Clone Sequence Records
BS15272.3prime Sequence
597 bp (597 high quality bases) assembled on 2006-10-24
> BS15272.3prime
ATGGTCTAGAAAGCTTCTACTTGTTGGTTTCCCGCGGTGGGAGAAGATCC
TCCACAAGGCGGTCCATTGCCTGTATCATGCCCATCTCCATACCATTCTC
CAATCCATCGACGGCGGTACGCAAACTTCTTAGAGCTTCTTGGTTCTGGG
CGAACTCCCGTTGTTGCCGGCATAGATTTAGGCGCGGTTTGTGGGTGGTG
TTCAGATGTTCCAGGCACTGCTTCACATCGTTGGAGTCCAGAATGGCGGG
ACGCAGATCACTGCCCAGTTTGGATCGCAAACTAGCGATATCCTTGGCCG
CCTGGTCGACTTGATTCACATCAGATACACGATGGGCATCCACGGCCGCC
TGCAGGGCTCCGCACTTCAGGAGCCTCGCCAGCCGCCCAAAGTCCCGCTG
ATACTCACACTTGGCGTCCAGCCAAATGCGTACTTGCTCCTCCACCTGGC
GCTTTACATTGCGGCTGTCTTCCTGAAAACGGCGCATCGCCTCCAGGTGC
AGCAGGTATTGGATGTCGTCCATGGTGCCCTCAGTTGTCAATGATGGCGG
TGTGGTCGTGGTGGGAGTGGGTGGAGTTTCCATGTCGACTGATAACT
BS15272.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4865-PA | 567 | CG4865-RA | 1..563 | 583..21 | 2790 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgt4-RC | 986 | CG4865-RC | 344..910 | 583..17 | 2805 | 99.6 | Minus |
dgt4-RB | 1101 | CG4865-RB | 400..966 | 583..17 | 2805 | 99.6 | Minus |
dgt4-RA | 729 | CG4865-RA | 87..653 | 583..17 | 2805 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4114228..4114794 | 583..17 | 2805 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:40:37 has no hits.
BS15272.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:03 Download gff for
BS15272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4865-PA | 1..567 | 17..583 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:07 Download gff for
BS15272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4865-PA | 1..567 | 17..583 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:38:46 Download gff for
BS15272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt4-RA | 75..653 | 17..595 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:52 Download gff for
BS15272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt4-RA | 75..653 | 17..595 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:52 Download gff for
BS15272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4114216..4114794 | 17..595 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:38:46 Download gff for
BS15272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4008249..4008827 | 17..595 | 98 | | Minus |
BS15272.5prime Sequence
597 bp (597 high quality bases) assembled on 2006-10-24
> BS15272.5prime
GAAGTTATCAGTCGACATGGAAACTCCACCCACTCCCACCACGACCACAC
CGCCATCATTGACAACTGAGGGCACCATGGACGACATCCAATACCTGCTG
CACCTGGAGGCGATGCGCCGTTTTCAGGAAGACAGCCGCAATGTAAAGCG
CCAGGTGGAGGAGCAAGTACGCATTTGGCTGGACGCCAAGTGTGAGTATC
AGCGGGACTTTGGGCGGCTGGCGAGGCTCCTGAAGTGCGGAGCCCTGCAG
GCGGCCGTGGATGCCCATCGTGTATCTGATGTGAATCAAGTCGACCAGGC
GGCCAAGGATATCGCTAGTTTGCGATCCAAACTGGGCAGTGATCTGCGTC
CCGCCATTCTGGACTCCAACGATGTGAAGCAGTGCCTGGAACATCTGAAC
ACCACCCACAAACCGCGCCTAAATCTATGCCGGCAACAACGGGAGTTCGC
CCAGAACCAAGAAGCTCTAAGAAGTTTGCGTACCGCCGTCGATGGATTGG
AGAATGGTATGGAGATGGGCATGATACAGGCAATGGACCGCCTTGTGGAG
GATCTTCTCCCACCGCGGGAAACAAACAACTAGAAGCTTTCTAGACC
BS15272.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:17:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4865-PA | 567 | CG4865-RA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgt4-RC | 986 | CG4865-RC | 344..910 | 17..583 | 2835 | 100 | Plus |
dgt4-RB | 1101 | CG4865-RB | 400..966 | 17..583 | 2835 | 100 | Plus |
dgt4-RA | 729 | CG4865-RA | 87..653 | 17..583 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4114228..4114794 | 17..583 | 2835 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:40:10 has no hits.
BS15272.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:22:04 Download gff for
BS15272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4865-PA | 1..567 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:57:09 Download gff for
BS15272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4865-PA | 1..567 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:23:54 Download gff for
BS15272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt4-RA | 75..653 | 5..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:16 Download gff for
BS15272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt4-RA | 75..653 | 5..583 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:16 Download gff for
BS15272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4114223..4114794 | 11..583 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:23:54 Download gff for
BS15272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4008256..4008827 | 11..583 | 99 | | Plus |
BS15272.complete Sequence
599 bp assembled on 2006-11-01
GenBank Submission: FJ637908
> BS15272.complete
GAAGTTATCAGTCGACATGGAAACTCCACCCACTCCCACCACGACCACAC
CGCCATCATTGACAACTGAGGGCACCATGGACGACATCCAATACCTGCTG
CACCTGGAGGCGATGCGCCGTTTTCAGGAAGACAGCCGCAATGTAAAGCG
CCAGGTGGAGGAGCAAGTACGCATTTGGCTGGACGCCAAGTGTGAGTATC
AGCGGGACTTTGGGCGGCTGGCGAGGCTCCTGAAGTGCGGAGCCCTGCAG
GCGGCCGTGGATGCCCATCGTGTATCTGATGTGAATCAAGTCGACCAGGC
GGCCAAGGATATCGCTAGTTTGCGATCCAAACTGGGCAGTGATCTGCGTC
CCGCCATTCTGGACTCCAACGATGTGAAGCAGTGCCTGGAACATCTGAAC
ACCACCCACAAACCGCGCCTAAATCTATGCCGGCAACAACGGGAGTTCGC
CCAGAACCAAGAAGCTCTAAGAAGTTTGCGTACCGCCGTCGATGGATTGG
AGAATGGTATGGAGATGGGCATGATACAGGCAATGGACCGCCTTGTGGAG
GATCTTCTCCCACCGCGGGAAACAAACAACTAGAAGCTTTCTAGACCAT
BS15272.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgt4-RC | 567 | CG4865-PC | 1..567 | 17..583 | 2835 | 100 | Plus |
dgt4-RB | 567 | CG4865-PB | 1..567 | 17..583 | 2835 | 100 | Plus |
dgt4-RA | 567 | CG4865-PA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgt4-RC | 986 | CG4865-RC | 344..910 | 17..583 | 2835 | 100 | Plus |
dgt4-RB | 1101 | CG4865-RB | 400..966 | 17..583 | 2835 | 100 | Plus |
dgt4-RA | 729 | CG4865-RA | 87..653 | 17..583 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4114228..4114794 | 17..583 | 2835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:57:40 has no hits.
BS15272.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:09 Download gff for
BS15272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt4-RA | 1..567 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:58 Download gff for
BS15272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt4-RA | 58..636 | 5..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:15 Download gff for
BS15272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt4-RA | 87..639 | 17..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:10 Download gff for
BS15272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt4-RA | 58..636 | 5..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:07 Download gff for
BS15272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgt4-RA | 87..639 | 17..569 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:07 Download gff for
BS15272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4114228..4114780 | 17..569 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:15 Download gff for
BS15272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4008261..4008813 | 17..569 | 100 | | Plus |
BS15272.pep Sequence
Translation from 16 to 582
> BS15272.pep
METPPTPTTTTPPSLTTEGTMDDIQYLLHLEAMRRFQEDSRNVKRQVEEQ
VRIWLDAKCEYQRDFGRLARLLKCGALQAAVDAHRVSDVNQVDQAAKDIA
SLRSKLGSDLRPAILDSNDVKQCLEHLNTTHKPRLNLCRQQREFAQNQEA
LRSLRTAVDGLENGMEMGMIQAMDRLVEDLLPPRETNN*
BS15272.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgt4-PC | 188 | CG4865-PC | 1..188 | 1..188 | 969 | 100 | Plus |
dgt4-PB | 188 | CG4865-PB | 1..188 | 1..188 | 969 | 100 | Plus |
dgt4-PA | 188 | CG4865-PA | 1..188 | 1..188 | 969 | 100 | Plus |