Clone BS15265 Report

Search the DGRC for BS15265

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptRpS19b-RB
Protein status:BS15265.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15265.3prime Sequence

498 bp (498 high quality bases) assembled on 2006-10-24

> BS15265.3prime
ATGGTCTAGAAAGCTTTTACGTAGTGATAATCATGGAAACTGGTGCACTG
CGCTCTCGCTGCTTGGCCACAATCTTGTTGGCTATGCGATCCAAGTTACG
TTGTCCTTGCGGAGTCAGCTTACGACCACCATCCGGGTGCCTCTCCACCA
TGTTTGCAGCTTCCAAGGCTTGAAGAGCCTTGCGAATACAGCCATCCGAT
GAGCGACAGTGCTTGGACGGACGAACACCGTTGCGCTTGCGCCCGCTATA
GACCTTGGTGAAGGCCCCAACGCCGGCGGGACTGCGCAGGTACAGGTGTC
TCATAATAGAGGCGCAGCGAGTGTAGAACCAGTCGTCGTCGGTAGGAGCA
GTCTCCTTGAACTTGCCAGTCTTCATATAGACGGCCTGTTCGGGCACAAA
AATTTTTCCGGATTTTTTGAGAAAAGCAGCCATGTTTTTGGTCAGAACGT
GCTGATCGATTTCCTTTACTGTGACTCCAGGCATGTCGACTGATAACT

BS15265.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5338-PB 468 RpS19b-RB 1..464 484..21 2295 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19b-RC 659 CG5338-RC 61..530 486..17 2320 99.6 Minus
RpS19b-RB 666 CG5338-RB 68..537 486..17 2320 99.6 Minus
RpS19a-RE 678 CG4464-RE 242..520 335..57 210 73 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23933089..23933397 178..486 1545 100 Plus
3R 32079331 3R 23932858..23933021 17..180 790 98.8 Plus
X 23542271 X 16638484..16638594 335..225 195 78.4 Minus
Blast to na_te.dros performed on 2015-02-12 10:25:08 has no hits.

BS15265.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:52 Download gff for BS15265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5338-PB 1..468 17..484 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:52 Download gff for BS15265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5338-PB 1..468 17..484 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:11 Download gff for BS15265.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 64..537 17..491 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:58 Download gff for BS15265.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 64..537 17..491 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:58 Download gff for BS15265.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23932858..23933019 17..178 98 <- Plus
3R 23933090..23933401 179..491 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:11 Download gff for BS15265.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19758580..19758741 17..178 98 <- Plus
arm_3R 19758812..19759123 179..491 99   Plus

BS15265.5prime Sequence

498 bp (498 high quality bases) assembled on 2006-10-24

> BS15265.5prime
GAAGTTATCAGTCGACATGCCTGGAGTCACAGTAAAGGAAATCGATCAGC
ACGTTCTGACCAAAAACATGGCTGCTTTTCTCAAAAAATCCGGAAAAATT
TTTGTGCCCGAACAGGCCGTCTATATGAAGACTGGCAAGTTCAAGGAGAC
TGCTCCTACCGACGACGACTGGTTCTACACTCGCTGCGCCTCTATTATGA
GACACCTGTACCTGCGCAGTCCCGCCGGCGTTGGGGCCTTCACCAAGGTC
TATAGCGGGCGCAAGCGCAACGGTGTTCGTCCGTCCAAGCACTGTCGCTC
ATCGGATGGCTGTATTCGCAAGGCTCTTCAAGCCTTGGAAGCTGCAAACA
TGGTGGAGAGGCACCCGGATGGTGGTCGTAAGCTGACTCCGCAAGGACAA
CGTAACTTGGATCGCATAGCCAACAAGATTGTGGCCAAGCAGCGAGAGCG
CAGTGCACCAGTTTCCATGATTATCACTACCTAAAAGCTTTCTAGACC

BS15265.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5338-PB 468 RpS19b-RB 1..468 17..484 2315 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19b-RC 659 CG5338-RC 61..530 15..484 2335 99.8 Plus
RpS19b-RB 666 CG5338-RB 68..537 15..484 2335 99.8 Plus
RpS19a-RE 678 CG4464-RE 242..520 166..444 210 73 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23933089..23933397 323..15 1545 100 Minus
3R 32079331 3R 23932858..23933021 484..321 805 99.4 Minus
X 23542271 X 16638484..16638594 166..276 195 78.4 Plus
Blast to na_te.dros performed on 2015-02-11 17:37:13 has no hits.

BS15265.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:53 Download gff for BS15265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5338-PB 1..468 17..484 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:56:54 Download gff for BS15265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5338-PB 1..468 17..484 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:54:30 Download gff for BS15265.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 64..537 10..484 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:38 Download gff for BS15265.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 64..537 10..484 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:38 Download gff for BS15265.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23932858..23933019 323..484 99 <- Minus
3R 23933090..23933401 10..322 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:54:30 Download gff for BS15265.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19758580..19758741 323..484 99 <- Minus
arm_3R 19758812..19759123 10..322 99   Minus

BS15265.complete Sequence

500 bp assembled on 2006-11-01

GenBank Submission: FJ637906

> BS15265.complete
GAAGTTATCAGTCGACATGCCTGGAGTCACAGTAAAGGAAATCGATCAGC
ACGTTCTGACCAAAAACATGGCTGCTTTTCTCAAAAAATCCGGAAAAATT
TTTGTGCCCGAACAGGCCGTCTATATGAAGACTGGCAAGTTCAAGGAGAC
TGCTCCTACCGACGACGACTGGTTCTACACTCGCTGCGCCTCTATTATGA
GACACCTGTACCTGCGCAGTCCCGCCGGCGTTGGGGCCTTCACCAAGGTC
TATAGCGGGCGCAAGCGCAACGGTGTTCGTCCGTCCAAGCACTGTCGCTC
ATCGGATGGCTGTATTCGCAAGGCTCTTCAAGCCTTGGAAGCTGCAAACA
TGGTGGAGAGGCACCCGGATGGTGGTCGTAAGCTGACTCCGCAAGGACAA
CGTAACTTGGATCGCATAGCCAACAAGATTGTGGCCAAGCAGCGAGAGCG
CAGTGCACCAGTTTCCATGATTATCACTACCTAAAAGCTTTCTAGACCAT

BS15265.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19b-RC 468 CG5338-PC 1..468 17..484 2325 99.8 Plus
RpS19b-RB 468 CG5338-PB 1..468 17..484 2325 99.8 Plus
RpS19a-RE 471 CG4464-PE 150..260 166..276 195 78.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19b-RC 659 CG5338-RC 61..530 15..484 2335 99.8 Plus
RpS19b-RB 666 CG5338-RB 68..537 15..484 2335 99.8 Plus
RpS19a-RE 678 CG4464-RE 242..352 166..276 195 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23933089..23933397 323..15 1545 100 Minus
3R 32079331 3R 23932858..23933021 484..321 805 99.4 Minus
X 23542271 X 16638484..16638594 166..276 195 78.4 Plus
Blast to na_te.dros performed on 2014-11-27 06:55:22 has no hits.

BS15265.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:15 Download gff for BS15265.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 1..468 17..484 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:55 Download gff for BS15265.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 64..537 10..484 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:02 Download gff for BS15265.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 70..535 17..482 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:16 Download gff for BS15265.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 64..537 10..484 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:06 Download gff for BS15265.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 70..535 17..482 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:06 Download gff for BS15265.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23932860..23933019 323..482 99 <- Minus
3R 23933090..23933395 17..322 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:02 Download gff for BS15265.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19758582..19758741 323..482 99 <- Minus
arm_3R 19758812..19759117 17..322 100   Minus

BS15265.pep Sequence

Translation from 16 to 483

> BS15265.pep
MPGVTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDD
DWFYTRCASIMRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCI
RKALQALEAANMVERHPDGGRKLTPQGQRNLDRIANKIVAKQRERSAPVS
MIITT*

BS15265.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19b-PC 155 CG5338-PC 1..155 1..155 807 100 Plus
RpS19b-PB 155 CG5338-PB 1..155 1..155 807 100 Plus
RpS19a-PE 156 CG4464-PE 1..153 1..153 541 66.7 Plus
RpS19a-PA 156 CG4464-PA 1..153 1..153 541 66.7 Plus
RpS19a-PC 156 CG4464-PC 1..153 1..153 541 66.7 Plus