Clone Sequence Records
BS15269.3prime Sequence
555 bp (555 high quality bases) assembled on 2006-10-24
> BS15269.3prime
ATGGTCTAGAAAGCTTTTACATTCCCGGTCCCGAAAGACTCTTCTCCATG
AACTTCTTCTTGGCAAAGCATATCCACCACTTGCTCGGCTTTCCATCCGG
AGTATCGAAGACCTTTTCCAGCAATCTGTTTCCGGTTTCCTGGCGCAACT
GCAGGAAGTACTGACGCATCAGCTCCGGATCCTCGGGCTTGGTGTATATT
CCGTTCAGCGGAAATCCCGCATCTCCGGGTATATCGAACCGCGAGATGGC
CAGCGTATAGAGCTCCTGCTGACCCTGCGATTTGCTTGTGCATCGGGCCA
ATCGCTTCAAACATTCCGTGATGTAGAGCGTTATGTAGATGAGCACCCTG
TCCACCTCCGACTTAACTTCGTAAGTGCGGAAGAAAATGTTCGATTTCCA
GAAGTAGAGTGACTCATCGATGATGTCGTTGGGAATATCAACAGTGGGCG
CTGGTCCTCGGACTTGGGTACGTAGTGGTAGAAGGGCCATATTCCCCACC
GAGGCTTGGAAATCCTCTATTTCCGAGTGAAATGCCGGCATGTCGACTGA
TAACT
BS15269.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8936-PA | 525 | Arpc3B-RA | 1..525 | 541..17 | 2600 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc3B-RA | 673 | CG8936-RA | 78..605 | 541..14 | 2625 | 99.8 | Minus |
Arpc3B-RC | 693 | CG8936-RC | 103..625 | 536..14 | 2600 | 99.8 | Minus |
Arpc3B-RB | 783 | CG8936-RB | 193..715 | 536..14 | 2600 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17104639..17104988 | 14..363 | 1735 | 99.7 | Plus |
X | 23542271 | X | 17105483..17105657 | 362..536 | 875 | 100 | Plus |
3R | 32079331 | 3R | 15835384..15835544 | 183..23 | 325 | 80.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:40:07 has no hits.
BS15269.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:58 Download gff for
BS15269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8936-PA | 1..525 | 17..541 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:01 Download gff for
BS15269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8936-PA | 1..525 | 17..541 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:34 Download gff for
BS15269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 70..613 | 7..550 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:57 Download gff for
BS15269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 70..613 | 7..550 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:57 Download gff for
BS15269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17104631..17104986 | 7..361 | 98 | <- | Plus |
X | 17105483..17105664 | 362..546 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:34 Download gff for
BS15269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16998664..16999019 | 7..361 | 98 | <- | Plus |
arm_X | 16999516..16999697 | 362..546 | 97 | | Plus |
BS15269.5prime Sequence
555 bp (555 high quality bases) assembled on 2006-10-24
> BS15269.5prime
GAAGTTATCAGTCGACATGCCGGCATTTCACTCGGAAATAGAGGATTTCC
AAGCCTCGGTGGGGAATATGGCCCTTCTACCACTACGTACCCAAGTCCGA
GGACCAGCGCCCACTGTTGATATTCCCAACGACATCATCGATGAGTCACT
CTACTTCTGGAAATCGAACATTTTCTTCCGCACTTACGAAGTTAAGTCGG
AGGTGGACAGGGTGCTCATCTACATAACGCTCTACATCACGGAATGTTTG
AAGCGATTGGCCCGATGCACAAGCAAATCGCAGGGTCAGCAGGAGCTCTA
TACGCTGGCCATCTCGCGGTTCGATATACCCGGAGATGCGGGATTTCCGC
TGAACGGAATATACACCAAGCCCGAGGATCCGGAGCTGATGCGTCAGTAC
TTCCTGCAGTTGCGCCAGGAAACCGGAAACAGATTGCTGGAAAAGGTCTT
CGATACTCCGGATGGAAAGCCGAGCAAGTGGTGGATATGCTTTGCCAAGA
AGAAGTTCATGGAGAAGAGTCTTTCGGGACCGGGAATGTAAAAGCTTTCT
AGACC
BS15269.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8936-PA | 525 | Arpc3B-RA | 1..525 | 17..541 | 2600 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc3B-RA | 673 | CG8936-RA | 78..605 | 17..544 | 2625 | 99.8 | Plus |
Arpc3B-RC | 693 | CG8936-RC | 103..625 | 22..544 | 2600 | 99.8 | Plus |
Arpc3B-RB | 783 | CG8936-RB | 193..715 | 22..544 | 2600 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17104639..17104988 | 544..195 | 1735 | 99.7 | Minus |
X | 23542271 | X | 17105483..17105657 | 196..22 | 875 | 100 | Minus |
3R | 32079331 | 3R | 15835384..15835544 | 375..535 | 325 | 80.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:11:49 has no hits.
BS15269.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:21:59 Download gff for
BS15269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8936-PA | 1..525 | 17..541 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:03 Download gff for
BS15269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8936-PA | 1..525 | 17..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:25 Download gff for
BS15269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 70..613 | 8..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:40:27 Download gff for
BS15269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 70..613 | 8..551 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:40:27 Download gff for
BS15269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17104631..17104986 | 197..551 | 98 | <- | Minus |
X | 17105483..17105664 | 12..196 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:25 Download gff for
BS15269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16998664..16999019 | 197..551 | 98 | <- | Minus |
arm_X | 16999516..16999697 | 12..196 | 97 | | Minus |
BS15269.complete Sequence
557 bp assembled on 2006-11-01
GenBank Submission: FJ637907
> BS15269.complete
GAAGTTATCAGTCGACATGCCGGCATTTCACTCGGAAATAGAGGATTTCC
AAGCCTCGGTGGGGAATATGGCCCTTCTACCACTACGTACCCAAGTCCGA
GGACCAGCGCCCACTGTTGATATTCCCAACGACATCATCGATGAGTCACT
CTACTTCTGGAAATCGAACATTTTCTTCCGCACTTACGAAGTTAAGTCGG
AGGTGGACAGGGTGCTCATCTACATAACGCTCTACATCACGGAATGTTTG
AAGCGATTGGCCCGATGCACAAGCAAATCGCAGGGTCAGCAGGAGCTCTA
TACGCTGGCCATCTCGCGGTTCGATATACCCGGAGATGCGGGATTTCCGC
TGAACGGAATATACACCAAGCCCGAGGATCCGGAGCTGATGCGTCAGTAC
TTCCTGCAGTTGCGCCAGGAAACCGGAAACAGATTGCTGGAAAAGGTCTT
CGATACTCCGGATGGAAAGCCGAGCAAGTGGTGGATATGCTTTGCCAAGA
AGAAGTTCATGGAGAAGAGTCTTTCGGGACCGGGAATGTAAAAGCTTTCT
AGACCAT
BS15269.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc3B-RA | 525 | CG8936-PA | 1..525 | 17..541 | 2610 | 99.8 | Plus |
Arpc3B-RC | 474 | CG8936-PC | 1..474 | 68..541 | 2355 | 99.8 | Plus |
Arpc3B-RB | 474 | CG8936-PB | 1..474 | 68..541 | 2355 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc3B-RA | 673 | CG8936-RA | 78..605 | 17..544 | 2625 | 99.8 | Plus |
Arpc3B-RC | 693 | CG8936-RC | 103..625 | 22..544 | 2600 | 99.8 | Plus |
Arpc3B-RB | 783 | CG8936-RB | 193..715 | 22..544 | 2600 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:31:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17104639..17104988 | 544..195 | 1735 | 99.7 | Minus |
X | 23542271 | X | 17105483..17105657 | 196..22 | 875 | 100 | Minus |
3R | 32079331 | 3R | 15835384..15835544 | 375..535 | 325 | 80.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:31:16 has no hits.
BS15269.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:17 Download gff for
BS15269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 1..525 | 17..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:57 Download gff for
BS15269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 70..613 | 8..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:41 Download gff for
BS15269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 78..600 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:17 Download gff for
BS15269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 70..613 | 8..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:59 Download gff for
BS15269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 78..600 | 17..539 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:59 Download gff for
BS15269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17104644..17104986 | 197..539 | 99 | <- | Minus |
X | 17105483..17105660 | 17..196 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:41 Download gff for
BS15269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16998677..16999019 | 197..539 | 99 | <- | Minus |
arm_X | 16999516..16999693 | 17..196 | 98 | | Minus |
BS15269.pep Sequence
Translation from 16 to 540
> BS15269.pep
MPAFHSEIEDFQASVGNMALLPLRTQVRGPAPTVDIPNDIIDESLYFWKS
NIFFRTYEVKSEVDRVLIYITLYITECLKRLARCTSKSQGQQELYTLAIS
RFDIPGDAGFPLNGIYTKPEDPELMRQYFLQLRQETGNRLLEKVFDTPDG
KPSKWWICFAKKKFMEKSLSGPGM*
BS15269.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc3B-PA | 174 | CG8936-PA | 1..174 | 1..174 | 922 | 100 | Plus |
Arpc3B-PC | 157 | CG8936-PC | 1..157 | 18..174 | 833 | 100 | Plus |
Arpc3B-PB | 157 | CG8936-PB | 1..157 | 18..174 | 833 | 100 | Plus |
Arpc3A-PE | 177 | CG4560-PE | 1..176 | 1..173 | 721 | 73.9 | Plus |
Arpc3A-PC | 177 | CG4560-PC | 1..176 | 1..173 | 721 | 73.9 | Plus |