGGTCGTCTACGGCATTGTTGAGGAGGGCGGCAACAAAGGCAT
CTGGATTAGGGATATACGTATGAAGTCCAACCTGAACATGATACAGCTCA
ACAAGATCCTCAAGAACCTAGAAACCAAGAAGCTCATCAAGGCGGTCAAG
TCGGTGAACGCCAGCAAAAAGAAAGTGTACATGCTGTACAACCTAGAGCC
GGATCTCTCCATTACGGGAGGAGCCTGGTACCAGGATCAGGACTTTGAGG
TGGAGTTTGTGGATGTGCTCAACCAGCAGTGCCTGCGCTTTCTGCAAATG
AAACGCGACAGTGCGGAAAAGAAGCGCGAGGGGCCACTGGCCTTCAAGCA
GATGTCTTGCTGCACGGTGAACGAGGTTCAGAAGTTCATCTCGGACCTGG
GCATCAGTAAGGTTAATCTAGCGGAGGCCGATCTGGAAACAATTCTCAAA
ACAGTGGTGTACGACGGCAATGCGGAACGAGTGCGCCAGCAGGATGGATC
CTTCGTCTACCGGGCGGTGAACGCCCCACTTCCTCCGACTGGTCTGGTCC
AGATGCCATGTGGCATTTGTCCCGTCATCAAAAACTGCTCCAATTGTGGC
GATGTAACTGCTATAACTTGTGAATATATGCGAGATTGGTTGGATTAGAA
GCTTTCTAGACCAT
BS15257.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5380-RB | 882 | CG5380-PB | 1..882 | 17..898 | 4350 | 99.5 | Plus |
| CG5380-RA | 882 | CG5380-PA | 1..882 | 17..898 | 4350 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5380-RB | 1102 | CG5380-RB | 86..967 | 17..898 | 4350 | 99.5 | Plus |
| CG5380-RA | 1022 | CG5380-RA | 6..887 | 17..898 | 4350 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22366215..22366703 | 898..410 | 2385 | 99.2 | Minus |
| 3R | 32079331 | 3R | 22366761..22367154 | 410..17 | 1970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:36:20 has no hits.
BS15257.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:13 Download gff for
BS15257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:51 Download gff for
BS15257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 1..892 | 14..904 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:03:23 Download gff for
BS15257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 6..887 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:13 Download gff for
BS15257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 1..892 | 14..904 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:05:32 Download gff for
BS15257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 6..887 | 17..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:05:32 Download gff for
BS15257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22366215..22366703 | 410..898 | 99 | <- | Minus |
| 3R | 22366762..22367154 | 17..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:03:23 Download gff for
BS15257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18191937..18192425 | 410..898 | 99 | <- | Minus |
| arm_3R | 18192484..18192876 | 17..409 | 100 | | Minus |
BS15257.pep Sequence
Translation from 16 to 897
> BS15257.pep
MATEVSQLLLAVVQGIPAGATNDDLTKALPDVPAATRVEALNILLQEGGI
EILKKGEKLVYRAKDPEKKSALPKDADNEEKVVYGIVEEGGNKGIWIRDI
RMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSIT
GGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMSCCT
VNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFVYRA
VNAPLPPTGLVQMPCGICPVIKNCSNCGDVTAITCEYMRDWLD*
BS15257.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5380-PB | 293 | CG5380-PB | 1..293 | 1..293 | 1507 | 100 | Plus |
| CG5380-PA | 293 | CG5380-PA | 1..293 | 1..293 | 1507 | 100 | Plus |
