Clone Sequence Records
BS15258.complete Sequence
1928 bp assembled on 2009-12-07
GenBank Submission: KX804218
> BS15258.complete
GAAGTTATCAGTCGACATGGATATTCCCGTCCTGAAGACCAATGGTCACG
AGAGGCTGGCCTCGCTGGACAAAAGCATGCCGCCGGCATCGCCCACTCTG
CCGAGTCCCACGATCCGCAGGAATAAAAGTGATGGAAAACTCATGGCCCA
GGATGTCAAGGAGGCCCGGGTGAAGGTCATCTACACTGGCGGCACCATCG
GCATGGTGCGCAACGAGCGGAATGTGTTAGCTCCCATTCCCAATGCCCTG
GTGCGCAGCATCCGCAAATATCCAAACATCCACGATGAGGAGTACGCGCT
GCGCCGCTTTGGAGCATCTGCATCGATGGCTCCACTGGTGCTGCCCATTG
TGCAGGGCGTAGATCGCCGGGTTATCTACCAGATCTCGGAATATACACCG
CTGCTGGACAGCAGCAATATGACGATGAACGATTGGGCGCGAATCGCCAG
CGATATTCAGCAATCGTACGAGTTCTTCGATGGCTTTGTGGTGCTCCATG
GCACCGACACGCTTTCCTACACCGCATCTGCATTGTCTTTCATGTTGGAA
AATTTGGGCAAGACGGTGATCATCACGGGCTCCCAAATACCCATCTTTGA
GACGCGAACAGATGGCAAGGACAATTTTACATCAGCCTTGATCATAGCCG
GTAACTACATCATTCCGGAGGTTTGCATCTTCTTTGGCCATAAGTTGATG
CGCGGCAATCGGACGGTGAAGGTCAGTTCGAATGCCTTGGACGCGTTCGA
CTCACCGAATGTTCCGCCGCTGGCCAGGATCGGCATTGATGTGAACGTCG
ACTACCGCCTGATATTCCGGCCATGCACCATTGAAAGGTTTTGCGTACAC
TTGAATCTCGACGAGAACGTCGGCTTGCTGCGAATCTTTCCGAGCATTTC
GCACTCCACATTCCGGGCTTTCCTGGCGCCACCGATTCGCGGCGTTGTCC
TGCAATCCTTCGGATCTGGAAACATACCATCGAACCGAAAAGATCTCATC
GATGAACTGCGTGCGGCTGGCGAACGAGGCGTTATCATCATCAATTGTAC
ACAGTGTCCCAATGGCACAGTGGCGGAGATCTACGATACGGGCAAGGTGC
TCTGCGATGTCGGTGTAATTCCCGGTTTCGATATGACGCCCGAGGCGGCG
CTGGCAAAGCTGGCCTATGTCATCGGCAAGGAGGAGTGGTCACTCGATAT
GAAGAAGCAGATGATGCAGTCAAGCCTGAGGGGCGAACTGACCTCCTTAA
AGGCTCCCAAAATGGAGGACTACGACTTGGTGGACGCAGTGGCACGGTCT
CTGCACTTGTCCTCGCCCCAAGAACTGGATCAGCTGGGCGAAACGCTCTT
TCCGGCCATGATCAACGCCGCTGTGGCCGAAGGTGATCCCAAGAAGATCA
ACAACTTGAAAGCCTATGGCGCCGACTTGTCGGGCACGAATCATGACCAG
CGAACGGCCCTGCACTTGGCTTGTCAGCTGGGAAACGTGGAGATCGTTAA
GTACCTACTGCAGAACGGGGTGTCCGTGCACGTGCGTGATCGGTATGACC
GCACTCCACTTCTGGAGGCTGTCGCCACCGATAGCCACGAGATCATCCAG
TTGCTCATCAACTGTGGTGCTCATTTGACGGGCTCTTCGCGAGCGGTGGG
CGAGCAATTGTGCGCGGCCGCTGCTAGGGGATCGATGATCAGATTGAAGT
CCTATCAATACGCCGGTGCCGATCTTGCCCAGTCGGATCCTTCGGGCAGG
ACGGCCTTGCACGTGGCAGCACTGCACGGATTTCCGGAGGTGGTGCAATA
CGTCCTGCCCTATTTCGAGAATCCGAACGAGAAGGACATGCTCGGCCTGA
CCGCCATGGATTATGCGGAGCGCGGCGGACACGCAGCGGTTATGGAGGTC
CTAAAATCATAGAAGCTTTCTAGACCAT
BS15258.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6428-RA | 1896 | CG6428-PA | 1..1896 | 17..1912 | 9315 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6428-RA | 2699 | CG6428-RA | 419..2316 | 17..1914 | 9325 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3966588..3967339 | 1210..459 | 3640 | 98.9 | Minus |
| X | 23542271 | X | 3965818..3966523 | 1914..1209 | 3500 | 99.7 | Minus |
| X | 23542271 | X | 3967397..3967633 | 460..224 | 1185 | 100 | Minus |
| X | 23542271 | X | 3968030..3968237 | 224..17 | 1025 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:49:11 has no hits.
BS15258.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:45 Download gff for
BS15258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6428-RA | 328..2223 | 17..1912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:43 Download gff for
BS15258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6428-RA | 419..2314 | 17..1912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:13 Download gff for
BS15258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6428-RA | 328..2223 | 17..1912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:37 Download gff for
BS15258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6428-RA | 419..2314 | 17..1912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:37 Download gff for
BS15258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3965820..3966521 | 1211..1912 | 99 | <- | Minus |
| X | 3966588..3967337 | 461..1210 | 98 | <- | Minus |
| X | 3967397..3967632 | 225..460 | 100 | <- | Minus |
| X | 3968030..3968237 | 17..224 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:43 Download gff for
BS15258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3859853..3860554 | 1211..1912 | 99 | <- | Minus |
| arm_X | 3860621..3861370 | 461..1210 | 98 | <- | Minus |
| arm_X | 3861430..3861665 | 225..460 | 100 | <- | Minus |
| arm_X | 3862063..3862270 | 17..224 | 99 | | Minus |
BS15258.3prime Sequence
826 bp (745 high quality bases) assembled on 2006-10-24
> BS15258.3prime
ATGGTCTAGAAAGCTTCTACGATTTTAGGACCTCCATAACCGCTGCGTGT
CCGCCGCGCTCCGCATAATCCATGGCGGTCAGGCCGAGCATGTCCTTCTC
GTTCGGATTCTCGAAATAGGGCAGGACGTATTGCACCACCTCCGGAAATC
CGTGCAGTGCTGCCACGTGCAAGGCCGTCCTGCCCGAAGGATCCGACTGG
GCAAGATCGGCACCGGCGTATTGATAGGACTTCAATCTGATCATCGATCC
CCTAGCAGCGGCCGCGCACAATTGCTCGCCCACCGCTCGCGAAGAGCCCG
TCAAATGAGCACCACAGTTGATGAGCAACTGGATGATCTCGTGGCTATCG
GTGGCGACAGCCTCCAGAAGTGGAGTGCGGTCATACCGATCACGCACGTG
CACGGACACCCCGTTCTGCAGTAGGTACTTAACGATCTCCACGTTTCCCA
GCTGACAAGCCAAGTGCAGGGCCGTTCGCTGGTCATGATTCGTGCCCGAC
AAGTCGGCGCCATAGGCTTTCAAGTTGTTGATCTTCTTGGGATCACCTTC
GGCCACAGCGGCGTTGATCATGGCCGGAAAGAGCGTTTCGCCCAGCTGAT
CCAGTTCTTGGGGCGAGGACAAGTGCAGAGACCGTGCCACTGCGTCCACC
AAGTCGTAGTCCTCCATTTTGGGAGCCTTTAAGGAGGTCAGTTCGCCCCT
CAGGCTTGACTGCATCATCTGCTTCTTCATATCGAGTGACCACTCCTCCT
TGCCGATGACATAGGCCAGCTTTGCCCGCGCCGCCTCGGGCGTCATATCG
AAACCGGGAATTACACCGACATCGCA
BS15258.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6428-PA | 1896 | CG6428-RA | 1087..1892 | 826..21 | 3930 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6428-RA | 2699 | CG6428-RA | 1505..2316 | 826..15 | 3985 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3965818..3966523 | 15..720 | 3485 | 99.6 | Plus |
| X | 23542271 | X | 3966588..3966695 | 719..826 | 510 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:25:00 has no hits.
BS15258.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:39 Download gff for
BS15258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6428-PA | 1088..1896 | 17..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:33 Download gff for
BS15258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6428-PA | 1088..1896 | 17..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:09 Download gff for
BS15258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6428-RA | 1506..2322 | 8..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:38 Download gff for
BS15258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6428-RA | 1506..2322 | 8..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:38 Download gff for
BS15258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3965812..3966521 | 8..718 | 99 | <- | Plus |
| X | 3966588..3966694 | 719..825 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:09 Download gff for
BS15258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3859845..3860554 | 8..718 | 99 | <- | Plus |
| arm_X | 3860621..3860727 | 719..825 | 98 | | Plus |
BS15258.5prime Sequence
831 bp (825 high quality bases) assembled on 2006-10-24
> BS15258.5prime
GAAGTTATCAGTCGACATGGATATTCCCGTCCTGAAGACCAATGGTCACG
AGAGGCTGGCCTCGCTGGACAAAAGCATGCCGCCGGCATCGCCCACTCTG
CCGAGTCCCACGATCCGCAGGAATAAAAGTGATGGAAAACTCATGGCCCA
GGATGTCAAGGAGGCCCGGGTGAAGGTCATCTACACTGGCGGCACCATCG
GCATGGTGCGCAACGAGCGGAATGTGTTAGCTCCCATTCCCAATGCCCTG
GTGCGCAGCATCCGCAAATATCCAAACATCCACGATGAGGAGTACGCGCT
GCGCCGCTTTGGAGCATCTGCATCGATGGCTCCACTGGTGCTGCCCATTG
TGCAGGGCGTAGATCGCCGGGTTATCTACCAGATCTCGGAATATACACCG
CTGCTGGACAGCAGCAATATGACGATGAACGATTGGGCGCGAATCGCCAG
CGATATTCAGCAATCGTACGAGTTCTTCGATGGCTTTGTGGTGCTCCATG
GCACCGACACGCTTTCCTACACCGCATCTGCATTGTCTTTCATGTTGGAA
AATTTGGGCAAGACGGTGATCATCACGGGCTCCCAAATACCCATCTTTGA
GACGCGAACAGATGGCAAGGACAATTTTACATCAGCCTTGATCATAGCCG
GTAACTACATCATTCCGGAGGTTTGCATCTTCTTTGGCCATAAGTTGATG
CGCGGCAATCGGACGGTGAAGGTCAGTTCGAATGCCTTGGACGCGTTCGA
CTCACCGAATGTTCCGCCGCTGGCCAGGATCGGCATTGATGTGAACGTCG
ACTACCGCCTGATATTCCGGCCATGCACCAT
BS15258.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6428-PA | 1896 | CG6428-RA | 1..812 | 17..828 | 3910 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6428-RA | 2699 | CG6428-RA | 419..1230 | 17..828 | 3970 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:52:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3966970..3967339 | 828..459 | 1775 | 98.6 | Minus |
| X | 23542271 | X | 3967397..3967633 | 460..224 | 1185 | 100 | Minus |
| X | 23542271 | X | 3968030..3968237 | 224..17 | 1025 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:52:24 has no hits.
BS15258.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:40 Download gff for
BS15258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6428-PA | 1..815 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:34 Download gff for
BS15258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6428-PA | 1..815 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:57 Download gff for
BS15258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6428-RA | 419..1233 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:48 Download gff for
BS15258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6428-RA | 419..1233 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:48 Download gff for
BS15258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3966967..3967337 | 461..831 | 98 | <- | Minus |
| X | 3967397..3967632 | 225..460 | 100 | <- | Minus |
| X | 3968030..3968237 | 17..224 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:57 Download gff for
BS15258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3861000..3861370 | 461..831 | 98 | <- | Minus |
| arm_X | 3861430..3861665 | 225..460 | 100 | <- | Minus |
| arm_X | 3862063..3862270 | 17..224 | 99 | | Minus |
BS15258.pep Sequence
Translation from 16 to 1911
> BS15258.pep
MDIPVLKTNGHERLASLDKSMPPASPTLPSPTIRRNKSDGKLMAQDVKEA
RVKVIYTGGTIGMVRNERNVLAPIPNALVRSIRKYPNIHDEEYALRRFGA
SASMAPLVLPIVQGVDRRVIYQISEYTPLLDSSNMTMNDWARIASDIQQS
YEFFDGFVVLHGTDTLSYTASALSFMLENLGKTVIITGSQIPIFETRTDG
KDNFTSALIIAGNYIIPEVCIFFGHKLMRGNRTVKVSSNALDAFDSPNVP
PLARIGIDVNVDYRLIFRPCTIERFCVHLNLDENVGLLRIFPSISHSTFR
AFLAPPIRGVVLQSFGSGNIPSNRKDLIDELRAAGERGVIIINCTQCPNG
TVAEIYDTGKVLCDVGVIPGFDMTPEAALAKLAYVIGKEEWSLDMKKQMM
QSSLRGELTSLKAPKMEDYDLVDAVARSLHLSSPQELDQLGETLFPAMIN
AAVAEGDPKKINNLKAYGADLSGTNHDQRTALHLACQLGNVEIVKYLLQN
GVSVHVRDRYDRTPLLEAVATDSHEIIQLLINCGAHLTGSSRAVGEQLCA
AAARGSMIRLKSYQYAGADLAQSDPSGRTALHVAALHGFPEVVQYVLPYF
ENPNEKDMLGLTAMDYAERGGHAAVMEVLKS*
BS15258.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6428-PA | 631 | CG6428-PA | 1..631 | 1..631 | 3234 | 100 | Plus |
| CG8526-PA | 605 | CG8526-PA | 11..589 | 48..630 | 1549 | 51.5 | Plus |
| CG8526-PB | 604 | CG8526-PB | 11..588 | 48..630 | 1536 | 51.5 | Plus |
| Ank-PE | 1549 | CG1651-PE | 648..813 | 464..630 | 179 | 33.3 | Plus |
| Ank-PD | 1549 | CG1651-PD | 648..813 | 464..630 | 179 | 33.3 | Plus |
| Ank-PE | 1549 | CG1651-PE | 534..713 | 449..629 | 170 | 29.7 | Plus |
