Clone BS15269 Report

Search the DGRC for BS15269

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptArpc3B-RA
Protein status:BS15269.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15269.3prime Sequence

555 bp (555 high quality bases) assembled on 2006-10-24

> BS15269.3prime
ATGGTCTAGAAAGCTTTTACATTCCCGGTCCCGAAAGACTCTTCTCCATG
AACTTCTTCTTGGCAAAGCATATCCACCACTTGCTCGGCTTTCCATCCGG
AGTATCGAAGACCTTTTCCAGCAATCTGTTTCCGGTTTCCTGGCGCAACT
GCAGGAAGTACTGACGCATCAGCTCCGGATCCTCGGGCTTGGTGTATATT
CCGTTCAGCGGAAATCCCGCATCTCCGGGTATATCGAACCGCGAGATGGC
CAGCGTATAGAGCTCCTGCTGACCCTGCGATTTGCTTGTGCATCGGGCCA
ATCGCTTCAAACATTCCGTGATGTAGAGCGTTATGTAGATGAGCACCCTG
TCCACCTCCGACTTAACTTCGTAAGTGCGGAAGAAAATGTTCGATTTCCA
GAAGTAGAGTGACTCATCGATGATGTCGTTGGGAATATCAACAGTGGGCG
CTGGTCCTCGGACTTGGGTACGTAGTGGTAGAAGGGCCATATTCCCCACC
GAGGCTTGGAAATCCTCTATTTCCGAGTGAAATGCCGGCATGTCGACTGA
TAACT

BS15269.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8936-PA 525 Arpc3B-RA 1..525 541..17 2600 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc3B-RA 673 CG8936-RA 78..605 541..14 2625 99.8 Minus
Arpc3B-RC 693 CG8936-RC 103..625 536..14 2600 99.8 Minus
Arpc3B-RB 783 CG8936-RB 193..715 536..14 2600 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17104639..17104988 14..363 1735 99.7 Plus
X 23542271 X 17105483..17105657 362..536 875 100 Plus
3R 32079331 3R 15835384..15835544 183..23 325 80.1 Minus
Blast to na_te.dros performed on 2015-02-11 04:40:07 has no hits.

BS15269.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:58 Download gff for BS15269.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8936-PA 1..525 17..541 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:01 Download gff for BS15269.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8936-PA 1..525 17..541 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:34 Download gff for BS15269.3prime
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 70..613 7..550 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:57 Download gff for BS15269.3prime
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 70..613 7..550 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:57 Download gff for BS15269.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17104631..17104986 7..361 98 <- Plus
X 17105483..17105664 362..546 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:34 Download gff for BS15269.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16998664..16999019 7..361 98 <- Plus
arm_X 16999516..16999697 362..546 97   Plus

BS15269.5prime Sequence

555 bp (555 high quality bases) assembled on 2006-10-24

> BS15269.5prime
GAAGTTATCAGTCGACATGCCGGCATTTCACTCGGAAATAGAGGATTTCC
AAGCCTCGGTGGGGAATATGGCCCTTCTACCACTACGTACCCAAGTCCGA
GGACCAGCGCCCACTGTTGATATTCCCAACGACATCATCGATGAGTCACT
CTACTTCTGGAAATCGAACATTTTCTTCCGCACTTACGAAGTTAAGTCGG
AGGTGGACAGGGTGCTCATCTACATAACGCTCTACATCACGGAATGTTTG
AAGCGATTGGCCCGATGCACAAGCAAATCGCAGGGTCAGCAGGAGCTCTA
TACGCTGGCCATCTCGCGGTTCGATATACCCGGAGATGCGGGATTTCCGC
TGAACGGAATATACACCAAGCCCGAGGATCCGGAGCTGATGCGTCAGTAC
TTCCTGCAGTTGCGCCAGGAAACCGGAAACAGATTGCTGGAAAAGGTCTT
CGATACTCCGGATGGAAAGCCGAGCAAGTGGTGGATATGCTTTGCCAAGA
AGAAGTTCATGGAGAAGAGTCTTTCGGGACCGGGAATGTAAAAGCTTTCT
AGACC

BS15269.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8936-PA 525 Arpc3B-RA 1..525 17..541 2600 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc3B-RA 673 CG8936-RA 78..605 17..544 2625 99.8 Plus
Arpc3B-RC 693 CG8936-RC 103..625 22..544 2600 99.8 Plus
Arpc3B-RB 783 CG8936-RB 193..715 22..544 2600 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17104639..17104988 544..195 1735 99.7 Minus
X 23542271 X 17105483..17105657 196..22 875 100 Minus
3R 32079331 3R 15835384..15835544 375..535 325 80.1 Plus
Blast to na_te.dros performed on 2015-02-11 23:11:49 has no hits.

BS15269.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:59 Download gff for BS15269.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8936-PA 1..525 17..541 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:03 Download gff for BS15269.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8936-PA 1..525 17..541 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:25 Download gff for BS15269.5prime
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 70..613 8..551 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:40:27 Download gff for BS15269.5prime
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 70..613 8..551 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:40:27 Download gff for BS15269.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17104631..17104986 197..551 98 <- Minus
X 17105483..17105664 12..196 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:25 Download gff for BS15269.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16998664..16999019 197..551 98 <- Minus
arm_X 16999516..16999697 12..196 97   Minus

BS15269.complete Sequence

557 bp assembled on 2006-11-01

GenBank Submission: FJ637907

> BS15269.complete
GAAGTTATCAGTCGACATGCCGGCATTTCACTCGGAAATAGAGGATTTCC
AAGCCTCGGTGGGGAATATGGCCCTTCTACCACTACGTACCCAAGTCCGA
GGACCAGCGCCCACTGTTGATATTCCCAACGACATCATCGATGAGTCACT
CTACTTCTGGAAATCGAACATTTTCTTCCGCACTTACGAAGTTAAGTCGG
AGGTGGACAGGGTGCTCATCTACATAACGCTCTACATCACGGAATGTTTG
AAGCGATTGGCCCGATGCACAAGCAAATCGCAGGGTCAGCAGGAGCTCTA
TACGCTGGCCATCTCGCGGTTCGATATACCCGGAGATGCGGGATTTCCGC
TGAACGGAATATACACCAAGCCCGAGGATCCGGAGCTGATGCGTCAGTAC
TTCCTGCAGTTGCGCCAGGAAACCGGAAACAGATTGCTGGAAAAGGTCTT
CGATACTCCGGATGGAAAGCCGAGCAAGTGGTGGATATGCTTTGCCAAGA
AGAAGTTCATGGAGAAGAGTCTTTCGGGACCGGGAATGTAAAAGCTTTCT
AGACCAT

BS15269.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc3B-RA 525 CG8936-PA 1..525 17..541 2610 99.8 Plus
Arpc3B-RC 474 CG8936-PC 1..474 68..541 2355 99.8 Plus
Arpc3B-RB 474 CG8936-PB 1..474 68..541 2355 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc3B-RA 673 CG8936-RA 78..605 17..544 2625 99.8 Plus
Arpc3B-RC 693 CG8936-RC 103..625 22..544 2600 99.8 Plus
Arpc3B-RB 783 CG8936-RB 193..715 22..544 2600 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17104639..17104988 544..195 1735 99.7 Minus
X 23542271 X 17105483..17105657 196..22 875 100 Minus
3R 32079331 3R 15835384..15835544 375..535 325 80.1 Plus
Blast to na_te.dros performed on 2014-11-27 10:31:16 has no hits.

BS15269.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:17 Download gff for BS15269.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 1..525 17..541 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:57 Download gff for BS15269.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 70..613 8..551 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:41 Download gff for BS15269.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 78..600 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:17 Download gff for BS15269.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 70..613 8..551 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:59 Download gff for BS15269.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 78..600 17..539 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:59 Download gff for BS15269.complete
Subject Subject Range Query Range Percent Splice Strand
X 17104644..17104986 197..539 99 <- Minus
X 17105483..17105660 17..196 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:41 Download gff for BS15269.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16998677..16999019 197..539 99 <- Minus
arm_X 16999516..16999693 17..196 98   Minus

BS15269.pep Sequence

Translation from 16 to 540

> BS15269.pep
MPAFHSEIEDFQASVGNMALLPLRTQVRGPAPTVDIPNDIIDESLYFWKS
NIFFRTYEVKSEVDRVLIYITLYITECLKRLARCTSKSQGQQELYTLAIS
RFDIPGDAGFPLNGIYTKPEDPELMRQYFLQLRQETGNRLLEKVFDTPDG
KPSKWWICFAKKKFMEKSLSGPGM*

BS15269.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc3B-PA 174 CG8936-PA 1..174 1..174 922 100 Plus
Arpc3B-PC 157 CG8936-PC 1..157 18..174 833 100 Plus
Arpc3B-PB 157 CG8936-PB 1..157 18..174 833 100 Plus
Arpc3A-PE 177 CG4560-PE 1..176 1..173 721 73.9 Plus
Arpc3A-PC 177 CG4560-PC 1..176 1..173 721 73.9 Plus