Clone BS15263 Report

Search the DGRC for BS15263

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG15209-RA
Protein status:BS15263.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15263.5prime Sequence

474 bp (474 high quality bases) assembled on 2006-10-24

> BS15263.5prime
GAAGTTATCAGTCGACATGAAACCCATTGGGTGCAACAATATTCCGGTCA
TCTTCCTGGTGATCCTCGGCATGGTCAGCCTGGCCAATTCGCTGCCCATG
AATCCCGAACAGGAGCTAAAAGATGTCGACGAGCCATTGGGTCAGCAACG
TCAGCATAAACAGCAGCATGTGCAGCAGATGCAGCGCATGGTGAAGAGCG
AAGCGGTGCCAGAGTCGGAGTTCGTCGGAAAAATTGCGCCACGCAATGAG
CAGAATCCGGAGGATGAATACGATGCCGTCACATTGGTGGAGGAGCTAGA
GGCCGCCGGAGTTAAGCTGGCCGATCGACGTGATCTGCGCAAGCTAACCT
ACACGGAGCTGGCCCGCCTGCTAGCCCTATGGCATCTGTCCCAGAATCGC
AATGTTTACAATGCCAAAGGACCGGAGGAGCAGCCCAATCAGGCCATCGA
TGAGCGTTAAAAGCTTTCTAGACC

BS15263.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG15209-PA 444 CG15209-RA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15209-RA 791 CG15209-RA 40..485 15..460 2230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10842244..10842689 15..460 2230 100 Plus
Blast to na_te.dros performed 2015-02-13 00:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2391 143..185 116 74.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6854..6889 143..178 108 77.8 Plus
gtwin 7411 gtwin GTWIN 7411bp 2392..2423 97..128 106 81.2 Plus

BS15263.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:49 Download gff for BS15263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15209-PA 1..444 17..460 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:47 Download gff for BS15263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15209-PA 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:23:32 Download gff for BS15263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15209-RA 86..538 11..467 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:48 Download gff for BS15263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15209-RA 36..488 11..467 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:48 Download gff for BS15263.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10842240..10842692 11..467 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:23:32 Download gff for BS15263.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10736273..10736725 11..467 98   Plus

BS15263.complete Sequence

476 bp assembled on 2006-11-01

GenBank Submission: FJ637905

> BS15263.complete
GAAGTTATCAGTCGACATGAAACCCATTGGGTGCAACAATATTCCGGTCA
TCTTCCTGGTGATCCTCGGCATGGTCAGCCTGGCCAATTCGCTGCCCATG
AATCCCGAACAGGAGCTAAAAGATGTCGACGAGCCATTGGGTCAGCAACG
TCAGCATAAACAGCAGCATGTGCAGCAGATGCAGCGCATGGTGAAGAGCG
AAGCGGTGCCAGAGTCGGAGTTCGTCGGAAAAATTGCGCCACGCAATGAG
CAGAATCCGGAGGATGAATACGATGCCGTCACATTGGTGGAGGAGCTAGA
GGCCGCCGGAGTTAAGCTGGCCGATCGACGTGATCTGCGCAAGCTAACCT
ACACGGAGCTGGCCCGCCTGCTAGCCCTATGGCATCTGTCCCAGAATCGC
AATGTTTACAATGCCAAAGGACCGGAGGAGCAGCCCAATCAGGCCATCGA
TGAGCGTTAAAAGCTTTCTAGACCAT

BS15263.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG15209-RA 444 CG15209-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15209-RA 791 CG15209-RA 40..485 15..460 2230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10842244..10842689 15..460 2230 100 Plus
Blast to na_te.dros performed 2014-11-26 15:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2391 143..185 116 74.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6854..6889 143..178 108 77.8 Plus
gtwin 7411 gtwin GTWIN 7411bp 2392..2423 97..128 106 81.2 Plus

BS15263.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:14 Download gff for BS15263.complete
Subject Subject Range Query Range Percent Splice Strand
CG15209-RA 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:53 Download gff for BS15263.complete
Subject Subject Range Query Range Percent Splice Strand
CG15209-RA 86..538 11..467 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:23 Download gff for BS15263.complete
Subject Subject Range Query Range Percent Splice Strand
CG15209-RA 92..533 17..458 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:14 Download gff for BS15263.complete
Subject Subject Range Query Range Percent Splice Strand
CG15209-RA 86..538 11..467 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:59 Download gff for BS15263.complete
Subject Subject Range Query Range Percent Splice Strand
CG15209-RA 42..483 17..458 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:59 Download gff for BS15263.complete
Subject Subject Range Query Range Percent Splice Strand
X 10842246..10842687 17..458 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:23 Download gff for BS15263.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10736279..10736720 17..458 100   Plus

BS15263.pep Sequence

Translation from 16 to 459

> BS15263.pep
MKPIGCNNIPVIFLVILGMVSLANSLPMNPEQELKDVDEPLGQQRQHKQQ
HVQQMQRMVKSEAVPESEFVGKIAPRNEQNPEDEYDAVTLVEELEAAGVK
LADRRDLRKLTYTELARLLALWHLSQNRNVYNAKGPEEQPNQAIDER*

BS15263.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG15209-PA 147 CG15209-PA 1..147 1..147 755 100 Plus