Clone BS15272 Report

Search the DGRC for BS15272

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:152
Well:72
Vector:pDNR-Dual
Associated Gene/Transcriptdgt4-RA
Protein status:BS15272.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15272.3prime Sequence

597 bp (597 high quality bases) assembled on 2006-10-24

> BS15272.3prime
ATGGTCTAGAAAGCTTCTACTTGTTGGTTTCCCGCGGTGGGAGAAGATCC
TCCACAAGGCGGTCCATTGCCTGTATCATGCCCATCTCCATACCATTCTC
CAATCCATCGACGGCGGTACGCAAACTTCTTAGAGCTTCTTGGTTCTGGG
CGAACTCCCGTTGTTGCCGGCATAGATTTAGGCGCGGTTTGTGGGTGGTG
TTCAGATGTTCCAGGCACTGCTTCACATCGTTGGAGTCCAGAATGGCGGG
ACGCAGATCACTGCCCAGTTTGGATCGCAAACTAGCGATATCCTTGGCCG
CCTGGTCGACTTGATTCACATCAGATACACGATGGGCATCCACGGCCGCC
TGCAGGGCTCCGCACTTCAGGAGCCTCGCCAGCCGCCCAAAGTCCCGCTG
ATACTCACACTTGGCGTCCAGCCAAATGCGTACTTGCTCCTCCACCTGGC
GCTTTACATTGCGGCTGTCTTCCTGAAAACGGCGCATCGCCTCCAGGTGC
AGCAGGTATTGGATGTCGTCCATGGTGCCCTCAGTTGTCAATGATGGCGG
TGTGGTCGTGGTGGGAGTGGGTGGAGTTTCCATGTCGACTGATAACT

BS15272.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4865-PA 567 CG4865-RA 1..563 583..21 2790 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
dgt4-RC 986 CG4865-RC 344..910 583..17 2805 99.6 Minus
dgt4-RB 1101 CG4865-RB 400..966 583..17 2805 99.6 Minus
dgt4-RA 729 CG4865-RA 87..653 583..17 2805 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4114228..4114794 583..17 2805 99.6 Minus
Blast to na_te.dros performed on 2015-02-11 04:40:37 has no hits.

BS15272.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:03 Download gff for BS15272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4865-PA 1..567 17..583 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:07 Download gff for BS15272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4865-PA 1..567 17..583 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:46 Download gff for BS15272.3prime
Subject Subject Range Query Range Percent Splice Strand
dgt4-RA 75..653 17..595 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:52 Download gff for BS15272.3prime
Subject Subject Range Query Range Percent Splice Strand
dgt4-RA 75..653 17..595 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:52 Download gff for BS15272.3prime
Subject Subject Range Query Range Percent Splice Strand
X 4114216..4114794 17..595 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:46 Download gff for BS15272.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4008249..4008827 17..595 98   Minus

BS15272.5prime Sequence

597 bp (597 high quality bases) assembled on 2006-10-24

> BS15272.5prime
GAAGTTATCAGTCGACATGGAAACTCCACCCACTCCCACCACGACCACAC
CGCCATCATTGACAACTGAGGGCACCATGGACGACATCCAATACCTGCTG
CACCTGGAGGCGATGCGCCGTTTTCAGGAAGACAGCCGCAATGTAAAGCG
CCAGGTGGAGGAGCAAGTACGCATTTGGCTGGACGCCAAGTGTGAGTATC
AGCGGGACTTTGGGCGGCTGGCGAGGCTCCTGAAGTGCGGAGCCCTGCAG
GCGGCCGTGGATGCCCATCGTGTATCTGATGTGAATCAAGTCGACCAGGC
GGCCAAGGATATCGCTAGTTTGCGATCCAAACTGGGCAGTGATCTGCGTC
CCGCCATTCTGGACTCCAACGATGTGAAGCAGTGCCTGGAACATCTGAAC
ACCACCCACAAACCGCGCCTAAATCTATGCCGGCAACAACGGGAGTTCGC
CCAGAACCAAGAAGCTCTAAGAAGTTTGCGTACCGCCGTCGATGGATTGG
AGAATGGTATGGAGATGGGCATGATACAGGCAATGGACCGCCTTGTGGAG
GATCTTCTCCCACCGCGGGAAACAAACAACTAGAAGCTTTCTAGACC

BS15272.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4865-PA 567 CG4865-RA 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
dgt4-RC 986 CG4865-RC 344..910 17..583 2835 100 Plus
dgt4-RB 1101 CG4865-RB 400..966 17..583 2835 100 Plus
dgt4-RA 729 CG4865-RA 87..653 17..583 2835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4114228..4114794 17..583 2835 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:40:10 has no hits.

BS15272.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:04 Download gff for BS15272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4865-PA 1..567 17..583 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:09 Download gff for BS15272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4865-PA 1..567 17..583 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:23:54 Download gff for BS15272.5prime
Subject Subject Range Query Range Percent Splice Strand
dgt4-RA 75..653 5..583 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:16 Download gff for BS15272.5prime
Subject Subject Range Query Range Percent Splice Strand
dgt4-RA 75..653 5..583 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:16 Download gff for BS15272.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4114223..4114794 11..583 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:23:54 Download gff for BS15272.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4008256..4008827 11..583 99   Plus

BS15272.complete Sequence

599 bp assembled on 2006-11-01

GenBank Submission: FJ637908

> BS15272.complete
GAAGTTATCAGTCGACATGGAAACTCCACCCACTCCCACCACGACCACAC
CGCCATCATTGACAACTGAGGGCACCATGGACGACATCCAATACCTGCTG
CACCTGGAGGCGATGCGCCGTTTTCAGGAAGACAGCCGCAATGTAAAGCG
CCAGGTGGAGGAGCAAGTACGCATTTGGCTGGACGCCAAGTGTGAGTATC
AGCGGGACTTTGGGCGGCTGGCGAGGCTCCTGAAGTGCGGAGCCCTGCAG
GCGGCCGTGGATGCCCATCGTGTATCTGATGTGAATCAAGTCGACCAGGC
GGCCAAGGATATCGCTAGTTTGCGATCCAAACTGGGCAGTGATCTGCGTC
CCGCCATTCTGGACTCCAACGATGTGAAGCAGTGCCTGGAACATCTGAAC
ACCACCCACAAACCGCGCCTAAATCTATGCCGGCAACAACGGGAGTTCGC
CCAGAACCAAGAAGCTCTAAGAAGTTTGCGTACCGCCGTCGATGGATTGG
AGAATGGTATGGAGATGGGCATGATACAGGCAATGGACCGCCTTGTGGAG
GATCTTCTCCCACCGCGGGAAACAAACAACTAGAAGCTTTCTAGACCAT

BS15272.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
dgt4-RC 567 CG4865-PC 1..567 17..583 2835 100 Plus
dgt4-RB 567 CG4865-PB 1..567 17..583 2835 100 Plus
dgt4-RA 567 CG4865-PA 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
dgt4-RC 986 CG4865-RC 344..910 17..583 2835 100 Plus
dgt4-RB 1101 CG4865-RB 400..966 17..583 2835 100 Plus
dgt4-RA 729 CG4865-RA 87..653 17..583 2835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4114228..4114794 17..583 2835 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:57:40 has no hits.

BS15272.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:09 Download gff for BS15272.complete
Subject Subject Range Query Range Percent Splice Strand
dgt4-RA 1..567 17..583 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:58 Download gff for BS15272.complete
Subject Subject Range Query Range Percent Splice Strand
dgt4-RA 58..636 5..583 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:15 Download gff for BS15272.complete
Subject Subject Range Query Range Percent Splice Strand
dgt4-RA 87..639 17..569 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:10 Download gff for BS15272.complete
Subject Subject Range Query Range Percent Splice Strand
dgt4-RA 58..636 5..583 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:07 Download gff for BS15272.complete
Subject Subject Range Query Range Percent Splice Strand
dgt4-RA 87..639 17..569 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:07 Download gff for BS15272.complete
Subject Subject Range Query Range Percent Splice Strand
X 4114228..4114780 17..569 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:15 Download gff for BS15272.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4008261..4008813 17..569 100   Plus

BS15272.pep Sequence

Translation from 16 to 582

> BS15272.pep
METPPTPTTTTPPSLTTEGTMDDIQYLLHLEAMRRFQEDSRNVKRQVEEQ
VRIWLDAKCEYQRDFGRLARLLKCGALQAAVDAHRVSDVNQVDQAAKDIA
SLRSKLGSDLRPAILDSNDVKQCLEHLNTTHKPRLNLCRQQREFAQNQEA
LRSLRTAVDGLENGMEMGMIQAMDRLVEDLLPPRETNN*

BS15272.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
dgt4-PC 188 CG4865-PC 1..188 1..188 969 100 Plus
dgt4-PB 188 CG4865-PB 1..188 1..188 969 100 Plus
dgt4-PA 188 CG4865-PA 1..188 1..188 969 100 Plus