Clone Sequence Records
BS15265.3prime Sequence
498 bp (498 high quality bases) assembled on 2006-10-24
> BS15265.3prime
ATGGTCTAGAAAGCTTTTACGTAGTGATAATCATGGAAACTGGTGCACTG
CGCTCTCGCTGCTTGGCCACAATCTTGTTGGCTATGCGATCCAAGTTACG
TTGTCCTTGCGGAGTCAGCTTACGACCACCATCCGGGTGCCTCTCCACCA
TGTTTGCAGCTTCCAAGGCTTGAAGAGCCTTGCGAATACAGCCATCCGAT
GAGCGACAGTGCTTGGACGGACGAACACCGTTGCGCTTGCGCCCGCTATA
GACCTTGGTGAAGGCCCCAACGCCGGCGGGACTGCGCAGGTACAGGTGTC
TCATAATAGAGGCGCAGCGAGTGTAGAACCAGTCGTCGTCGGTAGGAGCA
GTCTCCTTGAACTTGCCAGTCTTCATATAGACGGCCTGTTCGGGCACAAA
AATTTTTCCGGATTTTTTGAGAAAAGCAGCCATGTTTTTGGTCAGAACGT
GCTGATCGATTTCCTTTACTGTGACTCCAGGCATGTCGACTGATAACT
BS15265.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5338-PB | 468 | RpS19b-RB | 1..464 | 484..21 | 2295 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:25:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19b-RC | 659 | CG5338-RC | 61..530 | 486..17 | 2320 | 99.6 | Minus |
RpS19b-RB | 666 | CG5338-RB | 68..537 | 486..17 | 2320 | 99.6 | Minus |
RpS19a-RE | 678 | CG4464-RE | 242..520 | 335..57 | 210 | 73 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23933089..23933397 | 178..486 | 1545 | 100 | Plus |
3R | 32079331 | 3R | 23932858..23933021 | 17..180 | 790 | 98.8 | Plus |
X | 23542271 | X | 16638484..16638594 | 335..225 | 195 | 78.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:25:08 has no hits.
BS15265.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:52 Download gff for
BS15265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5338-PB | 1..468 | 17..484 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:52 Download gff for
BS15265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5338-PB | 1..468 | 17..484 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:11 Download gff for
BS15265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 64..537 | 17..491 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:58 Download gff for
BS15265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 64..537 | 17..491 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:58 Download gff for
BS15265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23932858..23933019 | 17..178 | 98 | <- | Plus |
3R | 23933090..23933401 | 179..491 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:11 Download gff for
BS15265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19758580..19758741 | 17..178 | 98 | <- | Plus |
arm_3R | 19758812..19759123 | 179..491 | 99 | | Plus |
BS15265.5prime Sequence
498 bp (498 high quality bases) assembled on 2006-10-24
> BS15265.5prime
GAAGTTATCAGTCGACATGCCTGGAGTCACAGTAAAGGAAATCGATCAGC
ACGTTCTGACCAAAAACATGGCTGCTTTTCTCAAAAAATCCGGAAAAATT
TTTGTGCCCGAACAGGCCGTCTATATGAAGACTGGCAAGTTCAAGGAGAC
TGCTCCTACCGACGACGACTGGTTCTACACTCGCTGCGCCTCTATTATGA
GACACCTGTACCTGCGCAGTCCCGCCGGCGTTGGGGCCTTCACCAAGGTC
TATAGCGGGCGCAAGCGCAACGGTGTTCGTCCGTCCAAGCACTGTCGCTC
ATCGGATGGCTGTATTCGCAAGGCTCTTCAAGCCTTGGAAGCTGCAAACA
TGGTGGAGAGGCACCCGGATGGTGGTCGTAAGCTGACTCCGCAAGGACAA
CGTAACTTGGATCGCATAGCCAACAAGATTGTGGCCAAGCAGCGAGAGCG
CAGTGCACCAGTTTCCATGATTATCACTACCTAAAAGCTTTCTAGACC
BS15265.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5338-PB | 468 | RpS19b-RB | 1..468 | 17..484 | 2315 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19b-RC | 659 | CG5338-RC | 61..530 | 15..484 | 2335 | 99.8 | Plus |
RpS19b-RB | 666 | CG5338-RB | 68..537 | 15..484 | 2335 | 99.8 | Plus |
RpS19a-RE | 678 | CG4464-RE | 242..520 | 166..444 | 210 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23933089..23933397 | 323..15 | 1545 | 100 | Minus |
3R | 32079331 | 3R | 23932858..23933021 | 484..321 | 805 | 99.4 | Minus |
X | 23542271 | X | 16638484..16638594 | 166..276 | 195 | 78.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:37:13 has no hits.
BS15265.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:53 Download gff for
BS15265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5338-PB | 1..468 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:54 Download gff for
BS15265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5338-PB | 1..468 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:54:30 Download gff for
BS15265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 64..537 | 10..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:38 Download gff for
BS15265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 64..537 | 10..484 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:38 Download gff for
BS15265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23932858..23933019 | 323..484 | 99 | <- | Minus |
3R | 23933090..23933401 | 10..322 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:54:30 Download gff for
BS15265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19758580..19758741 | 323..484 | 99 | <- | Minus |
arm_3R | 19758812..19759123 | 10..322 | 99 | | Minus |
BS15265.complete Sequence
500 bp assembled on 2006-11-01
GenBank Submission: FJ637906
> BS15265.complete
GAAGTTATCAGTCGACATGCCTGGAGTCACAGTAAAGGAAATCGATCAGC
ACGTTCTGACCAAAAACATGGCTGCTTTTCTCAAAAAATCCGGAAAAATT
TTTGTGCCCGAACAGGCCGTCTATATGAAGACTGGCAAGTTCAAGGAGAC
TGCTCCTACCGACGACGACTGGTTCTACACTCGCTGCGCCTCTATTATGA
GACACCTGTACCTGCGCAGTCCCGCCGGCGTTGGGGCCTTCACCAAGGTC
TATAGCGGGCGCAAGCGCAACGGTGTTCGTCCGTCCAAGCACTGTCGCTC
ATCGGATGGCTGTATTCGCAAGGCTCTTCAAGCCTTGGAAGCTGCAAACA
TGGTGGAGAGGCACCCGGATGGTGGTCGTAAGCTGACTCCGCAAGGACAA
CGTAACTTGGATCGCATAGCCAACAAGATTGTGGCCAAGCAGCGAGAGCG
CAGTGCACCAGTTTCCATGATTATCACTACCTAAAAGCTTTCTAGACCAT
BS15265.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:55:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19b-RC | 468 | CG5338-PC | 1..468 | 17..484 | 2325 | 99.8 | Plus |
RpS19b-RB | 468 | CG5338-PB | 1..468 | 17..484 | 2325 | 99.8 | Plus |
RpS19a-RE | 471 | CG4464-PE | 150..260 | 166..276 | 195 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19b-RC | 659 | CG5338-RC | 61..530 | 15..484 | 2335 | 99.8 | Plus |
RpS19b-RB | 666 | CG5338-RB | 68..537 | 15..484 | 2335 | 99.8 | Plus |
RpS19a-RE | 678 | CG4464-RE | 242..352 | 166..276 | 195 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23933089..23933397 | 323..15 | 1545 | 100 | Minus |
3R | 32079331 | 3R | 23932858..23933021 | 484..321 | 805 | 99.4 | Minus |
X | 23542271 | X | 16638484..16638594 | 166..276 | 195 | 78.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:55:22 has no hits.
BS15265.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:15 Download gff for
BS15265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 1..468 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:55 Download gff for
BS15265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 64..537 | 10..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:02 Download gff for
BS15265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 70..535 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:16 Download gff for
BS15265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 64..537 | 10..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:06 Download gff for
BS15265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 70..535 | 17..482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:06 Download gff for
BS15265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23932860..23933019 | 323..482 | 99 | <- | Minus |
3R | 23933090..23933395 | 17..322 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:02 Download gff for
BS15265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19758582..19758741 | 323..482 | 99 | <- | Minus |
arm_3R | 19758812..19759117 | 17..322 | 100 | | Minus |
BS15265.pep Sequence
Translation from 16 to 483
> BS15265.pep
MPGVTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDD
DWFYTRCASIMRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCI
RKALQALEAANMVERHPDGGRKLTPQGQRNLDRIANKIVAKQRERSAPVS
MIITT*
BS15265.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19b-PC | 155 | CG5338-PC | 1..155 | 1..155 | 807 | 100 | Plus |
RpS19b-PB | 155 | CG5338-PB | 1..155 | 1..155 | 807 | 100 | Plus |
RpS19a-PE | 156 | CG4464-PE | 1..153 | 1..153 | 541 | 66.7 | Plus |
RpS19a-PA | 156 | CG4464-PA | 1..153 | 1..153 | 541 | 66.7 | Plus |
RpS19a-PC | 156 | CG4464-PC | 1..153 | 1..153 | 541 | 66.7 | Plus |