Clone Sequence Records
BS15263.5prime Sequence
474 bp (474 high quality bases) assembled on 2006-10-24
> BS15263.5prime
GAAGTTATCAGTCGACATGAAACCCATTGGGTGCAACAATATTCCGGTCA
TCTTCCTGGTGATCCTCGGCATGGTCAGCCTGGCCAATTCGCTGCCCATG
AATCCCGAACAGGAGCTAAAAGATGTCGACGAGCCATTGGGTCAGCAACG
TCAGCATAAACAGCAGCATGTGCAGCAGATGCAGCGCATGGTGAAGAGCG
AAGCGGTGCCAGAGTCGGAGTTCGTCGGAAAAATTGCGCCACGCAATGAG
CAGAATCCGGAGGATGAATACGATGCCGTCACATTGGTGGAGGAGCTAGA
GGCCGCCGGAGTTAAGCTGGCCGATCGACGTGATCTGCGCAAGCTAACCT
ACACGGAGCTGGCCCGCCTGCTAGCCCTATGGCATCTGTCCCAGAATCGC
AATGTTTACAATGCCAAAGGACCGGAGGAGCAGCCCAATCAGGCCATCGA
TGAGCGTTAAAAGCTTTCTAGACC
BS15263.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15209-PA | 444 | CG15209-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15209-RA | 791 | CG15209-RA | 40..485 | 15..460 | 2230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10842244..10842689 | 15..460 | 2230 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 00:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2391 | 143..185 | 116 | 74.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6854..6889 | 143..178 | 108 | 77.8 | Plus |
gtwin | 7411 | gtwin GTWIN 7411bp | 2392..2423 | 97..128 | 106 | 81.2 | Plus |
BS15263.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:49 Download gff for
BS15263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-PA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:47 Download gff for
BS15263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-PA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:23:32 Download gff for
BS15263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 86..538 | 11..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:48 Download gff for
BS15263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 36..488 | 11..467 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:48 Download gff for
BS15263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10842240..10842692 | 11..467 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:23:32 Download gff for
BS15263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10736273..10736725 | 11..467 | 98 | | Plus |
BS15263.complete Sequence
476 bp assembled on 2006-11-01
GenBank Submission: FJ637905
> BS15263.complete
GAAGTTATCAGTCGACATGAAACCCATTGGGTGCAACAATATTCCGGTCA
TCTTCCTGGTGATCCTCGGCATGGTCAGCCTGGCCAATTCGCTGCCCATG
AATCCCGAACAGGAGCTAAAAGATGTCGACGAGCCATTGGGTCAGCAACG
TCAGCATAAACAGCAGCATGTGCAGCAGATGCAGCGCATGGTGAAGAGCG
AAGCGGTGCCAGAGTCGGAGTTCGTCGGAAAAATTGCGCCACGCAATGAG
CAGAATCCGGAGGATGAATACGATGCCGTCACATTGGTGGAGGAGCTAGA
GGCCGCCGGAGTTAAGCTGGCCGATCGACGTGATCTGCGCAAGCTAACCT
ACACGGAGCTGGCCCGCCTGCTAGCCCTATGGCATCTGTCCCAGAATCGC
AATGTTTACAATGCCAAAGGACCGGAGGAGCAGCCCAATCAGGCCATCGA
TGAGCGTTAAAAGCTTTCTAGACCAT
BS15263.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15209-RA | 444 | CG15209-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15209-RA | 791 | CG15209-RA | 40..485 | 15..460 | 2230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10842244..10842689 | 15..460 | 2230 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2391 | 143..185 | 116 | 74.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6854..6889 | 143..178 | 108 | 77.8 | Plus |
gtwin | 7411 | gtwin GTWIN 7411bp | 2392..2423 | 97..128 | 106 | 81.2 | Plus |
BS15263.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:14 Download gff for
BS15263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:53 Download gff for
BS15263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 86..538 | 11..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:23 Download gff for
BS15263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 92..533 | 17..458 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:14 Download gff for
BS15263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 86..538 | 11..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:59 Download gff for
BS15263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 42..483 | 17..458 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:59 Download gff for
BS15263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10842246..10842687 | 17..458 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:23 Download gff for
BS15263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10736279..10736720 | 17..458 | 100 | | Plus |
BS15263.pep Sequence
Translation from 16 to 459
> BS15263.pep
MKPIGCNNIPVIFLVILGMVSLANSLPMNPEQELKDVDEPLGQQRQHKQQ
HVQQMQRMVKSEAVPESEFVGKIAPRNEQNPEDEYDAVTLVEELEAAGVK
LADRRDLRKLTYTELARLLALWHLSQNRNVYNAKGPEEQPNQAIDER*
BS15263.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15209-PA | 147 | CG15209-PA | 1..147 | 1..147 | 755 | 100 | Plus |